Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
BcaC04g19133 Brassica carinata HOM05D004972 ORTHO05D006309 1.1e-127 459.9 225 100.0
BolC9t59224H Brassica oleracea HOM05D004972 ORTHO05D006309 1.1e-127 459.9 225 100.0
A10p24970 Brassica napus HOM05D004972 ORTHO05D006309 2.5e-127 458.8 225 99.6
C09p63840 Brassica napus HOM05D004972 ORTHO05D006309 2.5e-127 458.8 225 99.6
BraA10t44559Z Brassica rapa HOM05D004972 ORTHO05D006309 5.5e-127 457.6 225 99.1
Thhalv10014602m.g Eutrema salsugineum HOM05D004972 ORTHO05D006309 4.8e-123 444.5 225 95.6
AL6G23850 Arabidopsis lyrata HOM05D004972 ORTHO05D006309 2.6e-121 438.7 225 94.2
Carub.0006s1141 Capsella rubella HOM05D004972 ORTHO05D006309 2.6e-121 438.7 225 94.7
Sp6g30750 Schrenkiella parvula HOM05D004972 ORTHO05D006309 1.3e-120 436.4 225 93.3
AT5G13240 Arabidopsis thaliana HOM05D004972 ORTHO05D006309 6.5e-120 434.1 225 93.8
CARHR200210 Cardamine hirsuta HOM05D004972 ORTHO05D006309 5.2e-117 424.5 227 91.2
THA.LOC104825471 Tarenaya hassleriana HOM05D004972 ORTHO05D006309 4.1e-106 388.3 225 83.6
Manes.06G062200 Manihot esculenta HOM05D004972 ORTHO05D006309 1.9e-95 352.8 225 75.6
CiPaw.05G247000 Carya illinoinensis HOM05D004972 ORTHO05D006309 2.8e-94 349.0 225 75.1
Potri.010G115800 Populus trichocarpa HOM05D004972 ORTHO05D006309 8.0e-94 347.4 225 74.7
Aa31LG3G14420 Aethionema arabicum HOM05D004972 ORTHO05D006309 1.0e-93 347.1 225 74.2
Ciclev10016597m.g Citrus clementina HOM05D004972 ORTHO05D006309 1.0e-93 347.1 225 75.1
Cfa008573 Carpinus fangiana HOM05D004972 ORTHO05D006309 1.8e-93 346.3 225 76.4
COL.COLO4_10156 Corchorus olitorius HOM05D004972 ORTHO05D006309 3.1e-93 345.5 225 76.0
Eucgr.G02212 Eucalyptus grandis HOM05D004972 ORTHO05D006309 4.0e-93 345.1 225 75.1
FAN07G2072 Fragaria x ananassa HOM05D004972 ORTHO05D006309 6.8e-93 344.4 225 73.8
MD13G1028600 Malus domestica HOM05D004972 ORTHO05D006309 1.2e-92 343.6 225 73.3
Thecc.04G114900 Theobroma cacao HOM05D004972 ORTHO05D006309 2.6e-92 342.4 225 75.6
Dinv16188 Davidia involucrata HOM05D004972 ORTHO05D006309 3.4e-92 342.0 225 73.8
MD16G1031300 Malus domestica HOM05D004972 ORTHO05D006309 9.8e-92 340.5 225 72.4
RcHm_v2.0_Chr4g0433731 Rosa chinensis HOM05D004972 ORTHO05D006309 1.7e-91 339.7 225 71.6
FAN12G1431 Fragaria x ananassa HOM05D004972 ORTHO05D006309 2.2e-91 339.3 225 73.3
FAN12G3562 Fragaria x ananassa HOM05D004972 ORTHO05D006309 2.2e-91 339.3 225 73.3
Gohir.D12G057200 Gossypium hirsutum HOM05D004972 ORTHO05D006309 3.7e-91 338.6 225 74.7
Nitab4.5_0004692g0050 Nicotiana tabacum HOM05D004972 ORTHO05D006309 3.7e-91 338.6 223 72.2
GSVIVG01011786001 Vitis vinifera HOM05D004972 ORTHO05D006309 4.9e-91 338.2 225 73.8
CANSAT01G2336 Cannabis sativa HOM05D004972 ORTHO05D006309 6.4e-91 337.8 225 73.3
FAN22G0152 Fragaria x ananassa HOM05D004972 ORTHO05D006309 6.4e-91 337.8 225 72.4
Sopen05g004230 Solanum pennellii HOM05D004972 ORTHO05D006309 6.4e-91 337.8 225 71.6
FvH4_4g26160 Fragaria vesca HOM05D004972 ORTHO05D006309 8.3e-91 337.4 225 72.9
Peaxi162Scf00205g00614 Petunia axillaris HOM05D004972 ORTHO05D006309 8.3e-91 337.4 225 71.6
Solyc05g008400.4 Solanum lycopersicum HOM05D004972 ORTHO05D006309 1.1e-90 337.0 225 71.1
FAN17G1326 Fragaria x ananassa HOM05D004972 ORTHO05D006309 1.4e-90 336.7 225 72.4
PGSC0003DMG400030511 Solanum tuberosum HOM05D004972 ORTHO05D006309 1.4e-90 336.7 225 71.1
Sc04g0005680 Simmondsia chinensis HOM05D004972 ORTHO05D006309 2.4e-90 335.9 226 73.5
CiPaw.06G013900 Carya illinoinensis HOM05D004972 ORTHO05D006309 3.2e-90 335.5 227 73.1
Actinidia15243 Actinidia chinensis HOM05D004972 ORTHO05D006309 5.4e-90 334.7 225 71.1
Actinidia36689 Actinidia chinensis HOM05D004972 ORTHO05D006309 5.4e-90 334.7 225 71.1
Actinidia14945 Actinidia chinensis HOM05D004972 ORTHO05D006309 7.0e-90 334.3 225 71.6
BolC2t06543H Brassica oleracea HOM05D004972 ORTHO05D006309 9.2e-90 334.0 229 78.2
Migut.L00755 Erythranthe guttata HOM05D004972 ORTHO05D006309 9.2e-90 334.0 225 71.1
CsaV3_5G034860 Cucumis sativus L. HOM05D004972 ORTHO05D006309 2.0e-89 332.8 225 72.9
CAN.G1693.8 Capsicum annuum HOM05D004972 ORTHO05D006309 4.6e-89 331.6 225 71.1
Cpa.g.sc65.108 Carica papaya HOM05D004972 ORTHO05D006309 4.6e-89 331.6 197 80.2
Gohir.A12G057400 Gossypium hirsutum HOM05D004972 ORTHO05D006309 4.6e-89 331.6 225 73.3
CSS0013445 Camellia sinensis var. sinensis HOM05D004972 ORTHO05D006309 6.0e-89 331.3 226 72.6
CSS0024462 Camellia sinensis var. sinensis HOM05D004972 ORTHO05D006309 6.0e-89 331.3 226 72.6
Rhsim09G0068400 Rhododendron simsii HOM05D004972 ORTHO05D006309 6.0e-89 331.3 225 69.8
TWI79G0317 Tripterygium wilfordii HOM05D004972 ORTHO05D006309 6.0e-89 331.3 225 74.2
Sed0026570 Sechium edule HOM05D004972 ORTHO05D006309 7.8e-89 330.9 225 72.4
MSTRG.882 Avicennia marina HOM05D004972 ORTHO05D006309 1.3e-88 330.1 225 71.1
Gohir.A07G173000 Gossypium hirsutum HOM05D004972 ORTHO05D006309 2.3e-88 329.3 225 73.8
Hma1.2p1_0114F.1_g055290 Hydrangea macrophylla HOM05D004972 ORTHO05D006309 2.3e-88 329.3 225 71.1
SGA_v2.0_scaffold50G18531 Striga asiatica HOM05D004972 ORTHO05D006309 2.3e-88 329.3 225 71.1
Atru.chr11.981 Acer truncatum HOM05D004972 ORTHO05D006309 3.0e-88 328.9 225 71.1
QL01p002347 Quercus lobata HOM05D004972 ORTHO05D006309 3.0e-88 328.9 279 61.3
HanXRQChr08g0212881 Helianthus annuus HOM05D004972 ORTHO05D006309 5.0e-88 328.2 225 68.9
Lj6C749G10 Lonicera japonica HOM05D004972 ORTHO05D006309 5.0e-88 328.2 224 72.8
Prupe.1G321700 Prunus persica HOM05D004972 ORTHO05D006309 1.1e-87 327.0 225 71.6
Gorai.001G201700 Gossypium raimondii HOM05D004972 ORTHO05D006309 1.5e-87 326.6 225 73.3
Gohir.D07G180500 Gossypium hirsutum HOM05D004972 ORTHO05D006309 3.3e-87 325.5 225 72.9
AUR62014195 Chenopodium quinoa HOM05D004972 ORTHO05D006309 4.3e-87 325.1 225 69.3
Lsat_1_v5_gn_8_42761 Lactuca sativa HOM05D004972 ORTHO05D006309 7.3e-87 324.3 225 68.9
Oeu044327.1 Olea europaea HOM05D004972 ORTHO05D006309 9.5e-87 323.9 225 70.7
HanXRQChr07g0189871 Helianthus annuus HOM05D004972 ORTHO05D006309 2.1e-86 322.8 225 67.6
DCAR_030202 Daucus carota HOM05D004972 ORTHO05D006309 2.8e-86 322.4 226 69.0
Dinv05881 Davidia involucrata HOM05D004972 ORTHO05D006309 2.8e-86 322.4 224 69.6
TAR629G1532 Trochodendron aralioides HOM05D004972 ORTHO05D006309 2.8e-86 322.4 225 70.7
Lj5g0002039 Lotus japonicus HOM05D004972 ORTHO05D006309 3.6e-86 322.0 225 70.7
Cc11_g09090 Coffea canephora HOM05D004972 ORTHO05D006309 1.8e-85 319.7 225 71.6
Duzib133G0650 Durio zibethinus HOM05D004972 ORTHO05D006309 4.0e-85 318.5 197 78.7
EL10Ac6g14241 Beta vulgaris HOM05D004972 ORTHO05D006309 5.2e-85 318.2 225 68.9
Phvul.007G035700 Phaseolus vulgaris HOM05D004972 ORTHO05D006309 2.0e-84 316.2 225 70.2
ECA233G6099 Erigeron canadensis HOM05D004972 ORTHO05D006309 3.4e-84 315.5 225 67.6
MBI07_g18719_MAGBIO Magnolia biondii HOM05D004972 ORTHO05D006309 3.4e-84 315.5 228 68.0
VMungo0720G3073 Vigna mungo HOM05D004972 ORTHO05D006309 4.4e-84 315.1 225 69.3
Glyma.10G266000 Glycine max HOM05D004972 ORTHO05D006309 1.3e-83 313.5 225 69.3
SalBow8G2598 Salvia bowleyana HOM05D004972 ORTHO05D006309 1.7e-83 313.2 226 68.1
Hund24992 Selenicereus undatus HOM05D004972 ORTHO05D006309 2.4e-82 309.3 260 61.5
Lalb_Chr06g0165661 Lupinus albus HOM05D004972 ORTHO05D006309 4.1e-82 308.5 225 67.6
Glyma.20G124600 Glycine max HOM05D004972 ORTHO05D006309 1.2e-81 307.0 226 68.6
SGA_v2.0_scaffold38G15047 Striga asiatica HOM05D004972 ORTHO05D006309 2.1e-81 306.2 225 65.3
TPR.G4886 Trifolium pratense HOM05D004972 ORTHO05D006309 2.1e-81 306.2 225 67.1
Psat6g222200 Pisum sativum HOM05D004972 ORTHO05D006309 2.7e-81 305.8 225 66.7
Nitab4.5_0004092g0040 Nicotiana tabacum HOM05D004972 ORTHO05D006309 3.5e-81 305.4 266 59.0
vmacro01431 Vaccinium macrocarpon HOM05D004972 ORTHO05D006309 4.6e-81 305.1 208 70.7
Ca_11105_v3 Cicer arietinum L. HOM05D004972 ORTHO05D006309 1.7e-80 303.1 225 68.0
arahy.Tifrunner.gnm1.ann1.YXX0BK Arachis hypogaea HOM05D004972 ORTHO05D006309 2.5e-79 299.3 225 66.2
arahy.Tifrunner.gnm1.ann1.DS7XTJ Arachis hypogaea HOM05D004972 ORTHO05D006309 4.3e-79 298.5 225 66.2
Medtr1g108610 Medicago truncatula HOM05D004972 ORTHO05D006309 5.6e-79 298.1 232 65.5
Nn2g14330 Nelumbo nucifera HOM05D004972 ORTHO05D006309 7.3e-79 297.7 225 66.2
arahy.Tifrunner.gnm1.ann1.F2FLG1 Arachis hypogaea HOM05D004972 ORTHO05D006309 1.2e-78 297.0 225 66.2
PSO782G3547 Papaver somniferum HOM05D004972 ORTHO05D006309 8.1e-78 294.3 227 62.6
Ah.02g128040 Amaranthus hybridus HOM05D004972 ORTHO05D006309 1.4e-77 293.5 226 64.6
PSO063G1195 Papaver somniferum HOM05D004972 ORTHO05D006309 1.4e-77 293.5 227 62.6
unitig_0.g2334 Utricularia gibba HOM05D004972 ORTHO05D006309 1.2e-76 290.4 219 63.0
Aqoxy3G04360 Aquilegia oxysepala HOM05D004972 ORTHO05D006309 1.5e-76 290.0 225 63.1
Haze_11044 Corylus avellana HOM05D004972 ORTHO05D006309 1.3e-75 287.0 225 66.2
ClCG05G022260 Citrullus lanatus HOM05D004972 ORTHO05D006309 2.9e-75 285.8 225 65.8
PGR119G0027 Punica granatum HOM05D004972 ORTHO05D006309 4.9e-75 285.0 225 65.8
Nn6g34668 Nelumbo nucifera HOM05D004972 ORTHO05D006309 1.6e-73 280.0 225 63.1
Os04g0662900 Oryza sativa ssp. japonica HOM05D004972 ORTHO05D006309 1.3e-72 276.9 225 59.1
MELO3C012297.2 Cucumis melo HOM05D004972 ORTHO05D006309 8.6e-72 274.2 177 75.7
C02p06000 Brassica napus HOM05D004972 ORTHO05D006309 7.3e-71 271.2 170 81.8
HPP92_015449 Vanilla planifolia HOM05D004972 ORTHO05D006309 2.1e-70 269.6 227 58.1
CDE09G0103 Ceratophyllum demersum HOM05D004972 ORTHO05D006309 3.1e-69 265.8 227 58.6
Zm00001eb246210 Zea mays HOM05D004972 ORTHO05D006309 1.1e-66 257.3 207 60.4
arahy.Tifrunner.gnm1.ann1.UKIC3J Arachis hypogaea HOM05D004972 ORTHO05D006309 6.0e-65 251.5 243 55.1
Gorai.008G060200 Gossypium raimondii HOM05D004972 ORTHO05D006309 2.3e-64 249.6 225 60.9
Migut.L00658 Erythranthe guttata HOM05D004972 ORTHO05D006309 9.6e-63 244.2 225 58.2
ATR0315G127 Amborella trichopoda HOM05D004972 ORTHO05D006309 1.6e-62 243.4 226 56.6
AUR62041239 Chenopodium quinoa HOM05D004972 ORTHO05D006309 1.1e-61 240.7 174 66.7
Sabra10G0085700 Salix brachista HOM05D004972 ORTHO05D006309 1.5e-60 236.9 260 50.8
Sabra10G0087400 Salix brachista HOM05D004972 ORTHO05D006309 1.5e-60 236.9 260 50.8
BcaNung01872 Brassica carinata HOM05D004972 ORTHO05D006309 2.6e-60 236.1 130 89.2
Duzib138G1958 Durio zibethinus HOM05D004972 ORTHO05D006309 1.7e-59 233.4 250 54.0
SEGI_23519 Sequoiadendron giganteum HOM05D004972 ORTHO05D006309 8.4e-59 231.1 225 51.6
Pp3c11_22300 Physcomitrium patens HOM05D004972 ORTHO05D006309 1.3e-48 197.2 225 46.7
Mapoly0012s0169 Marchantia polymorpha HOM05D004972 ORTHO05D006309 2.5e-47 193.0 219 47.5
AagrBONN_evm.TU.Sc2ySwM_344.4231 Anthoceros agrestis HOM05D004972 ORTHO05D006309 5.8e-44 181.8 210 45.2
FAN17G1863 Fragaria x ananassa HOM05D004972 ORTHO05D006309 8.4e-43 177.9 122 66.4
MCO09G688 Micromonas commoda HOM05D004972 ORTHO05D006309 3.0e-40 169.5 231 42.4
PRCOL_00004209 Prasinoderma coloniale HOM05D004972 ORTHO05D006309 4.3e-39 165.6 226 42.0
Cre08.g364250 Chlamydomonas reinhardtii HOM05D004972 ORTHO05D006309 6.3e-38 161.8 205 42.4
SHI16322 Sapria himalayana HOM05D004972 ORTHO05D006309 3.5e-33 146.0 195 45.6
CSS0034104 Camellia sinensis var. sinensis HOM05D004972 ORTHO05D006309 8.2e-30 134.8 100 63.0
CSS0029214 Camellia sinensis var. sinensis HOM05D004972 ORTHO05D006309 1.1e-29 134.4 100 63.0
Pp3c7_4620 Physcomitrium patens HOM05D004972 ORTHO05D006309 1.0e-27 127.9 150 48.7
Hma1.2p1_1593F.1_g292560 Hydrangea macrophylla HOM05D004972 ORTHO05D006309 1.8e-21 107.1 72 65.3
Zm00001eb025950 Zea mays HOM05D004972 ORTHO05D006309 6.1e-17 92.0 78 56.4
Zm00001eb219440 Zea mays HOM05D009386 ORTHO05D011419 7.9e-17 91.7 68 58.8
Gorai.001G193400 Gossypium raimondii HOM05D004972 ORTHO05D029864 3.3e-15 86.3 105 45.7
CSS0010746 Camellia sinensis var. sinensis HOM05D004972 ORTHO05D006309 1.3e-14 84.3 51 72.5
CSS0040756 Camellia sinensis var. sinensis HOM05D004972 ORTHO05D006309 1.3e-14 84.3 51 72.5
Hma1.2p1_0813F.1_g222490 Hydrangea macrophylla HOM05D004972 ORTHO05D006309 1.3e-14 84.3 51 74.5
CSS0044245 Camellia sinensis var. sinensis HOM05D004972 ORTHO05D006309 2.8e-14 83.2 51 72.5
Gorai.010G145600 Gossypium raimondii HOM05D004972 ORTHO05D029864 2.8e-14 83.2 79 53.2
CDE02G3434 Ceratophyllum demersum HOM05D004972 ORTHO05D000215 3.1e-13 79.7 76 56.6
Gohir.D01G091150 Gossypium hirsutum HOM05D004972 ORTHO05D029864 1.6e-12 77.4 123 40.7
SEGI_16480 Sequoiadendron giganteum HOM05D004972 ORTHO05D006309 2.9e-11 73.2 51 70.6
CSS0013064 Camellia sinensis var. sinensis HOM05D004972 ORTHO05D006309 6.5e-11 72.0 51 70.6
Cfa026650 Carpinus fangiana HOM05D004972 ORTHO05D006309 1.5e-10 70.9 226 28.3
Gohir.D11G085800 Gossypium hirsutum HOM05D001136 ORTHO05D011526 4.7e-09 65.9 37 81.1
Gorai.001G223500 Gossypium raimondii HOM05D004972 ORTHO05D029864 8.8e-08 61.6 51 56.9
SHI16326 Sapria himalayana HOM05D004972 ORTHO05D006309 5.7e-07 58.9 56 58.9


User provided reference genes

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