Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
BcaC04g19208 Brassica carinata HOM05D006609 ORTHO05D008551 1.6e-138 496.1 253 100.0
BolC9t59347H Brassica oleracea HOM05D006609 ORTHO05D008551 1.6e-138 496.1 253 100.0
C09p65180 Brassica napus HOM05D006609 ORTHO05D008551 8.9e-134 480.3 253 97.6
BraA10t44672Z Brassica rapa HOM05D006609 ORTHO05D008551 2.2e-132 475.7 254 96.5
AL6G22350 Arabidopsis lyrata HOM05D006609 ORTHO05D008551 5.6e-128 461.1 254 92.5
Sp6g31980 Schrenkiella parvula HOM05D006609 ORTHO05D008551 9.6e-128 460.3 254 91.7
A10p26110 Brassica napus HOM05D006609 ORTHO05D008551 2.1e-127 459.1 280 86.4
Thhalv10014470m.g Eutrema salsugineum HOM05D006609 ORTHO05D008551 4.7e-127 458.0 254 91.3
CARHR201580 Cardamine hirsuta HOM05D006609 ORTHO05D008551 6.4e-124 447.6 254 89.0
A02p01130 Brassica napus HOM05D006609 ORTHO05D008551 4.2e-123 444.9 257 88.3
BraA02t05092Z Brassica rapa HOM05D006609 ORTHO05D008551 5.4e-123 444.5 258 88.0
BcaC03g13384 Brassica carinata HOM05D006609 ORTHO05D008551 6.0e-122 441.0 258 87.6
C02p05310 Brassica napus HOM05D006609 ORTHO05D008551 6.0e-122 441.0 258 87.6
BolC2t06479H Brassica oleracea HOM05D006609 ORTHO05D008551 2.3e-121 439.1 256 87.9
Aa31LG3G15550 Aethionema arabicum HOM05D006609 ORTHO05D008551 1.3e-116 423.3 252 83.3
Carub.0006s1012 Capsella rubella HOM05D006609 ORTHO05D008551 1.3e-113 413.3 233 90.1
BcaB08g37036 Brassica carinata HOM05D006609 ORTHO05D008551 3.4e-109 398.7 257 82.9
THA.LOC104808485 Tarenaya hassleriana HOM05D006609 ORTHO05D008551 7.1e-107 391.0 254 77.2
AT5G11640 Arabidopsis thaliana HOM05D006609 ORTHO05D008551 9.0e-94 347.4 190 92.1
Gohir.D05G047900 Gossypium hirsutum HOM05D006609 ORTHO05D008551 1.1e-83 313.9 258 60.9
Thecc.09G046100 Theobroma cacao HOM05D006609 ORTHO05D008551 1.8e-81 306.6 258 59.7
GSVIVG01035613001 Vitis vinifera HOM05D006609 ORTHO05D008551 4.4e-80 302.0 257 58.8
Duzib168G0257 Durio zibethinus HOM05D006609 ORTHO05D008551 4.8e-79 298.5 259 57.9
Actinidia13339 Actinidia chinensis HOM05D006609 ORTHO05D008551 3.4e-77 292.4 248 58.9
FvH4_2g35350 Fragaria vesca HOM05D006609 ORTHO05D008551 6.5e-76 288.1 259 56.4
Potri.006G237600 Populus trichocarpa HOM05D006609 ORTHO05D008551 1.4e-75 287.0 241 58.5
CSS0000910 Camellia sinensis var. sinensis HOM05D006609 ORTHO05D008551 2.5e-75 286.2 258 56.6
CiPaw.07G203500 Carya illinoinensis HOM05D006609 ORTHO05D008551 2.5e-75 286.2 258 56.6
RcHm_v2.0_Chr6g0306561 Rosa chinensis HOM05D006609 ORTHO05D008551 1.2e-74 283.9 259 56.4
Gorai.009G049200 Gossypium raimondii HOM05D006609 ORTHO05D008551 1.6e-74 283.5 253 57.7
Manes.16G074700 Manihot esculenta HOM05D006609 ORTHO05D008551 2.7e-74 282.7 256 54.7
TWI63G1544 Tripterygium wilfordii HOM05D006609 ORTHO05D008551 2.7e-74 282.7 254 57.1
MD15G1092400 Malus domestica HOM05D006609 ORTHO05D008551 6.1e-74 281.6 260 56.5
Cfa013375 Carpinus fangiana HOM05D006609 ORTHO05D008551 2.3e-73 279.6 257 54.5
COL.COLO4_20980 Corchorus olitorius HOM05D006609 ORTHO05D008551 4.4e-72 275.4 258 53.1
TAR626G1286 Trochodendron aralioides HOM05D006609 ORTHO05D008551 4.4e-72 275.4 245 57.6
BcaNung02663 Brassica carinata HOM05D006609 ORTHO05D008551 2.2e-71 273.1 152 88.8
Ciclev10009282m.g Citrus clementina HOM05D006609 ORTHO05D008551 2.2e-71 273.1 251 54.6
MD08G1113000 Malus domestica HOM05D006609 ORTHO05D008551 3.7e-71 272.3 259 54.8
FAN15G1983 Fragaria x ananassa HOM05D006609 ORTHO05D008551 4.1e-70 268.9 258 54.7
Nn8g39112 Nelumbo nucifera HOM05D006609 ORTHO05D008551 3.5e-69 265.8 260 53.8
Aqoxy7G01461 Aquilegia oxysepala HOM05D006609 ORTHO05D008551 4.5e-69 265.4 254 53.5
Lj1g0027455 Lotus japonicus HOM05D006609 ORTHO05D008551 4.5e-69 265.4 249 54.6
Hund03393 Selenicereus undatus HOM05D006609 ORTHO05D008551 4.5e-69 265.4 245 56.3
Sopen12g031720 Solanum pennellii HOM05D006609 ORTHO05D008551 7.7e-69 264.6 245 55.1
arahy.Tifrunner.gnm1.ann1.TZ2NYQ Arachis hypogaea HOM05D006609 ORTHO05D008551 1.0e-68 264.2 260 55.0
Glyma.17G192700 Glycine max HOM05D006609 ORTHO05D008551 1.0e-68 264.2 252 54.0
arahy.Tifrunner.gnm1.ann1.519I88 Arachis hypogaea HOM05D006609 ORTHO05D008551 1.3e-68 263.8 260 55.0
FAN27G2415 Fragaria x ananassa HOM05D006609 ORTHO05D008551 1.3e-68 263.8 259 53.7
Lsat_1_v5_gn_6_22680 Lactuca sativa HOM05D006609 ORTHO05D008551 1.3e-68 263.8 240 57.5
ClCG11G015120 Citrullus lanatus HOM05D006609 ORTHO05D008551 1.7e-68 263.5 250 54.0
Migut.A00197 Erythranthe guttata HOM05D006609 ORTHO05D008551 2.9e-68 262.7 244 54.1
MELO3C003467.2 Cucumis melo HOM05D006609 ORTHO05D008551 5.0e-68 261.9 250 54.4
Atru.chr7.2079 Acer truncatum HOM05D006609 ORTHO05D008551 6.5e-68 261.5 212 58.5
Psat6g037080 Pisum sativum HOM05D006609 ORTHO05D008551 6.5e-68 261.5 252 54.4
CANSAT25G3446 Cannabis sativa HOM05D006609 ORTHO05D008551 1.1e-67 260.8 259 52.9
MBI04_g06585_MAGBIO Magnolia biondii HOM05D006609 ORTHO05D008551 1.1e-67 260.8 257 51.8
MSTRG.25911 Avicennia marina HOM05D006609 ORTHO05D008551 1.5e-67 260.4 244 54.1
Ca_03364_v3 Cicer arietinum L. HOM05D006609 ORTHO05D008551 2.5e-67 259.6 252 54.4
PGR031G0123 Punica granatum HOM05D006609 ORTHO05D008551 4.2e-67 258.8 253 54.2
FAN20G1237 Fragaria x ananassa HOM05D006609 ORTHO05D008551 5.5e-67 258.5 259 53.3
Lalb_Chr24g0402671 Lupinus albus HOM05D006609 ORTHO05D008551 5.5e-67 258.5 246 54.5
Peaxi162Scf00064g01521 Petunia axillaris HOM05D006609 ORTHO05D008551 9.4e-67 257.7 247 52.2
Sabra06G0185800 Salix brachista HOM05D006609 ORTHO05D008551 9.4e-67 257.7 292 47.3
CAN.G208.62 Capsicum annuum HOM05D006609 ORTHO05D008551 1.2e-66 257.3 245 53.9
Eucgr.C00603 Eucalyptus grandis HOM05D006609 ORTHO05D008551 1.6e-66 256.9 230 59.1
TPR.G24534 Trifolium pratense HOM05D006609 ORTHO05D008551 1.6e-66 256.9 252 52.8
Cc08_g09720 Coffea canephora HOM05D006609 ORTHO05D008551 2.1e-66 256.5 247 55.5
Dinv27894 Davidia involucrata HOM05D006609 ORTHO05D008551 2.7e-66 256.1 240 57.5
VMungo0647G0700 Vigna mungo HOM05D006609 ORTHO05D008551 6.1e-66 255.0 245 55.1
Hma1.2p1_1138F.1_g260815 Hydrangea macrophylla HOM05D006609 ORTHO05D008551 8.0e-66 254.6 239 55.6
Medtr1g007120 Medicago truncatula HOM05D006609 ORTHO05D008551 8.0e-66 254.6 250 53.6
Sc09g0009360 Simmondsia chinensis HOM05D006609 ORTHO05D008551 1.0e-65 254.2 245 54.7
Ah.16g105840 Amaranthus hybridus HOM05D006609 ORTHO05D008551 1.8e-65 253.4 248 51.6
CDE02G0347 Ceratophyllum demersum HOM05D006609 ORTHO05D008551 3.0e-65 252.7 243 52.7
Sed0023433 Sechium edule HOM05D006609 ORTHO05D008551 5.2e-65 251.9 250 50.4
Gohir.A05G046200 Gossypium hirsutum HOM05D006609 ORTHO05D008551 1.5e-64 250.4 212 59.9
AUR62042442 Chenopodium quinoa HOM05D006609 ORTHO05D008551 5.7e-64 248.4 245 51.8
Phvul.001G063300 Phaseolus vulgaris HOM05D006609 ORTHO05D008551 9.7e-64 247.7 251 51.0
QL12p041270 Quercus lobata HOM05D006609 ORTHO05D008551 1.7e-63 246.9 230 53.9
Rhsim02G0176600 Rhododendron simsii HOM05D006609 ORTHO05D008551 2.8e-63 246.1 235 53.6
RhsimUnG0061900 Rhododendron simsii HOM05D006609 ORTHO05D008551 2.8e-63 246.1 235 53.6
Haze_21897 Corylus avellana HOM05D006609 ORTHO05D008551 9.1e-62 241.1 257 49.4
ATR0705G113 Amborella trichopoda HOM05D006609 ORTHO05D008551 1.6e-61 240.4 246 51.2
PSO173G0006 Papaver somniferum HOM05D006609 ORTHO05D008551 1.6e-61 240.4 257 47.1
PSO824G0011 Papaver somniferum HOM05D006609 ORTHO05D008551 1.6e-61 240.4 256 48.0
HPP92_021778 Vanilla planifolia HOM05D006609 ORTHO05D008551 2.0e-61 240.0 242 50.8
Os01g0200400 Oryza sativa ssp. japonica HOM05D006609 ORTHO05D008551 1.3e-60 237.3 237 53.2
Solyc12g095820.3 Solanum lycopersicum HOM05D006609 ORTHO05D008551 1.3e-60 237.3 211 55.9
Zm00001eb337980 Zea mays HOM05D006609 ORTHO05D008551 2.9e-60 236.1 243 53.9
PGSC0003DMG400029395 Solanum tuberosum HOM05D006609 ORTHO05D008551 5.0e-60 235.3 211 55.9
CsaV3_3G048520 Cucumis sativus L. HOM05D006609 ORTHO05D008551 1.1e-59 234.2 229 53.7
SalBow4G0386 Salvia bowleyana HOM05D006609 ORTHO05D008551 9.4e-59 231.1 225 53.3
SGA_v2.0_scaffold243G44286 Striga asiatica HOM05D006609 ORTHO05D008551 2.0e-56 223.4 243 48.1
Nitab4.5_0001737g0100 Nicotiana tabacum HOM05D006609 ORTHO05D008551 7.7e-53 211.5 250 47.2
HanXRQChr13g0402211 Helianthus annuus HOM05D006609 ORTHO05D008551 1.1e-51 207.6 215 50.7
Cpa.g.sc78.16 Carica papaya HOM05D006609 ORTHO05D008551 1.2e-50 204.1 224 51.8
Nitab4.5_0001309g0120 Nicotiana tabacum HOM05D006609 ORTHO05D008551 1.6e-50 203.8 329 37.1
DCAR_000757 Daucus carota HOM05D006609 ORTHO05D010582 1.1e-46 191.0 242 45.9
Prupe.1G447200 Prunus persica HOM05D006609 ORTHO05D008551 5.9e-45 185.3 173 52.0
AUR62009264 Chenopodium quinoa HOM05D006609 ORTHO05D008551 5.0e-44 182.2 170 54.1
ECA233G1748 Erigeron canadensis HOM05D006609 ORTHO05D008551 2.5e-35 153.3 132 61.4
unitig_93.g30708 Utricularia gibba HOM05D006609 ORTHO05D008551 3.1e-33 146.4 246 39.0
Lsat_1_v5_gn_5_12101 Lactuca sativa HOM05D006609 ORTHO05D008551 2.9e-31 139.8 136 52.2
vmacro11054 Vaccinium macrocarpon HOM05D006609 ORTHO05D008551 4.6e-29 132.5 113 62.8
FAN24G0356 Fragaria x ananassa HOM05D006609 ORTHO05D008551 1.0e-28 131.3 116 54.3
FAN24G3337 Fragaria x ananassa HOM05D006609 ORTHO05D008551 1.0e-28 131.3 116 54.3
EL10Ac2g04002 Beta vulgaris HOM05D006609 ORTHO05D008551 1.7e-23 114.0 205 34.6
HanXRQChr16g0519661 Helianthus annuus HOM05D006609 ORTHO05D008551 8.1e-18 95.1 128 45.3
PRCOL_00006038 Prasinoderma coloniale HOM05D006609 ORTHO05D008551 3.1e-17 93.2 198 30.3
SMO144G0045 Selaginella moellendorffii HOM05D006609 ORTHO05D008551 3.1e-17 93.2 154 39.0
FAN24G1965 Fragaria x ananassa HOM05D006609 ORTHO05D008551 1.5e-16 90.9 88 53.4
SEGI_38144 Sequoiadendron giganteum HOM05D006609 ORTHO05D008551 7.6e-16 88.6 95 47.4
SEGI_39152 Sequoiadendron giganteum HOM05D006609 ORTHO05D008551 4.6e-13 79.3 104 40.4
Cre10.g426400 Chlamydomonas reinhardtii HOM05D006609 ORTHO05D008551 7.3e-11 72.0 223 26.9
QL09p008974 Quercus lobata HOM05D006609 ORTHO05D008551 9.6e-11 71.6 62 51.6
Haze_26101 Corylus avellana HOM05D006609 ORTHO05D008551 3.2e-06 56.6 76 42.1


User provided reference genes

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