Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
BcaC04g19271 Brassica carinata HOM05D000333 ORTHO05D000190 7.1e-62 240.4 115 100.0
C09p65870 Brassica napus HOM05D000333 ORTHO05D000190 7.1e-62 240.4 115 100.0
BolC9t59409H Brassica oleracea HOM05D000333 ORTHO05D000190 7.1e-62 240.4 115 100.0
A10p26700 Brassica napus HOM05D000333 ORTHO05D000190 1.9e-59 232.3 115 96.5
BraA10t44728Z Brassica rapa HOM05D000333 ORTHO05D000190 1.9e-59 232.3 115 96.5
BcaC04g19272 Brassica carinata HOM05D000333 ORTHO05D000190 5.4e-54 214.2 116 92.2
AL6G21570 Arabidopsis lyrata HOM05D000333 ORTHO05D000190 6.0e-45 184.1 131 73.3
Thhalv10015251m.g Eutrema salsugineum HOM05D000333 ORTHO05D000190 2.5e-43 178.7 129 72.9
Carub.0006s0947 Capsella rubella HOM05D000333 ORTHO05D000190 3.3e-43 178.3 131 71.8
AT5G10970 Arabidopsis thaliana HOM05D000333 ORTHO05D000190 1.6e-42 176.0 131 69.5
Sp6g32520 Schrenkiella parvula HOM05D000333 ORTHO05D000190 6.2e-42 174.1 131 72.5
CARHR202320 Cardamine hirsuta HOM05D000333 ORTHO05D000190 1.1e-35 153.3 130 65.4
Thhalv10004784m.g Eutrema salsugineum HOM05D000333 ORTHO05D000190 7.1e-30 134.0 139 55.4
THA.LOC104814998 Tarenaya hassleriana HOM05D000333 ORTHO05D000190 2.7e-29 132.1 129 58.9
Carub.0006s2298 Capsella rubella HOM05D000333 ORTHO05D000190 4.6e-29 131.3 132 54.5
Sp2g22370 Schrenkiella parvula HOM05D000333 ORTHO05D000190 8.7e-28 127.1 140 55.0
BcaB04g19813 Brassica carinata HOM05D000333 ORTHO05D000190 1.5e-27 126.3 130 54.6
BcaB07g29937 Brassica carinata HOM05D000333 ORTHO05D000190 9.6e-27 123.6 135 53.3
A02p39920 Brassica napus HOM05D000333 ORTHO05D000190 1.3e-26 123.2 136 52.9
BraA02t08955Z Brassica rapa HOM05D000333 ORTHO05D000190 1.3e-26 123.2 136 52.9
THA.LOC104799013 Tarenaya hassleriana HOM05D000333 ORTHO05D000190 8.2e-26 120.6 130 54.6
AL6G36820 Arabidopsis lyrata HOM05D000333 ORTHO05D000190 1.8e-25 119.4 133 52.6
BcaC03g17923 Brassica carinata HOM05D000333 ORTHO05D000190 2.4e-25 119.0 136 49.3
C02p59820 Brassica napus HOM05D000333 ORTHO05D000190 2.4e-25 119.0 136 49.3
BolC2t12039H Brassica oleracea HOM05D000333 ORTHO05D000190 2.4e-25 119.0 136 49.3
C09p06940 Brassica napus HOM05D000333 ORTHO05D000190 4.1e-25 118.2 138 49.3
Aa31LG3G16160 Aethionema arabicum HOM05D000333 ORTHO05D000190 1.2e-24 116.7 140 55.0
BolC9t53612H Brassica oleracea HOM05D000333 ORTHO05D000190 2.0e-24 115.9 141 48.2
A09p06270 Brassica napus HOM05D000333 ORTHO05D000190 7.6e-24 114.0 138 47.8
CARHR188330 Cardamine hirsuta HOM05D000333 ORTHO05D000190 7.6e-24 114.0 137 50.4
AT5G25160 Arabidopsis thaliana HOM05D000333 ORTHO05D000190 2.2e-23 112.5 136 50.0
A06p35910 Brassica napus HOM05D000333 ORTHO05D000190 5.0e-23 111.3 131 50.4
BraA06t26516Z Brassica rapa HOM05D000333 ORTHO05D000190 5.0e-23 111.3 131 50.4
BcaC04g23575 Brassica carinata HOM05D000333 ORTHO05D000190 1.1e-22 110.2 143 46.9
BraA09t36272Z Brassica rapa HOM05D000333 ORTHO05D000190 4.1e-17 91.7 69 66.7
Gohir.A05G057800 Gossypium hirsutum HOM05D000333 ORTHO05D000190 1.1e-14 83.6 140 45.0
Gorai.009G060900 Gossypium raimondii HOM05D000333 ORTHO05D000190 1.1e-14 83.6 140 45.0
Gohir.D05G059800 Gossypium hirsutum HOM05D000333 ORTHO05D000190 1.4e-14 83.2 140 44.3
COL.COLO4_18932 Corchorus olitorius HOM05D000333 ORTHO05D000190 2.7e-13 79.0 120 40.0
Thecc.09G017800 Theobroma cacao HOM05D000333 ORTHO05D000190 2.7e-13 79.0 142 43.0
GSVIVG01035905001 Vitis vinifera HOM05D000333 ORTHO05D000190 1.8e-12 76.3 141 39.0
Duzib150G0172 Durio zibethinus HOM05D000333 ORTHO05D000190 3.0e-12 75.5 142 40.1
Duzib187G0847 Durio zibethinus HOM05D000333 ORTHO05D000190 3.9e-12 75.1 140 42.1
ClCG08G013640 Citrullus lanatus HOM05D000333 ORTHO05D000190 1.5e-11 73.2 127 42.5
Gohir.A13G180200 Gossypium hirsutum HOM05D000333 ORTHO05D000190 2.0e-11 72.8 138 41.3
Gohir.D13G188300 Gossypium hirsutum HOM05D000333 ORTHO05D000190 2.0e-11 72.8 138 41.3
Gorai.010G243700 Gossypium raimondii HOM05D000333 ORTHO05D000190 2.0e-11 72.8 138 41.3
Manes.16G127300 Manihot esculenta HOM05D000333 ORTHO05D000190 2.0e-11 72.8 141 41.8
Ah.10g035600 Amaranthus hybridus HOM05D000333 ORTHO05D000190 2.5e-11 72.4 136 37.5
Peaxi162Scf00332g00312 Petunia axillaris HOM05D000333 ORTHO05D000190 2.5e-11 72.4 126 40.5
Cc04_g04950 Coffea canephora HOM05D000333 ORTHO05D000190 3.3e-11 72.0 140 39.3
AUR62031584 Chenopodium quinoa HOM05D000333 ORTHO05D000190 5.7e-11 71.2 136 39.0
Nn2g12286 Nelumbo nucifera HOM05D000333 ORTHO05D000190 1.3e-10 70.1 138 38.4
AUR62012460 Chenopodium quinoa HOM05D000333 ORTHO05D000190 2.8e-10 68.9 136 38.2
Duzib168G1567 Durio zibethinus HOM05D000333 ORTHO05D000190 6.3e-10 67.8 138 38.4
Sc09g0010440 Simmondsia chinensis HOM05D000333 ORTHO05D000190 6.3e-10 67.8 134 38.8
Actinidia25454 Actinidia chinensis HOM05D000333 ORTHO05D000190 8.2e-10 67.4 119 40.3
CSS0019930 Camellia sinensis var. sinensis HOM05D000333 ORTHO05D000190 8.2e-10 67.4 137 35.8
CSS0029220 Camellia sinensis var. sinensis HOM05D000333 ORTHO05D000190 8.2e-10 67.4 137 35.8
EL10Ac2g04137 Beta vulgaris HOM05D000333 ORTHO05D000190 1.1e-09 67.0 128 37.5
Eucgr.C01667 Eucalyptus grandis HOM05D000333 ORTHO05D000190 1.4e-09 66.6 64 56.2
Hma1.2p1_0230F.1_g097270 Hydrangea macrophylla HOM05D000333 ORTHO05D000190 1.4e-09 66.6 129 41.1
TAR626G0231 Trochodendron aralioides HOM05D000741 ORTHO05D000506 1.4e-09 66.6 117 41.9
Ciclev10010448m.g Citrus clementina HOM05D000333 ORTHO05D000190 1.8e-09 66.2 80 51.2
Potri.018G021400 Populus trichocarpa HOM05D000333 ORTHO05D000190 1.8e-09 66.2 140 40.0
Potri.006G261700 Populus trichocarpa HOM05D000333 ORTHO05D000190 2.4e-09 65.9 139 38.8
MSTRG.4688 Avicennia marina HOM05D000333 ORTHO05D000190 3.1e-09 65.5 133 39.1
Cpa.g.sc127.8 Carica papaya HOM05D000333 ORTHO05D000190 3.1e-09 65.5 145 35.2
Ah.10g035610 Amaranthus hybridus HOM05D000333 ORTHO05D000190 4.1e-09 65.1 138 35.5
MSTRG.11174 Avicennia marina HOM05D000333 ORTHO05D000190 4.1e-09 65.1 131 41.2
BNapus_Darmor_BZH_scaffold_241p00020 Brassica napus HOM05D000333 ORTHO05D000190 5.3e-09 64.7 110 39.1
TPR.G8452 Trifolium pratense HOM05D000333 ORTHO05D000190 5.3e-09 64.7 111 41.4
TAR383G0539 Trochodendron aralioides HOM05D000333 ORTHO05D000190 5.3e-09 64.7 124 41.1
Ah.16g104900 Amaranthus hybridus HOM05D000333 ORTHO05D000190 6.9e-09 64.3 131 38.2
Hma1.2p1_0109F.1_g052400 Hydrangea macrophylla HOM05D000333 ORTHO05D000190 6.9e-09 64.3 137 38.0
Potri.001G047500 Populus trichocarpa HOM05D000333 ORTHO05D000190 6.9e-09 64.3 134 36.6
Sabra06G0204200 Salix brachista HOM05D000333 ORTHO05D000190 6.9e-09 64.3 138 41.3
Manes.11G064700 Manihot esculenta HOM05D000333 ORTHO05D000190 9.1e-09 63.9 120 40.0
Oeu023841.1 Olea europaea HOM05D000333 ORTHO05D000190 1.5e-08 63.2 115 41.7
FAN20G1192 Fragaria x ananassa HOM05D000333 ORTHO05D000190 2.0e-08 62.8 125 40.8
FAN20G3054 Fragaria x ananassa HOM05D000333 ORTHO05D000190 2.0e-08 62.8 125 40.8
Oeu050397.1 Olea europaea HOM05D000333 ORTHO05D000190 2.0e-08 62.8 115 40.0
Gohir.A06G183200 Gossypium hirsutum HOM05D000333 ORTHO05D000190 2.6e-08 62.4 133 38.3
Nitab4.5_0001454g0130 Nicotiana tabacum HOM05D000333 ORTHO05D000190 4.5e-08 61.6 125 40.8
Nitab4.5_0009423g0030 Nicotiana tabacum HOM05D000333 ORTHO05D000190 4.5e-08 61.6 126 40.5
RcHm_v2.0_Chr2g0133371 Rosa chinensis HOM05D000333 ORTHO05D000190 4.5e-08 61.6 120 40.8
CiPaw.01G253300 Carya illinoinensis HOM05D000333 ORTHO05D000190 5.9e-08 61.2 132 42.4
MELO3C011290.2 Cucumis melo HOM05D000333 ORTHO05D000190 5.9e-08 61.2 107 41.1
VMungo0331G0638 Vigna mungo HOM05D000333 ORTHO05D000190 5.9e-08 61.2 120 40.0
Manes.04G104400 Manihot esculenta HOM05D000333 ORTHO05D000190 7.7e-08 60.8 120 36.7
Sopen03g035980 Solanum pennellii HOM05D000333 ORTHO05D000190 7.7e-08 60.8 94 45.7
ClCG07G012130 Citrullus lanatus HOM05D000333 ORTHO05D000190 1.0e-07 60.5 64 59.4
Solyc03g117070.1 Solanum lycopersicum HOM05D000333 ORTHO05D000190 1.0e-07 60.5 94 45.7
TWI18G0965 Tripterygium wilfordii HOM05D000333 ORTHO05D000190 1.0e-07 60.5 117 39.3
FAN15G1353 Fragaria x ananassa HOM05D000333 ORTHO05D000190 1.3e-07 60.1 125 38.4
Gorai.010G222700 Gossypium raimondii HOM05D000333 ORTHO05D000190 1.3e-07 60.1 136 38.2
Aqoxy7G03484 Aquilegia oxysepala HOM05D000333 ORTHO05D000190 2.2e-07 59.3 140 35.7
CsaV3_2G032400 Cucumis sativus L. HOM05D000333 ORTHO05D000190 2.2e-07 59.3 137 38.7
MD09G1224100 Malus domestica HOM05D000333 ORTHO05D000190 2.2e-07 59.3 129 34.9
QL02p019815 Quercus lobata HOM05D000333 ORTHO05D000190 2.2e-07 59.3 131 37.4
Ciclev10026234m.g Citrus clementina HOM05D000333 ORTHO05D000190 2.9e-07 58.9 140 35.0
Potri.003G180600 Populus trichocarpa HOM05D000333 ORTHO05D000190 2.9e-07 58.9 122 35.2
MELO3C017834.2 Cucumis melo HOM05D000333 ORTHO05D000190 3.8e-07 58.5 63 55.6
CsaV3_4G002030 Cucumis sativus L. HOM05D000333 ORTHO05D000190 3.8e-07 58.5 63 55.6
DCAR_025578 Daucus carota HOM05D000333 ORTHO05D000190 3.8e-07 58.5 122 35.2
Eucgr.J03101 Eucalyptus grandis HOM05D000333 ORTHO05D000190 3.8e-07 58.5 120 36.7
Glyma.04G062600 Glycine max HOM05D000333 ORTHO05D000190 3.8e-07 58.5 130 37.7
Gohir.D07G035000 Gossypium hirsutum HOM05D000333 ORTHO05D000190 3.8e-07 58.5 99 43.4
RcHm_v2.0_Chr6g0299711 Rosa chinensis HOM05D000333 ORTHO05D000190 3.8e-07 58.5 118 37.3
CiPaw.07G228300 Carya illinoinensis HOM05D000333 ORTHO05D000190 5.0e-07 58.2 134 36.6
FvH4_2g40850 Fragaria vesca HOM05D000333 ORTHO05D000190 5.0e-07 58.2 124 37.1
FAN02G4128 Fragaria x ananassa HOM05D000333 ORTHO05D000190 5.0e-07 58.2 128 36.7
Glyma.08G217100 Glycine max HOM05D000333 ORTHO05D000190 5.0e-07 58.2 123 38.2
MBI14_g30674_MAGBIO Magnolia biondii HOM05D000333 ORTHO05D000190 5.0e-07 58.2 139 32.4
Actinidia13203 Actinidia chinensis HOM05D000333 ORTHO05D000190 6.5e-07 57.8 129 35.7
Gohir.D06G189900 Gossypium hirsutum HOM05D000333 ORTHO05D000190 6.5e-07 57.8 133 36.8
TAR625G1141 Trochodendron aralioides HOM05D000333 ORTHO05D000190 6.5e-07 57.8 139 33.8
Gorai.001G036700 Gossypium raimondii HOM05D000333 ORTHO05D000190 8.5e-07 57.4 99 43.4
MD17G1221300 Malus domestica HOM05D000333 ORTHO05D000190 8.5e-07 57.4 87 40.2
SGA_v2.0_scaffold5G02760 Striga asiatica HOM05D000333 ORTHO05D000190 8.5e-07 57.4 116 37.1
Haze_16653 Corylus avellana HOM05D000333 ORTHO05D000190 1.1e-06 57.0 128 36.7
Sed0003295 Sechium edule HOM05D000333 ORTHO05D000190 1.1e-06 57.0 133 36.1
FAN05G2386 Fragaria x ananassa HOM05D000333 ORTHO05D000190 1.4e-06 56.6 128 36.7
FAN09G3007 Fragaria x ananassa HOM05D000333 ORTHO05D000190 1.4e-06 56.6 128 36.7
Glyma.06G063700 Glycine max HOM05D000333 ORTHO05D000190 1.4e-06 56.6 130 36.9
TAR633G0248 Trochodendron aralioides HOM05D000333 ORTHO05D000190 1.4e-06 56.6 136 36.0
Lalb_Chr23g0268331 Lupinus albus HOM05D000333 ORTHO05D000190 1.9e-06 56.2 145 39.3
TWI75G1250 Tripterygium wilfordii HOM05D000333 ORTHO05D000190 1.9e-06 56.2 120 40.8
Duzib235G1042 Durio zibethinus HOM05D000333 ORTHO05D000190 2.5e-06 55.8 135 36.3
Lsat_1_v5_gn_6_19901 Lactuca sativa HOM05D000333 ORTHO05D000190 2.5e-06 55.8 148 33.8
Lj5C78T21 Lonicera japonica HOM05D000333 ORTHO05D000190 2.5e-06 55.8 126 31.7
Medtr1g013130 Medicago truncatula HOM05D000333 ORTHO05D000190 2.5e-06 55.8 130 36.9
Dinv16475 Davidia involucrata HOM05D000333 ORTHO05D000190 3.2e-06 55.5 79 48.1
Sabra01G0032800 Salix brachista HOM05D000333 ORTHO05D000190 3.2e-06 55.5 122 36.9
TWI12G1026 Tripterygium wilfordii HOM05D000333 ORTHO05D000190 3.2e-06 55.5 116 37.1
FvH4_6g28840 Fragaria vesca HOM05D000333 ORTHO05D000190 4.2e-06 55.1 128 35.9
FAN14G2736 Fragaria x ananassa HOM05D000333 ORTHO05D000190 4.2e-06 55.1 128 35.9
Lj8P735T51 Lonicera japonica HOM05D000333 ORTHO05D000190 4.2e-06 55.1 119 40.3
CiPaw.08G007300 Carya illinoinensis HOM05D000333 ORTHO05D000190 5.5e-06 54.7 146 35.6
Prupe.1G391200 Prunus persica HOM05D000333 ORTHO05D000190 5.5e-06 54.7 131 35.1
Sabra03G0132100 Salix brachista HOM05D000333 ORTHO05D000190 5.5e-06 54.7 124 35.5
Gohir.A07G031200 Gossypium hirsutum HOM05D000333 ORTHO05D000190 7.2e-06 54.3 99 42.4
HanXRQChr02g0050051 Helianthus annuus HOM05D000333 ORTHO05D000190 7.2e-06 54.3 155 34.8
QL05p035270 Quercus lobata HOM05D000333 ORTHO05D000190 7.2e-06 54.3 83 44.6
Rhsim02G0207600 Rhododendron simsii HOM05D000333 ORTHO05D000190 7.2e-06 54.3 69 44.9
vmacro19044 Vaccinium macrocarpon HOM05D000333 ORTHO05D000190 7.2e-06 54.3 70 45.7
ECA233G3135 Erigeron canadensis HOM05D000333 ORTHO05D000190 9.4e-06 53.9 158 31.6
Glyma.07G025300 Glycine max HOM05D000333 ORTHO05D000190 9.4e-06 53.9 121 37.2


User provided reference genes

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