Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
BcaC04g19405 Brassica carinata HOM05D000162 ORTHO05D003288 2.3e-55 220.7 465 100.0
C09p56060 Brassica napus HOM05D000162 ORTHO05D003288 9.5e-49 198.7 251 100.0
BolC9t58473H Brassica oleracea HOM05D000162 ORTHO05D003288 3.6e-48 196.8 251 99.6
A09p64860 Brassica napus HOM05D000162 ORTHO05D003288 1.5e-30 138.3 84 84.5
BraA09t41588Z Brassica rapa HOM05D003784 ORTHO05D004345 1.7e-29 134.8 84 76.2
BcaC04g20649 Brassica carinata HOM05D000162 ORTHO05D003288 1.1e-28 132.1 83 79.5
BolC9t56985H Brassica oleracea HOM05D000162 ORTHO05D003288 1.1e-28 132.1 83 79.5
BraA10t43029Z Brassica rapa HOM05D000162 ORTHO05D000090 1.1e-28 132.1 84 78.6
C09p41050 Brassica napus HOM05D000162 ORTHO05D003288 1.9e-28 131.3 83 78.3
A10p09540 Brassica napus HOM05D000162 ORTHO05D000090 4.2e-28 130.2 83 78.3
BraA09t41752Z Brassica rapa HOM05D001827 ORTHO05D001790 5.4e-28 129.8 84 77.4
A09p64060 Brassica napus HOM05D001827 ORTHO05D001790 1.6e-27 128.3 84 76.2
C08p46920 Brassica napus HOM05D004112 ORTHO05D004739 4.3e-25 120.2 82 70.7
AL1G23620 Arabidopsis lyrata HOM05D000162 ORTHO05D000090 4.8e-24 116.7 73 79.5
C01p39860 Brassica napus HOM05D000162 ORTHO05D003288 6.9e-23 112.8 72 77.8
BolC8t49183H Brassica oleracea HOM05D000162 ORTHO05D000090 6.9e-23 112.8 79 72.2
C08p47400 Brassica napus HOM05D000162 ORTHO05D003288 2.6e-22 110.9 71 78.9
BolC5t33057H Brassica oleracea HOM05D000162 ORTHO05D003288 2.6e-22 110.9 72 76.4
Carub.0001s1249 Capsella rubella HOM05D000162 ORTHO05D000090 3.4e-22 110.5 72 77.8
Carub.0002s0787 Capsella rubella HOM05D000162 ORTHO05D003288 7.6e-22 109.4 78 71.8
C08p15550 Brassica napus HOM05D000162 ORTHO05D000090 1.3e-21 108.6 79 70.9
BolC8t52230H Brassica oleracea HOM05D000162 ORTHO05D003288 8.4e-21 105.9 68 73.5
BolC1t04080H Brassica oleracea HOM05D000162 ORTHO05D003288 3.2e-20 104.0 83 66.3
AL1G24380 Arabidopsis lyrata HOM05D000162 ORTHO05D000090 1.6e-19 101.7 77 68.8
AL2G12790 Arabidopsis lyrata HOM05D000162 ORTHO05D003288 4.6e-19 100.1 84 61.9
CARHR048090 Cardamine hirsuta HOM05D000162 ORTHO05D003288 6.0e-19 99.8 82 62.2
A09p13890 Brassica napus HOM05D000162 ORTHO05D003288 2.5e-17 94.4 74 66.2
C05p38870 Brassica napus HOM05D000162 ORTHO05D003288 4.3e-17 93.6 70 67.1
BcaC05g28279 Brassica carinata HOM05D000162 ORTHO05D003288 5.6e-17 93.2 62 72.6
C05p43270 Brassica napus HOM05D000162 ORTHO05D003288 5.6e-17 93.2 62 72.6
Thhalv10015983m.g Eutrema salsugineum HOM05D000162 ORTHO05D003288 7.4e-17 92.8 84 58.3
C04p29110 Brassica napus HOM05D000162 ORTHO05D003288 1.3e-16 92.0 76 63.2
BolC9t54565H Brassica oleracea HOM05D000162 ORTHO05D003288 1.6e-16 91.7 78 62.8
AT1G63150 Arabidopsis thaliana HOM05D000162 ORTHO05D000090 2.8e-16 90.9 72 65.3
C08p15620 Brassica napus HOM05D000032 ORTHO05D007907 1.1e-15 89.0 62 67.7
CARHR055290 Cardamine hirsuta HOM05D000162 ORTHO05D003288 1.1e-15 89.0 69 62.3
BraA09t41809Z Brassica rapa HOM05D000162 ORTHO05D003288 1.8e-15 88.2 54 87.0
CARHR048540 Cardamine hirsuta HOM05D000162 ORTHO05D003288 9.0e-15 85.9 70 62.9
BolC1t03937H Brassica oleracea HOM05D000162 ORTHO05D003288 1.5e-14 85.1 56 78.6
BcaB08g34255 Brassica carinata HOM05D000162 ORTHO05D003288 5.8e-14 83.2 54 75.9
A09p62690 Brassica napus HOM05D000162 ORTHO05D000090 5.8e-14 83.2 83 55.4
A09p13590 Brassica napus HOM05D000162 ORTHO05D003288 1.7e-13 81.6 65 61.5
BolC3t21476H Brassica oleracea HOM05D000162 ORTHO05D003288 1.7e-13 81.6 68 60.3
BcaB08g34329 Brassica carinata HOM05D000162 ORTHO05D000090 2.2e-13 81.3 50 80.0
FAN05G4416 Fragaria x ananassa HOM05D009709 ORTHO05D003288 3.8e-13 80.5 78 50.0
BraA08t35189Z Brassica rapa HOM05D000032 ORTHO05D007907 4.9e-13 80.1 54 74.1
BcaC07g41681 Brassica carinata HOM05D000162 ORTHO05D000090 8.4e-13 79.3 51 78.4
C08p47120 Brassica napus HOM05D000162 ORTHO05D000090 8.4e-13 79.3 51 78.4
BolC8t52251H Brassica oleracea HOM05D000162 ORTHO05D000090 8.4e-13 79.3 51 78.4
BraA08t35195Z Brassica rapa HOM05D000162 ORTHO05D000090 2.5e-12 77.8 53 73.6
BcaB03g13176 Brassica carinata HOM05D000162 ORTHO05D000090 3.2e-12 77.4 53 73.6
Carub.0001s1230 Capsella rubella HOM05D000162 ORTHO05D000090 3.2e-12 77.4 48 81.2
C08p15560 Brassica napus HOM05D000162 ORTHO05D000090 5.5e-12 76.6 55 70.9
BolC8t49184H Brassica oleracea HOM05D000162 ORTHO05D000090 5.5e-12 76.6 55 70.9
EL10Ac4g09814 Beta vulgaris HOM05D000162 ORTHO05D000090 1.2e-11 75.5 77 48.1
CARHR051050 Cardamine hirsuta HOM05D000162 ORTHO05D003288 4.6e-11 73.6 53 67.9
Sp2g01710 Schrenkiella parvula HOM05D000162 ORTHO05D003288 4.6e-11 73.6 79 50.6
BolC8t49189H Brassica oleracea HOM05D000032 ORTHO05D007907 7.9e-11 72.8 77 51.9
AL2G12380 Arabidopsis lyrata HOM05D000162 ORTHO05D003288 1.0e-10 72.4 53 67.9
AT1G62590 Arabidopsis thaliana HOM05D000162 ORTHO05D000090 1.0e-10 72.4 54 70.4
BcaB03g11740 Brassica carinata HOM05D000162 ORTHO05D003288 1.3e-10 72.0 62 56.5
Carub.0002s0148 Capsella rubella HOM05D000162 ORTHO05D003288 2.3e-10 71.2 53 69.8
Carub.0002s0190 Capsella rubella HOM05D000162 ORTHO05D003288 2.3e-10 71.2 53 69.8
Thhalv10020312m.g Eutrema salsugineum HOM05D000162 ORTHO05D000090 2.3e-10 71.2 52 71.2
AT1G63330 Arabidopsis thaliana HOM05D000162 ORTHO05D003288 3.0e-10 70.9 53 69.8
Thhalv10023344m.g Eutrema salsugineum HOM05D000162 ORTHO05D000090 3.0e-10 70.9 54 64.8
AL2G18840 Arabidopsis lyrata HOM05D000162 ORTHO05D000090 3.9e-10 70.5 54 64.8
EL10Ac4g09866 Beta vulgaris HOM05D000162 ORTHO05D000090 3.9e-10 70.5 75 44.0
CARHR051150 Cardamine hirsuta HOM05D000162 ORTHO05D003288 5.1e-10 70.1 53 67.9
BcaB08g34277 Brassica carinata HOM05D000162 ORTHO05D003288 6.7e-10 69.7 42 78.6
THA.LOC104814143 Tarenaya hassleriana HOM05D000162 ORTHO05D000090 6.7e-10 69.7 51 68.6
Carub.0001s1231 Capsella rubella HOM05D000162 ORTHO05D000090 8.7e-10 69.3 51 64.7
C08p46250 Brassica napus HOM05D000162 ORTHO05D000090 1.5e-09 68.6 43 79.1
BolC8t52174H Brassica oleracea HOM05D000162 ORTHO05D000090 1.5e-09 68.6 43 79.1
Carub.0002s0209 Capsella rubella HOM05D000162 ORTHO05D003288 1.5e-09 68.6 53 66.0
AUR62000354 Chenopodium quinoa HOM05D000162 ORTHO05D003288 1.5e-09 68.6 82 42.7
FAN21G0792 Fragaria x ananassa HOM05D000027 ORTHO05D001163 1.5e-09 68.6 68 47.1
FAN21G0960 Fragaria x ananassa HOM05D000027 ORTHO05D001163 1.5e-09 68.6 68 47.1
BraA09t37036Z Brassica rapa HOM05D000162 ORTHO05D003288 2.5e-09 67.8 52 69.2
BcaB08g34390 Brassica carinata HOM05D027743 ORTHO05D011376 3.3e-09 67.4 41 73.2
BcaC07g41621 Brassica carinata HOM05D000162 ORTHO05D000090 3.3e-09 67.4 40 82.5
BcaC07g41727 Brassica carinata HOM05D000162 ORTHO05D000090 3.3e-09 67.4 38 89.5
CARHR048780 Cardamine hirsuta HOM05D000162 ORTHO05D003288 3.3e-09 67.4 53 62.3
AUR62006890 Chenopodium quinoa HOM05D000162 ORTHO05D003288 3.3e-09 67.4 82 41.5
AL3G36780 Arabidopsis lyrata HOM05D000162 ORTHO05D000090 4.3e-09 67.0 51 66.7
C09p16260 Brassica napus HOM05D000162 ORTHO05D003288 4.3e-09 67.0 53 67.9
BolC9t54536H Brassica oleracea HOM05D000162 ORTHO05D003288 4.3e-09 67.0 53 67.9
Carub.0002s0192 Capsella rubella HOM05D000162 ORTHO05D003288 5.7e-09 66.6 53 67.9
CARHR046830 Cardamine hirsuta HOM05D000162 ORTHO05D003288 5.7e-09 66.6 51 66.7
FAN21G2825 Fragaria x ananassa HOM05D000162 ORTHO05D003288 5.7e-09 66.6 68 45.6
BcaB08g37453 Brassica carinata HOM05D000162 ORTHO05D003288 9.6e-09 65.9 42 71.4
Thhalv10002441m.g Eutrema salsugineum HOM05D000162 ORTHO05D000090 9.6e-09 65.9 43 79.1
RcHm_v2.0_Chr5g0074961 Rosa chinensis HOM05D009709 ORTHO05D003288 9.6e-09 65.9 72 43.1
RcHm_v2.0_Chr5g0075791 Rosa chinensis HOM05D000162 ORTHO05D003288 9.6e-09 65.9 75 45.3
Migut.F00854 Erythranthe guttata HOM05D000162 ORTHO05D000090 1.3e-08 65.5 69 47.8
CARHR048080 Cardamine hirsuta HOM05D000162 ORTHO05D003288 1.6e-08 65.1 54 66.7
BcaC01g03204 Brassica carinata HOM05D000162 ORTHO05D003288 2.1e-08 64.7 78 48.7
CARHR048470 Cardamine hirsuta HOM05D000162 ORTHO05D003288 2.1e-08 64.7 48 68.8
BcaB08g34233 Brassica carinata HOM05D000162 ORTHO05D000090 2.8e-08 64.3 39 76.9
FvH4_3g39650 Fragaria vesca HOM05D000162 ORTHO05D003288 3.7e-08 63.9 78 42.3
RcHm_v2.0_Chr5g0074181 Rosa chinensis HOM05D009709 ORTHO05D003288 3.7e-08 63.9 80 45.0
AL2G12830 Arabidopsis lyrata HOM05D000162 ORTHO05D000090 6.3e-08 63.2 46 69.6
AUR62000649 Chenopodium quinoa HOM05D000162 ORTHO05D003288 6.3e-08 63.2 82 36.6
AUR62000650 Chenopodium quinoa HOM05D000162 ORTHO05D003288 6.3e-08 63.2 82 36.6
AUR62000665 Chenopodium quinoa HOM05D000162 ORTHO05D003288 8.2e-08 62.8 82 36.6
FvH4_3g31580 Fragaria vesca HOM05D009709 ORTHO05D003288 1.1e-07 62.4 68 44.1
Potri.005G046050 Populus trichocarpa HOM05D009709 ORTHO05D003288 1.1e-07 62.4 70 41.4
A08p32720 Brassica napus HOM05D000162 ORTHO05D000090 1.4e-07 62.0 37 75.7
AUR62005166 Chenopodium quinoa HOM05D001413 ORTHO05D003288 1.4e-07 62.0 82 36.6
AUR62005214 Chenopodium quinoa HOM05D000162 ORTHO05D003288 1.4e-07 62.0 82 36.6
AUR62000690 Chenopodium quinoa HOM05D000162 ORTHO05D003288 1.8e-07 61.6 71 40.8
Thhalv10023354m.g Eutrema salsugineum HOM05D000162 ORTHO05D000090 1.8e-07 61.6 46 67.4
AUR62000666 Chenopodium quinoa HOM05D000162 ORTHO05D003288 2.4e-07 61.2 82 35.4
AUR62000678 Chenopodium quinoa HOM05D000162 ORTHO05D003288 2.4e-07 61.2 84 39.3
FAN18G0982 Fragaria x ananassa HOM05D009709 ORTHO05D003288 2.4e-07 61.2 68 42.6
Prupe.6G195700 Prunus persica HOM05D009709 ORTHO05D003288 2.4e-07 61.2 80 37.5
RcHm_v2.0_Chr5g0072871 Rosa chinensis HOM05D009709 ORTHO05D003288 3.1e-07 60.8 76 43.4
AUR62005250 Chenopodium quinoa HOM05D004487 ORTHO05D005483 4.1e-07 60.5 82 34.1
Thhalv10023351m.g Eutrema salsugineum HOM05D000162 ORTHO05D000090 4.1e-07 60.5 46 67.4
RcHm_v2.0_Chr5g0069571 Rosa chinensis HOM05D009709 ORTHO05D010307 4.1e-07 60.5 69 46.4
arahy.Tifrunner.gnm1.ann1.M2HM0V Arachis hypogaea HOM05D018308 ORTHO05D003288 5.3e-07 60.1 82 39.0
BcaC07g41685 Brassica carinata HOM05D000162 ORTHO05D000090 5.3e-07 60.1 43 69.8
BolC8t52255H Brassica oleracea HOM05D000162 ORTHO05D000090 5.3e-07 60.1 43 69.8
BraA09t41633Z Brassica rapa HOM05D000162 ORTHO05D003288 5.3e-07 60.1 31 90.3
Thhalv10023987m.g Eutrema salsugineum HOM05D000162 ORTHO05D000090 6.9e-07 59.7 43 69.8
CARHR012890 Cardamine hirsuta HOM05D000162 ORTHO05D003288 9.0e-07 59.3 45 64.4
Thhalv10023350m.g Eutrema salsugineum HOM05D000162 ORTHO05D000090 9.0e-07 59.3 42 71.4
C08p45770 Brassica napus HOM05D003784 ORTHO05D004345 1.2e-06 58.9 35 77.1
BolC8t52131H Brassica oleracea HOM05D003784 ORTHO05D004345 1.2e-06 58.9 35 77.1
AUR62000710 Chenopodium quinoa HOM05D000162 ORTHO05D003288 1.2e-06 58.9 82 34.1
AUR62005276 Chenopodium quinoa HOM05D000162 ORTHO05D000090 1.2e-06 58.9 80 36.2
Thhalv10023976m.g Eutrema salsugineum HOM05D000162 ORTHO05D000090 1.2e-06 58.9 43 67.4
FAN25G2751 Fragaria x ananassa HOM05D009709 ORTHO05D003288 1.2e-06 58.9 68 44.1
BcaC07g41684 Brassica carinata HOM05D000162 ORTHO05D000090 2.0e-06 58.2 33 87.9
C08p33690 Brassica napus HOM05D000162 ORTHO05D003288 2.0e-06 58.2 40 67.5
C08p47150 Brassica napus HOM05D000162 ORTHO05D000090 2.0e-06 58.2 33 87.9
BolC8t52254H Brassica oleracea HOM05D000162 ORTHO05D000090 2.0e-06 58.2 33 87.9
Thhalv10007258m.g Eutrema salsugineum HOM05D000162 ORTHO05D000090 2.0e-06 58.2 40 72.5
AUR62000680 Chenopodium quinoa HOM05D000162 ORTHO05D003288 2.6e-06 57.8 82 32.9
BolC8t52228H Brassica oleracea HOM05D000162 ORTHO05D000090 3.4e-06 57.4 35 71.4
AUR62005303 Chenopodium quinoa HOM05D000162 ORTHO05D000090 3.4e-06 57.4 80 35.0
FAN16G3455 Fragaria x ananassa HOM05D009709 ORTHO05D003288 3.4e-06 57.4 77 40.3
Rhsim02G0051600 Rhododendron simsii HOM05D026694 ORTHO05D003288 3.4e-06 57.4 78 38.5
A09p63670 Brassica napus HOM05D000162 ORTHO05D000090 4.5e-06 57.0 32 87.5
C08p47160 Brassica napus HOM05D000162 ORTHO05D000090 4.5e-06 57.0 32 87.5
BraA09t41715Z Brassica rapa HOM05D000162 ORTHO05D000090 4.5e-06 57.0 32 87.5
AL1G24190 Arabidopsis lyrata HOM05D000162 ORTHO05D000090 5.9e-06 56.6 34 79.4
BcaB08g34253 Brassica carinata HOM05D000162 ORTHO05D000090 5.9e-06 56.6 32 87.5
AUR62000378 Chenopodium quinoa HOM05D000162 ORTHO05D003288 5.9e-06 56.6 78 38.5
HanXRQChr03g0090811 Helianthus annuus HOM05D000162 ORTHO05D003288 5.9e-06 56.6 79 35.4
CSS0026088 Camellia sinensis var. sinensis HOM05D009709 ORTHO05D003288 7.6e-06 56.2 68 45.6
AL1G24180 Arabidopsis lyrata HOM05D000162 ORTHO05D000090 1.0e-05 55.8 34 79.4
AUR62005260 Chenopodium quinoa HOM05D000162 ORTHO05D003288 1.0e-05 55.8 82 32.9


User provided reference genes

Program Settings