Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
BcaC04g19357 Brassica carinata HOM05D002994 ORTHO05D003337 2.5e-122 442.2 231 100.0
C09p67570 Brassica napus HOM05D002994 ORTHO05D003337 1.8e-101 372.9 248 82.7
A10p27500 Brassica napus HOM05D002994 ORTHO05D003337 1.2e-100 370.2 248 83.1
BraA10t44802Z Brassica rapa HOM05D002994 ORTHO05D003337 1.2e-100 370.2 248 83.1
BolC9t59518H Brassica oleracea HOM05D002994 ORTHO05D003337 3.3e-95 352.1 266 77.4
Sp6g33410 Schrenkiella parvula HOM05D002994 ORTHO05D003337 6.8e-88 327.8 263 73.8
Thhalv10014442m.g Eutrema salsugineum HOM05D002994 ORTHO05D003337 1.2e-81 307.0 260 70.0
AL6G20440 Arabidopsis lyrata HOM05D002994 ORTHO05D003337 2.8e-78 295.8 257 69.6
Aa31LG3G17140 Aethionema arabicum HOM05D002994 ORTHO05D003337 1.3e-67 260.4 261 60.2
THA.LOC104818479 Tarenaya hassleriana HOM05D002994 ORTHO05D003337 6.2e-57 224.9 260 53.8
Carub.0006s0845 Capsella rubella HOM05D002994 ORTHO05D003337 9.9e-55 217.6 195 68.7
AT5G09995 Arabidopsis thaliana HOM05D002994 ORTHO05D003337 2.1e-52 209.9 195 67.7
CARHR203320 Cardamine hirsuta HOM05D002994 ORTHO05D003337 1.3e-51 207.2 197 66.0
CsaV3_6G042440 Cucumis sativus L. HOM05D002994 ORTHO05D003337 2.4e-45 186.4 254 48.4
QL06p031359 Quercus lobata HOM05D002994 ORTHO05D003337 7.1e-45 184.9 210 51.4
TAR381G0007 Trochodendron aralioides HOM05D002994 ORTHO05D003337 2.1e-44 183.3 249 49.0
Duzib147G1014 Durio zibethinus HOM05D002994 ORTHO05D003337 3.3e-42 176.0 212 50.0
Solyc05g051770.3 Solanum lycopersicum HOM05D002994 ORTHO05D003337 5.6e-42 175.3 248 46.8
COL.COLO4_11018 Corchorus olitorius HOM05D002994 ORTHO05D003337 2.1e-41 173.3 250 46.0
Actinidia12207 Actinidia chinensis HOM05D002994 ORTHO05D003337 4.7e-41 172.2 236 49.2
ClCG01G016170 Citrullus lanatus HOM05D002994 ORTHO05D003337 8.1e-41 171.4 250 47.2
PGSC0003DMG400030098 Solanum tuberosum HOM05D002994 ORTHO05D003337 5.3e-40 168.7 248 45.2
Nitab4.5_0004246g0050 Nicotiana tabacum HOM05D002994 ORTHO05D003337 6.9e-40 168.3 246 45.5
THA.LOC104799229 Tarenaya hassleriana HOM05D002994 ORTHO05D003337 9.0e-40 167.9 191 52.9
Sopen05g030240 Solanum pennellii HOM05D002994 ORTHO05D003337 1.2e-39 167.5 248 45.6
Atru.chr4.388 Acer truncatum HOM05D002994 ORTHO05D003337 1.5e-39 167.2 190 51.6
Phvul.009G140000 Phaseolus vulgaris HOM05D002994 ORTHO05D003337 2.0e-39 166.8 206 47.6
Ah.02g124390 Amaranthus hybridus HOM05D004874 ORTHO05D006796 3.4e-39 166.0 247 42.5
vmacro12907 Vaccinium macrocarpon HOM05D002994 ORTHO05D003337 9.9e-39 164.5 231 48.1
MELO3C007487.2 Cucumis melo HOM05D002994 ORTHO05D003337 1.7e-38 163.7 253 44.3
Prupe.6G174000 Prunus persica HOM05D002994 ORTHO05D003337 4.9e-38 162.2 256 45.3
Ca_16890_v3 Cicer arietinum L. HOM05D002994 ORTHO05D003337 6.4e-38 161.8 254 44.5
Lalb_Chr08g0238901 Lupinus albus HOM05D002994 ORTHO05D003337 8.4e-38 161.4 253 43.5
EL10Ac6g14747 Beta vulgaris HOM05D002994 ORTHO05D003337 1.1e-37 161.0 209 46.9
DCAR_011447 Daucus carota HOM05D002994 ORTHO05D003337 1.4e-37 160.6 185 53.5
VMungo1309G0566 Vigna mungo HOM05D002994 ORTHO05D003337 3.2e-37 159.5 206 46.6
FAN19G1893 Fragaria x ananassa HOM05D002994 ORTHO05D003337 2.7e-36 156.4 194 47.9
AUR62016272 Chenopodium quinoa HOM05D002994 ORTHO05D003337 3.5e-36 156.0 243 41.6
Cc07_g16080 Coffea canephora HOM05D002994 ORTHO05D003337 6.0e-36 155.2 251 43.8
CANSAT01G2986 Cannabis sativa HOM05D002994 ORTHO05D003337 7.8e-36 154.8 253 42.7
FAN26G2803 Fragaria x ananassa HOM05D002994 ORTHO05D003337 7.8e-36 154.8 249 41.8
HanXRQChr09g0254781 Helianthus annuus HOM05D002994 ORTHO05D003337 1.0e-35 154.5 219 44.3
Hma1.2p1_0375F.1_g138650 Hydrangea macrophylla HOM05D002994 ORTHO05D003337 1.0e-35 154.5 210 47.6
Haze_25034 Corylus avellana HOM05D002994 ORTHO05D003337 1.7e-35 153.7 211 47.4
FAN23G1765 Fragaria x ananassa HOM05D002994 ORTHO05D003337 1.7e-35 153.7 194 47.4
TWI74G0568 Tripterygium wilfordii HOM05D002994 ORTHO05D003337 1.7e-35 153.7 205 48.3
Gorai.003G046700 Gossypium raimondii HOM05D002994 ORTHO05D003337 2.3e-35 153.3 265 42.6
Lsat_1_v5_gn_4_141101 Lactuca sativa HOM05D002994 ORTHO05D003337 3.0e-35 152.9 221 46.6
ECA232G3626 Erigeron canadensis HOM05D002994 ORTHO05D003337 8.7e-35 151.4 219 48.4
FvH4_1g22170 Fragaria vesca HOM05D002994 ORTHO05D003337 1.1e-34 151.0 194 46.9
Cfa002747 Carpinus fangiana HOM05D002994 ORTHO05D003337 2.5e-34 149.8 209 45.9
Sc16g0004180 Simmondsia chinensis HOM05D002994 ORTHO05D003337 4.3e-34 149.1 188 47.3
Potri.007G081800 Populus trichocarpa HOM05D002994 ORTHO05D003337 5.6e-34 148.7 201 46.3
Lj1g0020979 Lotus japonicus HOM05D002994 ORTHO05D003337 7.3e-34 148.3 247 40.9
Manes.12G141900 Manihot esculenta HOM05D002994 ORTHO05D003337 7.3e-34 148.3 238 41.2
MD15G1333500 Malus domestica HOM05D002994 ORTHO05D003337 1.6e-33 147.1 255 42.7
MBI05_g36589_MAGBIO Magnolia biondii HOM05D002994 ORTHO05D003337 2.1e-33 146.7 255 42.7
RcHm_v2.0_Chr2g0116241 Rosa chinensis HOM05D002994 ORTHO05D003337 4.8e-33 145.6 173 48.0
Migut.H02426 Erythranthe guttata HOM05D002994 ORTHO05D003337 6.2e-33 145.2 250 41.2
CiPaw.03G134800 Carya illinoinensis HOM05D002994 ORTHO05D003337 8.1e-33 144.8 240 41.7
Eucgr.I00329 Eucalyptus grandis HOM05D002994 ORTHO05D003337 1.1e-32 144.4 161 53.4
TPR.G23722 Trifolium pratense HOM05D002994 ORTHO05D003337 1.8e-32 143.7 256 40.2
Gohir.A02G134700 Gossypium hirsutum HOM05D002994 ORTHO05D003337 6.9e-32 141.7 259 42.1
Cpa.g.sc196.5 Carica papaya HOM05D002994 ORTHO05D003337 1.2e-31 141.0 254 39.0
Aqoxy6G00491 Aquilegia oxysepala HOM05D002994 ORTHO05D003337 2.6e-31 139.8 232 43.1
Duzib187G1676 Durio zibethinus HOM05D002994 ORTHO05D003337 2.6e-31 139.8 223 42.2
Peaxi162Scf00167g00017 Petunia axillaris HOM05D002994 ORTHO05D003337 4.5e-31 139.0 246 41.1
Duzib187G0667 Durio zibethinus HOM05D002994 ORTHO05D003337 7.6e-31 138.3 223 42.2
GSVIVG01022218001 Vitis vinifera HOM05D002994 ORTHO05D003337 7.6e-31 138.3 254 41.7
MD01G1018800 Malus domestica HOM05D002994 ORTHO05D003337 1.3e-30 137.5 233 40.8
Actinidia28891 Actinidia chinensis HOM05D002994 ORTHO05D003337 4.9e-30 135.6 237 43.5
Dinv19496 Davidia involucrata HOM05D002994 ORTHO05D003337 4.9e-30 135.6 250 39.2
FAN28G0264 Fragaria x ananassa HOM05D002994 ORTHO05D003337 1.1e-29 134.4 220 40.5
AUR62003311 Chenopodium quinoa HOM05D002994 ORTHO05D003337 3.2e-29 132.9 293 33.1
CSS0042568 Camellia sinensis var. sinensis HOM05D002994 ORTHO05D003337 4.2e-29 132.5 246 39.4
HPP92_016463 Vanilla planifolia HOM05D002994 ORTHO05D003337 4.2e-29 132.5 190 46.8
Oeu028528.1 Olea europaea HOM05D002994 ORTHO05D003337 7.1e-29 131.7 243 39.5
Nitab4.5_0000818g0060 Nicotiana tabacum HOM05D002994 ORTHO05D003337 9.3e-29 131.3 184 46.7
Sabra07G0068600 Salix brachista HOM05D002994 ORTHO05D003337 1.2e-28 131.0 218 40.8
HPP92_027146 Vanilla planifolia HOM05D002994 ORTHO05D003337 1.2e-28 131.0 190 46.3
Rhsim10G0151200 Rhododendron simsii HOM05D002994 ORTHO05D003337 1.6e-28 130.6 158 50.6
PSO447G0304 Papaver somniferum HOM05D002994 ORTHO05D003337 1.3e-27 127.5 186 43.5
Medtr3g094780 Medicago truncatula HOM05D002994 ORTHO05D003337 3.9e-27 125.9 204 41.7
PSO210G0972 Papaver somniferum HOM05D002994 ORTHO05D003337 5.1e-27 125.6 191 42.4
TWI53G0340 Tripterygium wilfordii HOM05D002994 ORTHO05D003337 6.7e-27 125.2 201 41.3
PGR004G2214 Punica granatum HOM05D002994 ORTHO05D003337 1.5e-26 124.0 181 44.2
Ciclev10027170m.g Citrus clementina HOM05D002994 ORTHO05D003337 9.6e-26 121.3 193 39.9
Thecc.01G112000 Theobroma cacao HOM05D002994 ORTHO05D003337 1.8e-24 117.1 171 46.2
arahy.Tifrunner.gnm1.ann1.5U8RR1 Arachis hypogaea HOM05D002994 ORTHO05D003337 1.5e-23 114.0 257 37.7
Nn5g28921 Nelumbo nucifera HOM05D002994 ORTHO05D003337 7.6e-23 111.7 195 43.6
SGA_v2.0_scaffold2G01298 Striga asiatica HOM05D002994 ORTHO05D003337 9.9e-23 111.3 150 44.7
Glyma.06G146000 Glycine max HOM05D002994 ORTHO05D003337 1.3e-22 110.9 131 51.1
Dinv42701 Davidia involucrata HOM05D002994 ORTHO05D003337 2.5e-21 106.7 177 45.8
TPR.G127 Trifolium pratense HOM05D002994 ORTHO05D003337 3.2e-21 106.3 162 44.4
arahy.Tifrunner.gnm1.ann1.TJC05B Arachis hypogaea HOM05D002994 ORTHO05D003337 3.5e-20 102.8 284 34.9
Gohir.D03G045600 Gossypium hirsutum HOM05D002994 ORTHO05D003337 1.5e-18 97.4 193 40.4
SalBow6G3070 Salvia bowleyana HOM05D002994 ORTHO05D003337 9.6e-18 94.7 106 49.1
Sed0003588 Sechium edule HOM05D002994 ORTHO05D003337 1.1e-16 91.3 195 40.0
unitig_899.g14601 Utricularia gibba HOM05D002994 ORTHO05D003337 3.8e-14 82.8 190 36.8
TPR.G18568 Trifolium pratense HOM05D002994 ORTHO05D003337 6.5e-14 82.0 108 45.4
Lsat_1_v5_gn_5_104460 Lactuca sativa HOM05D002994 ORTHO05D003337 1.4e-13 80.9 106 51.9
Hund03545 Selenicereus undatus HOM05D002994 ORTHO05D003337 1.9e-13 80.5 129 44.2
CDE05G2567 Ceratophyllum demersum HOM05D002994 ORTHO05D003337 2.7e-12 76.6 89 55.1
Pp3c19_6090 Physcomitrium patens HOM05D002994 ORTHO05D003337 3.9e-11 72.8 180 33.3
ATR0564G092 Amborella trichopoda HOM05D002994 ORTHO05D003337 2.5e-10 70.1 177 35.6
CDE05G1582 Ceratophyllum demersum HOM05D002994 ORTHO05D003337 3.3e-10 69.7 89 51.7
Mapoly0132s0020 Marchantia polymorpha HOM05D002994 ORTHO05D003337 4.3e-10 69.3 188 31.9
Pp3c21_1120 Physcomitrium patens HOM05D002994 ORTHO05D003337 1.6e-09 67.4 198 27.8
Cc07_g14910 Coffea canephora HOM05D002994 ORTHO05D003337 4.8e-09 65.9 41 82.9
Sp1g07190 Schrenkiella parvula HOM05D002994 ORTHO05D003337 1.1e-08 64.7 152 34.2
Carub.0001s0789 Capsella rubella HOM05D002994 ORTHO05D003337 2.4e-08 63.5 144 33.3
Mapoly0067s0012 Marchantia polymorpha HOM05D002994 ORTHO05D003337 2.4e-08 63.5 140 32.1
AT1G08530 Arabidopsis thaliana HOM05D002994 ORTHO05D003337 4.1e-08 62.8 144 32.6
MD10G1185200 Malus domestica HOM05D002994 ORTHO05D003337 4.1e-08 62.8 172 29.7
arahy.Tifrunner.gnm1.ann1.AV4C6H Arachis hypogaea HOM05D006582 ORTHO05D008313 5.3e-08 62.4 181 28.7
Psat5g065560 Pisum sativum HOM05D002994 ORTHO05D003337 5.3e-08 62.4 156 33.3
AL1G18960 Arabidopsis lyrata HOM05D002994 ORTHO05D003337 6.9e-08 62.0 144 31.9
C05p06630 Brassica napus HOM05D002994 ORTHO05D003337 6.9e-08 62.0 173 30.6
BraA06t23760Z Brassica rapa HOM05D002994 ORTHO05D003337 6.9e-08 62.0 161 30.4
Medtr4g078130 Medicago truncatula HOM05D002994 ORTHO05D003337 1.5e-07 60.8 172 30.2
ATR0561G058 Amborella trichopoda HOM05D002994 ORTHO05D003337 2.0e-07 60.5 157 33.1
Os06g0225400 Oryza sativa ssp. japonica HOM05D002994 ORTHO05D003337 2.0e-07 60.5 213 27.2
CARHR008430 Cardamine hirsuta HOM05D002994 ORTHO05D003337 2.6e-07 60.1 144 31.9
TPR.G19622 Trifolium pratense HOM05D002994 ORTHO05D003337 2.6e-07 60.1 155 33.5
CBR_g41090 Chara braunii HOM05D002994 ORTHO05D003337 3.4e-07 59.7 166 30.1
Thhalv10008466m.g Eutrema salsugineum HOM05D002994 ORTHO05D003337 3.4e-07 59.7 158 31.0
Lalb_Chr03g0024371 Lupinus albus HOM05D002994 ORTHO05D003337 3.4e-07 59.7 241 30.3
RcHm_v2.0_Chr6g0288361 Rosa chinensis HOM05D002994 ORTHO05D003337 3.4e-07 59.7 155 29.0
Duzib177G0745 Durio zibethinus HOM05D002994 ORTHO05D003337 4.5e-07 59.3 152 28.3
Ca_18953_v3 Cicer arietinum L. HOM05D002994 ORTHO05D003337 5.9e-07 58.9 144 31.9
BolC5t29423H Brassica oleracea HOM05D002994 ORTHO05D003337 7.7e-07 58.5 188 27.1
BcaB07g34096 Brassica carinata HOM05D002994 ORTHO05D003337 1.0e-06 58.2 169 30.8
Prupe.8G225000 Prunus persica HOM05D002994 ORTHO05D003337 1.0e-06 58.2 142 28.9
Aa31sc1107G10 Aethionema arabicum HOM05D002994 ORTHO05D003337 1.7e-06 57.4 146 32.2
AagrBONN_evm.TU.Sc2ySwM_117.294 Anthoceros agrestis HOM05D002994 ORTHO05D003337 2.2e-06 57.0 155 34.2
Phvul.011G018900 Phaseolus vulgaris HOM05D002994 ORTHO05D003337 2.2e-06 57.0 191 33.0
MSTRG.9226 Avicennia marina HOM05D002994 ORTHO05D003337 2.9e-06 56.6 175 28.0
Psat7g170080 Pisum sativum HOM05D002994 ORTHO05D003337 2.9e-06 56.6 198 27.8
A06p05520 Brassica napus HOM05D002994 ORTHO05D003337 3.8e-06 56.2 136 30.9
FAN27G0312 Fragaria x ananassa HOM05D002994 ORTHO05D003337 3.8e-06 56.2 162 27.8
Migut.F02068 Erythranthe guttata HOM05D002994 ORTHO05D003337 5.0e-06 55.8 161 28.6
FvH4_2g21680 Fragaria vesca HOM05D002994 ORTHO05D003337 5.0e-06 55.8 151 27.8
FAN24G2383 Fragaria x ananassa HOM05D002994 ORTHO05D003337 5.0e-06 55.8 151 27.8
Oeu007687.2 Olea europaea HOM05D002994 ORTHO05D003337 5.0e-06 55.8 140 30.0
AUR62000658 Chenopodium quinoa HOM05D002994 ORTHO05D003337 6.5e-06 55.5 201 28.4
QL05p081668 Quercus lobata HOM05D002994 ORTHO05D003337 6.5e-06 55.5 194 27.8
unitig_736.g22503 Utricularia gibba HOM05D002994 ORTHO05D003337 6.5e-06 55.5 157 31.2


User provided reference genes

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