Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
BcaC04g19302 Brassica carinata HOM05D006298 ORTHO05D008167 1.2e-52 209.5 100 100.0
BcaB06g28958 Brassica carinata HOM05D006298 ORTHO05D008167 8.7e-24 113.6 86 70.9
BcaC02g07571 Brassica carinata HOM05D006298 ORTHO05D008167 2.4e-21 105.5 86 66.3
A04p28210 Brassica napus HOM05D006298 ORTHO05D008167 2.4e-21 105.5 86 66.3
C04p65570 Brassica napus HOM05D006298 ORTHO05D008167 2.4e-21 105.5 86 66.3
BolC4t28046H Brassica oleracea HOM05D006298 ORTHO05D008167 2.4e-21 105.5 86 66.3
BraA04t18305Z Brassica rapa HOM05D006298 ORTHO05D008167 2.4e-21 105.5 86 66.3
Sp4g19190 Schrenkiella parvula HOM05D006298 ORTHO05D008167 4.0e-21 104.8 56 87.5
Aa31LG5G22130 Aethionema arabicum HOM05D006298 ORTHO05D008167 9.9e-20 100.1 68 73.5
Thhalv10017183m.g Eutrema salsugineum HOM05D006298 ORTHO05D008167 9.9e-20 100.1 86 64.0
CARHR131360 Cardamine hirsuta HOM05D006298 ORTHO05D008167 2.2e-19 99.0 65 75.4
Cpa.g.sc102.32 Carica papaya HOM05D006298 ORTHO05D008167 2.2e-19 99.0 86 62.8
Aqoxy1G01145 Aquilegia oxysepala HOM05D006298 ORTHO05D008167 4.9e-19 97.8 56 82.1
THA.LOC104805233 Tarenaya hassleriana HOM05D006298 ORTHO05D008167 8.4e-19 97.1 56 78.6
Atru.chr8.1795 Acer truncatum HOM05D006298 ORTHO05D008167 1.1e-18 96.7 56 80.4
CsaV3_3G036020 Cucumis sativus L. HOM05D006298 ORTHO05D008167 1.9e-18 95.9 56 82.1
Carub.0004s1875 Capsella rubella HOM05D006298 ORTHO05D008167 2.4e-18 95.5 56 78.6
Ciclev10012651m.g Citrus clementina HOM05D006298 ORTHO05D008167 2.4e-18 95.5 56 80.4
ClCG10G020070 Citrullus lanatus HOM05D006298 ORTHO05D008167 4.2e-18 94.7 56 80.4
Thecc.05G068100 Theobroma cacao HOM05D006298 ORTHO05D008167 7.1e-18 94.0 55 80.0
AL4G33120 Arabidopsis lyrata HOM05D006298 ORTHO05D008167 9.3e-18 93.6 56 78.6
AT2G36895 Arabidopsis thaliana HOM05D006298 ORTHO05D008167 9.3e-18 93.6 56 78.6
Atru.BG.206.p Acer truncatum HOM05D006298 ORTHO05D008167 1.6e-17 92.8 54 79.6
Cfa017623 Carpinus fangiana HOM05D006298 ORTHO05D008167 1.6e-17 92.8 56 78.6
Haze_20529 Corylus avellana HOM05D006298 ORTHO05D008167 1.6e-17 92.8 56 78.6
Duzib106G2039 Durio zibethinus HOM05D006298 ORTHO05D008167 1.6e-17 92.8 59 72.9
MD04G1092500 Malus domestica HOM05D006298 ORTHO05D008167 1.6e-17 92.8 56 80.4
Oeu053684.1 Olea europaea HOM05D006298 ORTHO05D008167 1.6e-17 92.8 56 78.6
Sed0010557 Sechium edule HOM05D006298 ORTHO05D008167 1.6e-17 92.8 56 78.6
TWI53G1706 Tripterygium wilfordii HOM05D006298 ORTHO05D008167 1.6e-17 92.8 56 76.8
TWI77G0409 Tripterygium wilfordii HOM05D006298 ORTHO05D008167 1.6e-17 92.8 56 76.8
CiPaw.09G171800 Carya illinoinensis HOM05D006298 ORTHO05D008167 2.1e-17 92.4 56 78.6
QL07p043135 Quercus lobata HOM05D006298 ORTHO05D008167 2.1e-17 92.4 56 76.8
CANSAT80G2892 Cannabis sativa HOM05D006298 ORTHO05D008167 2.7e-17 92.0 56 78.6
COL.COLO4_26951 Corchorus olitorius HOM05D006298 ORTHO05D008167 2.7e-17 92.0 56 76.8
Duzib093G1320 Durio zibethinus HOM05D006298 ORTHO05D008167 2.7e-17 92.0 56 76.8
Nn6g35281 Nelumbo nucifera HOM05D006298 ORTHO05D008167 2.7e-17 92.0 56 76.8
THA.LOC104807061 Tarenaya hassleriana HOM05D006298 ORTHO05D008167 2.7e-17 92.0 56 75.0
GSVIVG01033647001 Vitis vinifera HOM05D006298 ORTHO05D008167 2.7e-17 92.0 56 76.8
Cc06_g04290 Coffea canephora HOM05D006298 ORTHO05D008167 4.6e-17 91.3 56 76.8
Phvul.007G147500 Phaseolus vulgaris HOM05D006298 ORTHO05D008167 6.0e-17 90.9 56 76.8
Gohir.A01G141763 Gossypium hirsutum HOM05D006298 ORTHO05D008167 7.9e-17 90.5 56 75.0
Gohir.D01G130400 Gossypium hirsutum HOM05D006298 ORTHO05D008167 7.9e-17 90.5 56 75.0
Gorai.002G161800 Gossypium raimondii HOM05D006298 ORTHO05D008167 7.9e-17 90.5 56 75.0
HPP92_022584 Vanilla planifolia HOM05D006298 ORTHO05D008167 7.9e-17 90.5 56 75.0
Actinidia28907 Actinidia chinensis HOM05D006298 ORTHO05D008167 1.0e-16 90.1 56 76.8
CSS0011355 Camellia sinensis var. sinensis HOM05D006298 ORTHO05D008167 1.0e-16 90.1 56 75.0
CSS0035285 Camellia sinensis var. sinensis HOM05D006298 ORTHO05D008167 1.0e-16 90.1 56 75.0
DCAR_017674 Daucus carota HOM05D006298 ORTHO05D008167 1.0e-16 90.1 56 76.8
Hma1.2p1_0205F.1_g086920 Hydrangea macrophylla HOM05D006298 ORTHO05D008167 1.0e-16 90.1 56 75.0
Peaxi162Scf00311g01110 Petunia axillaris HOM05D006298 ORTHO05D008167 1.0e-16 90.1 56 75.0
TAR623G0635 Trochodendron aralioides HOM05D006298 ORTHO05D008167 1.0e-16 90.1 56 75.0
Ca_11509_v3 Cicer arietinum L. HOM05D006298 ORTHO05D008167 1.3e-16 89.7 68 66.2
Eucgr.K02926 Eucalyptus grandis HOM05D006298 ORTHO05D008167 1.8e-16 89.4 55 76.4
Lalb_Chr21g0315031 Lupinus albus HOM05D006298 ORTHO05D008167 1.8e-16 89.4 56 73.2
MBI18_g02636_MAGBIO Magnolia biondii HOM05D006298 ORTHO05D008167 1.8e-16 89.4 56 76.8
TPR.G11270 Trifolium pratense HOM05D006298 ORTHO05D008167 1.8e-16 89.4 56 75.0
VMungo0720G2332 Vigna mungo HOM05D006298 ORTHO05D008167 1.8e-16 89.4 56 75.0
Glyma.10G054900 Glycine max HOM05D006298 ORTHO05D008167 2.3e-16 89.0 56 73.2
Glyma.13G142000 Glycine max HOM05D006298 ORTHO05D008167 2.3e-16 89.0 56 73.2
Rhsim03G0091000 Rhododendron simsii HOM05D006298 ORTHO05D008167 2.3e-16 89.0 56 76.8
Solyc10g083990.2 Solanum lycopersicum HOM05D006298 ORTHO05D008167 2.3e-16 89.0 56 71.4
Sopen10g033440 Solanum pennellii HOM05D006298 ORTHO05D008167 2.3e-16 89.0 56 71.4
PGSC0003DMG400028288 Solanum tuberosum HOM05D006298 ORTHO05D008167 2.3e-16 89.0 56 71.4
SGA_v2.0_scaffold40G15525 Striga asiatica HOM05D006298 ORTHO05D008167 2.3e-16 89.0 56 75.0
Actinidia08768 Actinidia chinensis HOM05D006298 ORTHO05D008167 3.0e-16 88.6 56 75.0
EL10Ac7g16640 Beta vulgaris HOM05D006298 ORTHO05D008167 3.0e-16 88.6 56 75.0
FvH4_6g16470 Fragaria vesca HOM05D006298 ORTHO05D008167 3.0e-16 88.6 56 75.0
FAN02G1782 Fragaria x ananassa HOM05D006298 ORTHO05D008167 3.0e-16 88.6 56 75.0
FAN05G1999 Fragaria x ananassa HOM05D006298 ORTHO05D008167 3.0e-16 88.6 56 75.0
FAN05G2800 Fragaria x ananassa HOM05D006298 ORTHO05D008167 3.0e-16 88.6 56 75.0
FAN09G1272 Fragaria x ananassa HOM05D006298 ORTHO05D008167 3.0e-16 88.6 56 75.0
FAN14G4061 Fragaria x ananassa HOM05D006298 ORTHO05D008167 3.0e-16 88.6 56 75.0
Manes.08G011200 Manihot esculenta HOM05D006298 ORTHO05D008167 3.0e-16 88.6 56 75.0
RcHm_v2.0_Chr3g0470361 Rosa chinensis HOM05D006298 ORTHO05D008167 3.0e-16 88.6 56 75.0
Sabra16G0098900 Salix brachista HOM05D006298 ORTHO05D008167 3.0e-16 88.6 56 75.0
Prupe.7G128900 Prunus persica HOM05D006298 ORTHO05D008167 3.9e-16 88.2 56 75.0
Sc20g0005540 Simmondsia chinensis HOM05D006298 ORTHO05D008167 3.9e-16 88.2 64 68.8
ATR0219G012 Amborella trichopoda HOM05D006298 ORTHO05D008167 5.1e-16 87.8 55 74.5
Psat6g073640 Pisum sativum HOM05D006298 ORTHO05D008167 5.1e-16 87.8 56 73.2
Potri.016G099300 Populus trichocarpa HOM05D006298 ORTHO05D008167 5.1e-16 87.8 56 75.0
vmacro07297 Vaccinium macrocarpon HOM05D006298 ORTHO05D008167 5.1e-16 87.8 56 75.0
Migut.J00651 Erythranthe guttata HOM05D006298 ORTHO05D008167 8.7e-16 87.0 56 76.8
Lj4g0025039 Lotus japonicus HOM05D006298 ORTHO05D008167 1.1e-15 86.7 56 73.2
PGR142G1273 Punica granatum HOM05D006298 ORTHO05D008167 1.1e-15 86.7 56 75.0
PSO339G0145 Papaver somniferum HOM05D006298 ORTHO05D008167 1.9e-15 85.9 56 69.6
unitig_26.g9235 Utricularia gibba HOM05D006298 ORTHO05D008167 1.9e-15 85.9 56 73.2
Lj2A120T46 Lonicera japonica HOM05D006298 ORTHO05D008167 2.5e-15 85.5 56 73.2
Nitab4.5_0000814g0050 Nicotiana tabacum HOM05D006298 ORTHO05D008167 7.4e-15 84.0 56 69.6
Os03g0152600 Oryza sativa ssp. japonica HOM05D006298 ORTHO05D008167 7.4e-15 84.0 54 72.2
Nitab4.5_0000063g0130 Nicotiana tabacum HOM05D006298 ORTHO05D008167 9.6e-15 83.6 56 69.6
AUR62040336 Chenopodium quinoa HOM05D006298 ORTHO05D008167 1.3e-14 83.2 65 61.5
AUR62042070 Chenopodium quinoa HOM05D006298 ORTHO05D008167 1.6e-14 82.8 65 61.5
AUR62042510 Chenopodium quinoa HOM05D006298 ORTHO05D008167 1.6e-14 82.8 65 61.5
AUR62044331 Chenopodium quinoa HOM05D006298 ORTHO05D008167 1.6e-14 82.8 65 61.5
arahy.Tifrunner.gnm1.ann1.GSM08A Arachis hypogaea HOM05D006298 ORTHO05D008167 2.1e-14 82.4 56 69.6
arahy.Tifrunner.gnm1.ann1.UZM884 Arachis hypogaea HOM05D006298 ORTHO05D008167 2.1e-14 82.4 56 69.6
MD12G1110600 Malus domestica HOM05D006298 ORTHO05D008167 2.1e-14 82.4 48 79.2
PSO063G5537 Papaver somniferum HOM05D006298 ORTHO05D008167 2.1e-14 82.4 56 67.9
Ah.08g211590 Amaranthus hybridus HOM05D006298 ORTHO05D008167 2.8e-14 82.0 56 66.1
CDE04G2630 Ceratophyllum demersum HOM05D006298 ORTHO05D008167 2.8e-14 82.0 56 67.9
Mapoly0063s0087 Marchantia polymorpha HOM05D006298 ORTHO05D008167 2.8e-14 82.0 64 56.2
CDE03G0133 Ceratophyllum demersum HOM05D006298 ORTHO05D008167 3.7e-14 81.6 56 67.9
HanXRQChr11g0350481 Helianthus annuus HOM05D006298 ORTHO05D008167 4.8e-14 81.3 55 70.9
Lsat_1_v5_gn_1_51681 Lactuca sativa HOM05D006298 ORTHO05D008167 8.1e-14 80.5 54 70.4
Pp3c6_17550 Physcomitrium patens HOM05D006298 ORTHO05D008167 4.5e-12 74.7 70 51.4
BcaC02g07570 Brassica carinata HOM05D006298 ORTHO05D008167 1.3e-11 73.2 38 84.2
SEGI_37587 Sequoiadendron giganteum HOM05D006298 ORTHO05D008167 2.9e-11 72.0 50 70.0
Thhalv10000465m.g Eutrema salsugineum HOM05D006298 ORTHO05D008167 6.5e-11 70.9 59 67.8
ECA248G3050 Erigeron canadensis HOM05D006298 ORTHO05D008167 1.1e-10 70.1 48 70.8
SMO119G0246 Selaginella moellendorffii HOM05D006298 ORTHO05D008167 1.2e-09 66.6 55 54.5
Cre11.g469100 Chlamydomonas reinhardtii HOM05D006298 ORTHO05D008167 5.7e-07 57.8 53 50.9


User provided reference genes

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