Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
BcaC04g19512 Brassica carinata HOM05D007388 ORTHO05D009421 9.1e-119 430.3 218 100.0
C09p54850 Brassica napus HOM05D007388 ORTHO05D009421 9.1e-119 430.3 218 100.0
BolC9t58346H Brassica oleracea HOM05D007388 ORTHO05D009421 9.1e-119 430.3 218 100.0
A10p18840 Brassica napus HOM05D007388 ORTHO05D009421 2.5e-116 422.2 218 98.2
BraA10t43964Z Brassica rapa HOM05D007388 ORTHO05D009421 1.2e-115 419.9 218 97.7
BcaB08g36472 Brassica carinata HOM05D007388 ORTHO05D009421 3.3e-108 395.2 219 91.8
Sp6g23310 Schrenkiella parvula HOM05D007388 ORTHO05D009421 5.7e-105 384.4 218 88.1
Thhalv10014636m.g Eutrema salsugineum HOM05D007388 ORTHO05D009421 1.3e-104 383.3 218 88.1
AL6G32850 Arabidopsis lyrata HOM05D007388 ORTHO05D009421 4.9e-104 381.3 219 88.6
AT5G21430 Arabidopsis thaliana HOM05D007388 ORTHO05D009421 2.0e-102 375.9 219 86.8
Carub.0006s1952 Capsella rubella HOM05D007388 ORTHO05D009421 5.8e-97 357.8 221 83.3
CARHR191660 Cardamine hirsuta HOM05D007388 ORTHO05D009421 1.4e-95 353.2 221 81.9
Aa31LG1G13520 Aethionema arabicum HOM05D007388 ORTHO05D009421 1.6e-83 313.2 233 70.8
THA.LOC104799581 Tarenaya hassleriana HOM05D007388 ORTHO05D009421 1.6e-67 260.0 219 61.2
Gohir.A05G039100 Gossypium hirsutum HOM05D007388 ORTHO05D009421 4.0e-58 228.8 215 56.3
Gohir.D05G040600 Gossypium hirsutum HOM05D007388 ORTHO05D009421 3.4e-57 225.7 215 55.8
Duzib168G1804 Durio zibethinus HOM05D007388 ORTHO05D009421 5.8e-57 224.9 174 64.4
COL.COLO4_21128 Corchorus olitorius HOM05D007388 ORTHO05D009421 6.4e-56 221.5 173 63.6
Eucgr.C03150 Eucalyptus grandis HOM05D007388 ORTHO05D009421 4.2e-55 218.8 221 54.3
PGR044G0912 Punica granatum HOM05D007388 ORTHO05D009421 4.2e-55 218.8 174 63.8
Nn8g38703 Nelumbo nucifera HOM05D007388 ORTHO05D009421 5.5e-55 218.4 188 61.2
Atru.chr7.1857 Acer truncatum HOM05D007388 ORTHO05D009421 1.6e-54 216.9 180 60.6
CiPaw.16G070200 Carya illinoinensis HOM05D007388 ORTHO05D009421 2.7e-54 216.1 170 65.9
TAR383G1008 Trochodendron aralioides HOM05D007388 ORTHO05D009421 3.5e-54 215.7 173 62.4
TPR.G3529 Trifolium pratense HOM05D007388 ORTHO05D009421 1.0e-53 214.2 190 55.3
QL02p016663 Quercus lobata HOM05D007388 ORTHO05D009421 1.3e-53 213.8 172 61.0
Psat5g102720 Pisum sativum HOM05D007388 ORTHO05D009421 2.3e-53 213.0 190 56.8
Cfa018015 Carpinus fangiana HOM05D007388 ORTHO05D009421 6.7e-53 211.5 176 63.6
Lalb_Chr11g0063321 Lupinus albus HOM05D007388 ORTHO05D009421 8.7e-53 211.1 218 52.3
Manes.16G084900 Manihot esculenta HOM05D007388 ORTHO05D009421 1.5e-52 210.3 213 53.5
Sabra06G0171500 Salix brachista HOM05D007388 ORTHO05D009421 2.5e-52 209.5 174 61.5
Medtr3g104980 Medicago truncatula HOM05D007388 ORTHO05D009421 3.3e-52 209.1 195 54.9
GSVIVG01035454001 Vitis vinifera HOM05D007388 ORTHO05D009421 4.3e-52 208.8 173 61.8
CsaV3_4G036020 Cucumis sativus L. HOM05D007388 ORTHO05D009421 9.6e-52 207.6 179 59.8
MD15G1051600 Malus domestica HOM05D007388 ORTHO05D009421 9.6e-52 207.6 193 57.0
MELO3C016910.2 Cucumis melo HOM05D007388 ORTHO05D009421 1.3e-51 207.2 179 59.8
Potri.006G221900 Populus trichocarpa HOM05D007388 ORTHO05D009421 1.6e-51 206.8 174 62.1
Ciclev10009451m.g Citrus clementina HOM05D007388 ORTHO05D009421 2.8e-51 206.1 173 57.8
Migut.A00083 Erythranthe guttata HOM05D007388 ORTHO05D009421 2.8e-51 206.1 197 53.8
TWI63G1062 Tripterygium wilfordii HOM05D007388 ORTHO05D009421 3.7e-51 205.7 173 59.5
CSS0004113 Camellia sinensis var. sinensis HOM05D007388 ORTHO05D009421 3.1e-50 202.6 187 53.5
Glyma.06G055600 Glycine max HOM05D007388 ORTHO05D009421 3.1e-50 202.6 209 52.6
Dinv41838 Davidia involucrata HOM05D007388 ORTHO05D009421 4.0e-50 202.2 216 49.1
Glyma.04G055400 Glycine max HOM05D007388 ORTHO05D009421 1.5e-49 200.3 209 51.7
Sed0027665 Sechium edule HOM05D007388 ORTHO05D009421 1.5e-49 200.3 199 56.3
ECA240G1505 Erigeron canadensis HOM05D007388 ORTHO05D009421 2.0e-49 199.9 178 58.4
MSTRG.25983 Avicennia marina HOM05D007388 ORTHO05D009421 4.5e-49 198.7 187 56.1
AUR62020582 Chenopodium quinoa HOM05D007388 ORTHO05D009421 4.5e-49 198.7 194 54.6
AUR62009088 Chenopodium quinoa HOM05D007388 ORTHO05D009421 5.8e-49 198.4 227 48.9
Lj1g0010451 Lotus japonicus HOM05D007388 ORTHO05D009421 5.8e-49 198.4 186 55.9
FvH4_2g31130 Fragaria vesca HOM05D007388 ORTHO05D009421 7.6e-49 198.0 172 57.0
Phvul.009G081500 Phaseolus vulgaris HOM05D007388 ORTHO05D009421 7.6e-49 198.0 203 53.7
FAN20G0472 Fragaria x ananassa HOM05D007388 ORTHO05D009421 2.2e-48 196.4 172 57.0
CANSAT25G2576 Cannabis sativa HOM05D007388 ORTHO05D009421 3.8e-48 195.7 152 60.5
FAN24G3326 Fragaria x ananassa HOM05D007388 ORTHO05D009421 4.9e-48 195.3 172 56.4
ClCG05G015710 Citrullus lanatus HOM05D007388 ORTHO05D009421 6.5e-48 194.9 230 50.0
Thecc.09G062100 Theobroma cacao HOM05D007388 ORTHO05D009421 8.4e-48 194.5 173 58.4
Actinidia25694 Actinidia chinensis HOM05D007388 ORTHO05D009421 1.9e-47 193.4 181 54.7
RcHm_v2.0_Chr6g0311651 Rosa chinensis HOM05D007388 ORTHO05D009421 3.2e-47 192.6 217 49.3
HanXRQChr04g0097861 Helianthus annuus HOM05D007388 ORTHO05D009421 5.5e-47 191.8 198 52.0
Nitab4.5_0001705g0020 Nicotiana tabacum HOM05D007388 ORTHO05D009421 5.5e-47 191.8 200 51.0
PSO421G0687 Papaver somniferum HOM05D007388 ORTHO05D009421 1.2e-46 190.7 182 56.0
ATR0598G070 Amborella trichopoda HOM05D007388 ORTHO05D009421 1.6e-46 190.3 196 49.5
FAN27G0155 Fragaria x ananassa HOM05D007388 ORTHO05D009421 1.6e-46 190.3 191 51.8
Atru.BG.20.p Acer truncatum HOM05D007388 ORTHO05D009421 7.9e-46 188.0 127 67.7
Gorai.009G041100 Gossypium raimondii HOM05D007388 ORTHO05D009421 7.9e-46 188.0 185 55.1
Peaxi162Scf00596g00105 Petunia axillaris HOM05D007388 ORTHO05D009421 1.0e-45 187.6 206 49.5
MBI19_g11844_MAGBIO Magnolia biondii HOM05D007388 ORTHO05D009421 1.8e-45 186.8 195 52.8
PGSC0003DMG400027673 Solanum tuberosum HOM05D007388 ORTHO05D009421 1.1e-44 184.1 162 57.4
VMungo1309G3057 Vigna mungo HOM05D007388 ORTHO05D009421 5.7e-44 181.8 207 50.7
CAN.G246.5 Capsicum annuum HOM05D007388 ORTHO05D009421 9.6e-44 181.0 198 48.0
Sopen06g034360 Solanum pennellii HOM05D007388 ORTHO05D009421 9.6e-44 181.0 170 54.7
DCAR_003716 Daucus carota HOM05D007388 ORTHO05D009421 4.8e-43 178.7 162 53.1
Oeu000765.1 Olea europaea HOM05D007388 ORTHO05D009421 4.8e-43 178.7 275 40.4
CDE06G1148 Ceratophyllum demersum HOM05D007388 ORTHO05D009421 6.3e-43 178.3 180 50.0
Solyc06g082970.3 Solanum lycopersicum HOM05D007388 ORTHO05D009421 6.3e-43 178.3 170 53.5
Os12g0498500 Oryza sativa ssp. japonica HOM05D007388 ORTHO05D009421 1.8e-42 176.8 169 53.8
Rhsim10G0152000 Rhododendron simsii HOM05D007388 ORTHO05D009421 4.1e-42 175.6 143 56.6
Zm00001eb409580 Zea mays HOM05D007388 ORTHO05D009421 1.5e-41 173.7 174 52.9
arahy.Tifrunner.gnm1.ann1.P6UV73 Arachis hypogaea HOM05D007388 ORTHO05D009421 2.6e-41 172.9 169 52.7
CDE07G0202 Ceratophyllum demersum HOM05D007388 ORTHO05D001048 7.6e-41 171.4 160 53.1
Cc08_g01260 Coffea canephora HOM05D007388 ORTHO05D009421 2.2e-40 169.9 163 53.4
Ca_15836_v3 Cicer arietinum L. HOM05D007388 ORTHO05D009421 6.5e-40 168.3 155 56.1
Prupe.1G405600 Prunus persica HOM05D007388 ORTHO05D009421 5.5e-39 165.2 140 59.3
arahy.Tifrunner.gnm1.ann1.044LWD Arachis hypogaea HOM05D000560 ORTHO05D000417 4.6e-38 162.2 169 50.9
EL10Ac2g03792 Beta vulgaris HOM05D007388 ORTHO05D009421 4.6e-38 162.2 127 62.2
Lsat_1_v5_gn_7_58400 Lactuca sativa HOM05D007388 ORTHO05D009421 2.3e-37 159.8 162 53.7
Lj7C227T7 Lonicera japonica HOM05D007388 ORTHO05D009421 3.9e-37 159.1 149 53.0
Aqoxy7G01075 Aquilegia oxysepala HOM05D007388 ORTHO05D009421 3.1e-34 149.4 140 55.7
Nitab4.5_0000268g0090 Nicotiana tabacum HOM05D007388 ORTHO05D009421 2.6e-33 146.4 200 43.5
Lj7C225T7 Lonicera japonica HOM05D007388 ORTHO05D009421 4.5e-33 145.6 149 50.3
vmacro12914 Vaccinium macrocarpon HOM05D007388 ORTHO05D009421 1.0e-32 144.4 152 48.7
AagrBONN_evm.TU.Sc2ySwM_368.3296 Anthoceros agrestis HOM05D007388 ORTHO05D009421 1.8e-21 107.1 178 38.2
unitig_4.g30329 Utricularia gibba HOM05D007388 ORTHO05D009421 1.5e-20 104.0 168 39.3
BNapus_Darmor_BZH_scaffold_38p01020 Brassica napus HOM05D007388 ORTHO05D009421 2.6e-20 103.2 66 78.8
Hma1.2p1_0231F.1_g097390 Hydrangea macrophylla HOM05D007388 ORTHO05D009421 7.0e-18 95.1 99 51.5
Pp3c4_14700 Physcomitrium patens HOM05D007388 ORTHO05D009421 5.0e-16 89.0 191 33.5
Pp3c12_9640 Physcomitrium patens HOM05D007388 ORTHO05D009421 1.1e-15 87.8 201 33.3
Mapoly0129s0003 Marchantia polymorpha HOM05D007388 ORTHO05D009421 1.7e-11 73.9 201 29.4
BolC2t07114H Brassica oleracea HOM05D007388 ORTHO05D043137 4.5e-09 65.9 60 63.3
BraA02t05626Z Brassica rapa HOM05D007388 ORTHO05D043137 1.6e-06 57.4 57 61.4


User provided reference genes

Program Settings