Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
BcaC04g19152 Brassica carinata HOM05D005688 ORTHO05D006630 2.7e-167 592.0 320 100.0
BolC9t59237H Brassica oleracea HOM05D005688 ORTHO05D006630 3.3e-141 505.4 351 77.5
C09p63990 Brassica napus HOM05D000918 ORTHO05D006630 6.2e-140 501.1 347 77.2
BraA10t44572Z Brassica rapa HOM05D005688 ORTHO05D006630 4.9e-137 491.5 355 75.5
A10p25100 Brassica napus HOM05D000918 ORTHO05D006630 3.5e-135 485.3 348 75.3
Sp6g30880 Schrenkiella parvula HOM05D005688 ORTHO05D006630 1.1e-131 473.8 358 71.5
Thhalv10013944m.g Eutrema salsugineum HOM05D005688 ORTHO05D006630 8.9e-131 470.7 357 71.4
CARHR200370 Cardamine hirsuta HOM05D005688 ORTHO05D006630 1.7e-129 466.5 355 70.4
BraA03t09920Z Brassica rapa HOM05D000918 ORTHO05D006630 2.9e-129 465.7 356 71.1
AL6G23700 Arabidopsis lyrata HOM05D005688 ORTHO05D006630 3.8e-129 465.3 355 70.4
AT5G13100 Arabidopsis thaliana HOM05D005688 ORTHO05D006630 3.2e-128 462.2 355 69.9
A03p05810 Brassica napus HOM05D000918 ORTHO05D000791 3.2e-128 462.2 356 70.5
C03p06760 Brassica napus HOM05D000918 ORTHO05D006630 4.2e-128 461.8 356 70.5
BolC3t13183H Brassica oleracea HOM05D000918 ORTHO05D006630 4.2e-128 461.8 356 70.5
Carub.0006s1127 Capsella rubella HOM05D005688 ORTHO05D006630 7.1e-128 461.1 354 69.8
BcaB01g05377 Brassica carinata HOM05D005688 ORTHO05D006630 6.6e-126 454.5 348 70.7
Aa31LG3G14570 Aethionema arabicum HOM05D005688 ORTHO05D006630 4.3e-125 451.8 353 69.7
THA.LOC104810209 Tarenaya hassleriana HOM05D005688 ORTHO05D006630 3.2e-112 409.1 356 62.6
Cfa009390 Carpinus fangiana HOM05D005688 ORTHO05D006630 2.4e-107 392.9 351 60.7
TWI75G1512 Tripterygium wilfordii HOM05D005688 ORTHO05D006630 5.8e-106 388.3 353 60.3
Haze_12451 Corylus avellana HOM05D005688 ORTHO05D006630 1.3e-105 387.1 351 60.1
Manes.12G008200 Manihot esculenta HOM05D005688 ORTHO05D006630 6.5e-105 384.8 361 57.9
Prupe.1G222300 Prunus persica HOM05D005688 ORTHO05D006630 1.1e-104 384.0 362 57.5
MELO3C017746.2 Cucumis melo HOM05D005688 ORTHO05D006630 1.9e-104 383.3 366 59.3
Duzib251G0174 Durio zibethinus HOM05D005688 ORTHO05D006630 4.2e-104 382.1 351 59.5
TWI36G1544 Tripterygium wilfordii HOM05D005688 ORTHO05D006630 5.5e-104 381.7 353 60.9
Ciclev10032000m.g Citrus clementina HOM05D005688 ORTHO05D006630 9.3e-104 380.9 350 58.9
MD16G1123300 Malus domestica HOM05D005688 ORTHO05D006630 9.3e-104 380.9 360 57.5
CsaV3_4G002970 Cucumis sativus L. HOM05D005688 ORTHO05D006630 4.6e-103 378.6 360 58.6
Gohir.A04G100300 Gossypium hirsutum HOM05D005688 ORTHO05D006630 4.6e-103 378.6 350 58.6
Gohir.D04G139300 Gossypium hirsutum HOM05D005688 ORTHO05D006630 6.0e-103 378.3 350 58.9
Gorai.012G124400 Gossypium raimondii HOM05D005688 ORTHO05D006630 1.8e-102 376.7 350 58.9
CiPaw.05G106800 Carya illinoinensis HOM05D005688 ORTHO05D006630 5.1e-102 375.2 359 58.5
Thecc.02G201300 Theobroma cacao HOM05D005688 ORTHO05D006630 4.3e-101 372.1 351 57.5
Potri.003G168300 Populus trichocarpa HOM05D005688 ORTHO05D006630 9.6e-101 370.9 357 57.1
Nitab4.5_0002277g0010 Nicotiana tabacum HOM05D005688 ORTHO05D006630 2.8e-100 369.4 348 57.2
Duzib248G1308 Durio zibethinus HOM05D005688 ORTHO05D006630 3.7e-100 369.0 353 58.1
arahy.Tifrunner.gnm1.ann1.97E8EB Arachis hypogaea HOM05D005688 ORTHO05D006630 1.1e-99 367.5 374 58.8
arahy.Tifrunner.gnm1.ann1.N9VQT0 Arachis hypogaea HOM05D005688 ORTHO05D006630 1.1e-99 367.5 374 58.8
Lj6A830T28 Lonicera japonica HOM05D005688 ORTHO05D006630 1.8e-99 366.7 349 57.0
FAN07G0693 Fragaria x ananassa HOM05D005688 ORTHO05D006630 3.1e-99 365.9 365 54.8
Sed0014060 Sechium edule HOM05D005688 ORTHO05D006630 3.1e-99 365.9 363 57.3
Potri.001G059700 Populus trichocarpa HOM05D005688 ORTHO05D006630 4.1e-99 365.5 356 55.9
FAN17G3098 Fragaria x ananassa HOM05D005688 ORTHO05D006630 5.3e-99 365.2 365 54.8
Lalb_Chr10g0092021 Lupinus albus HOM05D005688 ORTHO05D006630 5.3e-99 365.2 366 56.6
Glyma.18G284500 Glycine max HOM05D005688 ORTHO05D006630 6.9e-99 364.8 363 59.0
QL03p051598 Quercus lobata HOM05D005688 ORTHO05D006630 6.9e-99 364.8 361 55.7
COL.COLO4_27347 Corchorus olitorius HOM05D005688 ORTHO05D006630 9.0e-99 364.4 354 58.8
FvH4_4g23370 Fragaria vesca HOM05D005688 ORTHO05D006630 9.0e-99 364.4 355 56.1
FAN12G1631 Fragaria x ananassa HOM05D005688 ORTHO05D006630 9.0e-99 364.4 355 56.1
CANSAT80G0816 Cannabis sativa HOM05D005688 ORTHO05D006630 2.6e-98 362.8 356 56.5
RcHm_v2.0_Chr4g0429761 Rosa chinensis HOM05D005688 ORTHO05D006630 2.6e-98 362.8 353 56.4
Hma1.2p1_0065F.1_g035040 Hydrangea macrophylla HOM05D005688 ORTHO05D006630 3.4e-98 362.5 356 55.1
PGR102G0765 Punica granatum HOM05D005688 ORTHO05D006630 3.4e-98 362.5 352 57.7
Solyc05g015980.3 Solanum lycopersicum HOM05D005688 ORTHO05D006630 5.9e-98 361.7 348 57.5
Glyma.02G097000 Glycine max HOM05D005688 ORTHO05D006630 1.0e-97 360.9 365 59.7
Nitab4.5_0000251g0050 Nicotiana tabacum HOM05D005688 ORTHO05D006630 1.0e-97 360.9 350 56.3
Phvul.008G017000 Phaseolus vulgaris HOM05D005688 ORTHO05D006630 1.0e-97 360.9 364 55.8
Sopen05g011970 Solanum pennellii HOM05D005688 ORTHO05D006630 1.0e-97 360.9 348 57.5
PGSC0003DMG400010801 Solanum tuberosum HOM05D005688 ORTHO05D006630 2.9e-97 359.4 348 57.2
CSS0038243 Camellia sinensis var. sinensis HOM05D005688 ORTHO05D006630 3.8e-97 359.0 353 56.7
Ca_07133_v3 Cicer arietinum L. HOM05D005688 ORTHO05D006630 5.0e-97 358.6 361 54.3
Ca_28122_v3 Cicer arietinum L. HOM05D005688 ORTHO05D006630 5.0e-97 358.6 361 54.3
Lalb_Chr17g0336391 Lupinus albus HOM05D005688 ORTHO05D006630 6.5e-97 358.2 361 55.4
Lj1g0000862 Lotus japonicus HOM05D005688 ORTHO05D006630 1.1e-96 357.5 377 57.8
Medtr7g022390 Medicago truncatula HOM05D005688 ORTHO05D006630 1.1e-96 357.5 360 54.4
CSS0036763 Camellia sinensis var. sinensis HOM05D005688 ORTHO05D006630 1.4e-96 357.1 349 55.9
Rhsim12G0023600 Rhododendron simsii HOM05D005688 ORTHO05D006630 1.9e-96 356.7 362 54.1
Dinv17591 Davidia involucrata HOM05D005688 ORTHO05D006630 3.2e-96 355.9 357 54.6
vmacro01046 Vaccinium macrocarpon HOM05D005688 ORTHO05D006630 3.2e-96 355.9 377 55.7
TAR629G3099 Trochodendron aralioides HOM05D005688 ORTHO05D006630 1.2e-95 354.0 352 55.1
Dinv11693 Davidia involucrata HOM05D005688 ORTHO05D006630 4.6e-95 352.1 352 54.8
HanXRQChr17g0568911 Helianthus annuus HOM05D005688 ORTHO05D006630 1.8e-94 350.1 343 55.4
Eucgr.B03525 Eucalyptus grandis HOM05D005688 ORTHO05D006630 2.3e-94 349.7 356 55.6
DCAR_024659 Daucus carota HOM05D005688 ORTHO05D006630 8.7e-94 347.8 347 53.9
TPR.G2946 Trifolium pratense HOM05D005688 ORTHO05D006630 1.5e-93 347.1 343 54.5
Migut.E00005 Erythranthe guttata HOM05D005688 ORTHO05D006630 1.9e-93 346.7 349 55.6
Lsat_1_v5_gn_4_280 Lactuca sativa HOM05D005688 ORTHO05D006630 4.3e-93 345.5 363 53.2
Actinidia09624 Actinidia chinensis HOM05D005688 ORTHO05D006630 5.7e-93 345.1 348 53.2
Sc04g0010310 Simmondsia chinensis HOM05D005688 ORTHO05D006630 5.7e-93 345.1 352 54.3
Hund06107 Selenicereus undatus HOM05D005688 ORTHO05D006630 9.7e-93 344.4 355 52.7
Aqoxy3G01629 Aquilegia oxysepala HOM05D005688 ORTHO05D006630 1.3e-92 344.0 355 52.4
MSTRG.481 Avicennia marina HOM05D005688 ORTHO05D006630 4.1e-91 339.0 342 54.1
ECA234G1377 Erigeron canadensis HOM05D005688 ORTHO05D006630 6.9e-91 338.2 351 53.0
Peaxi162Scf00128g01523 Petunia axillaris HOM05D005688 ORTHO05D006630 6.9e-91 338.2 351 55.0
unitig_26.g10416 Utricularia gibba HOM05D005688 ORTHO05D006630 6.9e-91 338.2 348 54.9
TAR371G0171 Trochodendron aralioides HOM05D005688 ORTHO05D006630 1.5e-90 337.0 348 54.9
Nn3g16394 Nelumbo nucifera HOM05D005688 ORTHO05D006630 2.6e-90 336.3 355 52.1
SalBow2G0527 Salvia bowleyana HOM05D005688 ORTHO05D006630 2.6e-90 336.3 343 52.8
Sabra03G0123400 Salix brachista HOM05D005688 ORTHO05D006630 3.8e-89 332.4 436 47.2
ClCG07G015390 Citrullus lanatus HOM05D005688 ORTHO05D006630 8.5e-89 331.3 331 58.0
MBI07_g18747_MAGBIO Magnolia biondii HOM05D005688 ORTHO05D006630 1.6e-87 327.0 352 52.8
Actinidia39795 Actinidia chinensis HOM05D005688 ORTHO05D006630 6.1e-87 325.1 297 57.2
Ah.03g135940 Amaranthus hybridus HOM05D005688 ORTHO05D006630 3.9e-86 322.4 366 50.5
Sed0011472 Sechium edule HOM05D005688 ORTHO05D006630 1.1e-85 320.9 332 55.7
PSO017G1106 Papaver somniferum HOM05D005688 ORTHO05D006630 4.4e-85 318.9 356 50.3
PSO478G0501 Papaver somniferum HOM05D005688 ORTHO05D006630 5.7e-85 318.5 360 50.3
EL10Ac6g13540 Beta vulgaris HOM05D005688 ORTHO05D006630 2.8e-84 316.2 360 50.0
AUR62028899 Chenopodium quinoa HOM05D005688 ORTHO05D006630 6.3e-84 315.1 357 50.1
Psat3g187080 Pisum sativum HOM05D005688 ORTHO05D006630 1.4e-83 313.9 324 53.1
CAN.G163.3 Capsicum annuum HOM05D005688 ORTHO05D006630 6.9e-83 311.6 321 54.2
Zm00001eb127020 Zea mays HOM05D005688 ORTHO05D006630 2.6e-82 309.7 352 50.0
CDE05G3530 Ceratophyllum demersum HOM05D005688 ORTHO05D006630 1.3e-81 307.4 348 49.1
Os01g0102500 Oryza sativa ssp. japonica HOM05D005688 ORTHO05D006630 2.5e-80 303.1 259 57.5
Sabra01G0042800 Salix brachista HOM05D005688 ORTHO05D006630 9.4e-80 301.2 325 52.9
ATR0582G145 Amborella trichopoda HOM05D005688 ORTHO05D006630 2.1e-79 300.1 345 49.3
CDE05G2516 Ceratophyllum demersum HOM05D005688 ORTHO05D006630 3.0e-78 296.2 348 48.0
Ah.02g130750 Amaranthus hybridus HOM05D005688 ORTHO05D006630 3.1e-75 286.2 351 47.0
SEGI_28374 Sequoiadendron giganteum HOM05D005688 ORTHO05D006630 1.6e-74 283.9 260 58.1
SEGI_34677 Sequoiadendron giganteum HOM05D005688 ORTHO05D006630 5.0e-73 278.9 258 54.7
AUR62005654 Chenopodium quinoa HOM05D005688 ORTHO05D006630 4.2e-72 275.8 228 61.0
CiPaw.06G105500 Carya illinoinensis HOM05D005688 ORTHO05D006630 5.2e-70 268.9 290 55.9
Manes.13G008600 Manihot esculenta HOM05D005688 ORTHO05D006630 4.4e-69 265.8 289 54.3
Atru.chr11.2370 Acer truncatum HOM05D005688 ORTHO05D006630 9.7e-69 264.6 282 57.1
Cpa.g.sc99.54 Carica papaya HOM05D005688 ORTHO05D006630 2.8e-68 263.1 194 67.0
ATR0579G080 Amborella trichopoda HOM05D005688 ORTHO05D006630 8.2e-68 261.5 263 54.8
MBI04_g07882_MAGBIO Magnolia biondii HOM05D005688 ORTHO05D006630 1.8e-67 260.4 258 52.3
HPP92_011533 Vanilla planifolia HOM05D005688 ORTHO05D006630 5.3e-67 258.8 321 48.9
AagrBONN_evm.TU.Sc2ySwM_340.298 Anthoceros agrestis HOM05D005688 ORTHO05D006630 3.5e-66 256.1 261 52.9
CBR_g40425 Chara braunii HOM05D005688 ORTHO05D006630 5.9e-66 255.4 245 56.3
GSVIVG01000906001 Vitis vinifera HOM05D005688 ORTHO05D006630 2.2e-65 253.4 194 65.5
Cc11_g17240 Coffea canephora HOM05D005688 ORTHO05D006630 8.5e-65 251.5 194 64.9
Mapoly0015s0197 Marchantia polymorpha HOM05D005688 ORTHO05D006630 1.5e-64 250.8 262 51.5
SMO367G0614 Selaginella moellendorffii HOM05D005688 ORTHO05D006630 3.6e-63 246.1 258 46.9
HPP92_011539 Vanilla planifolia HOM05D005688 ORTHO05D006630 8.8e-62 241.5 351 43.3
unitig_8.g2899 Utricularia gibba HOM05D005688 ORTHO05D006630 4.1e-59 232.6 152 73.0
Actinidia08051 Actinidia chinensis HOM05D005688 ORTHO05D006630 2.8e-55 219.9 126 80.2
Nn4g22254 Nelumbo nucifera HOM05D005688 ORTHO05D006630 2.0e-42 177.2 100 80.0
Actinidia34019 Actinidia chinensis HOM05D005688 ORTHO05D006630 8.0e-39 165.2 154 55.8
Actinidia30626 Actinidia chinensis HOM05D001095 ORTHO05D000976 5.4e-35 152.5 209 44.5
BcaB03g14943 Brassica carinata HOM05D005688 ORTHO05D006630 8.6e-33 145.2 73 93.2
BcaB07g33260 Brassica carinata HOM05D005688 ORTHO05D006630 4.3e-32 142.9 73 91.8
Oeu012651.1 Olea europaea HOM05D005688 ORTHO05D006630 6.6e-25 119.0 170 42.4
Cpa.g.sc99.53 Carica papaya HOM05D005688 ORTHO05D006630 1.6e-23 114.4 138 55.8
unitig_8.g2900 Utricularia gibba HOM05D005688 ORTHO05D006630 2.4e-22 110.5 164 42.7
GSVIVG01010535001 Vitis vinifera HOM05D005688 ORTHO05D006630 2.4e-22 110.5 88 65.9
Aqoxy1G03766 Aquilegia oxysepala HOM05D005688 ORTHO05D006630 2.1e-18 97.4 155 38.7
VMungo1215G2942 Vigna mungo HOM05D005688 ORTHO05D006630 6.6e-17 92.4 69 63.8
Actinidia08052 Actinidia chinensis HOM05D005688 ORTHO05D006630 1.5e-16 91.3 154 39.0
QL06p005212 Quercus lobata HOM05D005688 ORTHO05D006630 2.3e-09 67.4 36 83.3
Actinidia05457 Actinidia chinensis HOM05D005688 ORTHO05D054920 1.4e-06 58.2 71 50.7


User provided reference genes

Program Settings