Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
BcaC04g19119 Brassica carinata HOM05D005483 ORTHO05D006924 0.0e+00 2076.6 1097 100.0
BraA10t44547Z Brassica rapa HOM05D005483 ORTHO05D006924 0.0e+00 1905.6 1144 89.9
A10p24830 Brassica napus HOM05D005483 ORTHO05D006924 0.0e+00 1903.6 1144 89.9
BolC9t59209H Brassica oleracea HOM05D005483 ORTHO05D006924 0.0e+00 1899.0 1144 89.8
C09p63680 Brassica napus HOM05D005483 ORTHO05D006924 0.0e+00 1895.9 1144 89.5
Sp6g30630 Schrenkiella parvula HOM05D005483 ORTHO05D006924 0.0e+00 1860.5 1142 86.9
Thhalv10012499m.g Eutrema salsugineum HOM05D005483 ORTHO05D006924 0.0e+00 1845.5 1142 86.1
AL6G24010 Arabidopsis lyrata HOM05D005483 ORTHO05D006924 0.0e+00 1837.8 1142 85.7
AT5G13390 Arabidopsis thaliana HOM05D005483 ORTHO05D006924 0.0e+00 1828.9 1142 85.1
BcaNung01159 Brassica carinata HOM05D005483 ORTHO05D006924 0.0e+00 1823.9 1141 85.7
Carub.0006s1155 Capsella rubella HOM05D005483 ORTHO05D006924 0.0e+00 1822.0 1142 84.7
CARHR200040 Cardamine hirsuta HOM05D005483 ORTHO05D006924 0.0e+00 1771.5 1142 83.3
BolC2t06551H Brassica oleracea HOM05D005483 ORTHO05D006924 0.0e+00 1765.7 1141 83.1
Aa31LG3G14260 Aethionema arabicum HOM05D005483 ORTHO05D006924 0.0e+00 1761.5 1155 81.1
A02p01880 Brassica napus HOM05D005483 ORTHO05D006924 0.0e+00 1743.8 1142 82.2
BraA02t05161Z Brassica rapa HOM05D005483 ORTHO05D006924 0.0e+00 1743.8 1142 82.2
BcaNung01880 Brassica carinata HOM05D005483 ORTHO05D006924 0.0e+00 1729.9 1141 81.8
C02p06100 Brassica napus HOM05D005483 ORTHO05D006924 0.0e+00 1724.9 1141 81.6
THA.LOC104825454 Tarenaya hassleriana HOM05D005483 ORTHO05D006924 0.0e+00 1675.6 1145 77.8
Thecc.02G190700 Theobroma cacao HOM05D005483 ORTHO05D006924 0.0e+00 1491.1 1151 68.4
Manes.08G100200 Manihot esculenta HOM05D005483 ORTHO05D006924 0.0e+00 1482.6 1148 68.2
Gohir.A01G020200 Gossypium hirsutum HOM05D005483 ORTHO05D006924 0.0e+00 1476.1 1159 67.4
Gohir.D01G018800 Gossypium hirsutum HOM05D005483 ORTHO05D006924 0.0e+00 1475.7 1158 67.6
Gorai.002G021000 Gossypium raimondii HOM05D005483 ORTHO05D006924 0.0e+00 1475.3 1157 67.6
Duzib052G0599 Durio zibethinus HOM05D005483 ORTHO05D006924 0.0e+00 1473.8 1148 67.6
GSVIVG01001111001 Vitis vinifera HOM05D005483 ORTHO05D006924 0.0e+00 1473.4 1144 68.0
Duzib248G1306 Durio zibethinus HOM05D005483 ORTHO05D006924 0.0e+00 1472.2 1157 67.9
Cpa.g.sc38.68 Carica papaya HOM05D005483 ORTHO05D006924 0.0e+00 1466.4 1150 68.0
Ciclev10004203m.g Citrus clementina HOM05D005483 ORTHO05D006924 0.0e+00 1466.4 1149 66.8
TWI18G1022 Tripterygium wilfordii HOM05D005483 ORTHO05D006924 0.0e+00 1459.1 1153 67.1
PGR119G2201 Punica granatum HOM05D005483 ORTHO05D006924 0.0e+00 1457.6 1156 67.1
CSS0020507 Camellia sinensis var. sinensis HOM05D005483 ORTHO05D006924 0.0e+00 1449.9 1160 65.3
FvH4_4g22440 Fragaria vesca HOM05D005483 ORTHO05D006924 0.0e+00 1449.9 1150 66.3
CANSAT01G1825 Cannabis sativa HOM05D005483 ORTHO05D006924 0.0e+00 1449.5 1148 66.1
Dinv17529 Davidia involucrata HOM05D005483 ORTHO05D006924 0.0e+00 1448.7 1152 66.3
FAN12G1583 Fragaria x ananassa HOM05D005483 ORTHO05D006924 0.0e+00 1448.7 1150 66.3
FAN07G1779 Fragaria x ananassa HOM05D005483 ORTHO05D006924 0.0e+00 1447.6 1150 66.2
RcHm_v2.0_Chr4g0428701 Rosa chinensis HOM05D005483 ORTHO05D006924 0.0e+00 1446.4 1147 66.3
FAN17G2071 Fragaria x ananassa HOM05D005483 ORTHO05D006924 0.0e+00 1443.7 1150 65.7
Sabra03G0117300 Salix brachista HOM05D005483 ORTHO05D006924 0.0e+00 1443.3 1184 64.9
Potri.003G161400 Populus trichocarpa HOM05D005483 ORTHO05D006924 0.0e+00 1442.6 1146 66.8
QL03p048748 Quercus lobata HOM05D005483 ORTHO05D006924 0.0e+00 1437.2 1153 66.1
Potri.001G068900 Populus trichocarpa HOM05D005483 ORTHO05D006924 0.0e+00 1435.6 1146 66.5
Hma1.2p1_1494F.1_g286890 Hydrangea macrophylla HOM05D005483 ORTHO05D006924 0.0e+00 1432.9 1145 65.7
TWI36G1286 Tripterygium wilfordii HOM05D005483 ORTHO05D006924 0.0e+00 1432.9 1153 65.6
MD16G1142500 Malus domestica HOM05D005483 ORTHO05D006924 0.0e+00 1432.5 1145 66.3
Prupe.1G213300 Prunus persica HOM05D005483 ORTHO05D006924 0.0e+00 1431.8 1144 65.1
Cfa009459 Carpinus fangiana HOM05D005483 ORTHO05D006924 0.0e+00 1417.9 1143 66.5
Haze_12514 Corylus avellana HOM05D005483 ORTHO05D006924 0.0e+00 1417.5 1143 66.1
Actinidia30577 Actinidia chinensis HOM05D005483 ORTHO05D006924 0.0e+00 1416.4 1148 65.1
CsaV3_4G002140 Cucumis sativus L. HOM05D005483 ORTHO05D006924 0.0e+00 1414.1 1151 65.2
MELO3C017824.2 Cucumis melo HOM05D005483 ORTHO05D006924 0.0e+00 1412.5 1152 65.2
Peaxi162Scf00842g00430 Petunia axillaris HOM05D005483 ORTHO05D006924 0.0e+00 1408.7 1146 64.8
Sed0020947 Sechium edule HOM05D005483 ORTHO05D006924 0.0e+00 1402.9 1148 64.5
Cc11_g14910 Coffea canephora HOM05D005483 ORTHO05D006924 0.0e+00 1402.5 1155 64.2
TAR622G1101 Trochodendron aralioides HOM05D005483 ORTHO05D006924 0.0e+00 1400.2 1146 64.2
Sopen11g017110 Solanum pennellii HOM05D005483 ORTHO05D006924 0.0e+00 1398.3 1145 63.9
CiPaw.06G110300 Carya illinoinensis HOM05D005483 ORTHO05D006924 0.0e+00 1397.9 1151 65.1
MSTRG.445 Avicennia marina HOM05D005483 ORTHO05D006924 0.0e+00 1395.9 1151 62.8
Solyc11g033282.1 Solanum lycopersicum HOM05D005483 ORTHO05D006924 0.0e+00 1395.9 1145 63.8
Rhsim12G0016200 Rhododendron simsii HOM05D005483 ORTHO05D006924 0.0e+00 1393.3 1154 64.0
vmacro01010 Vaccinium macrocarpon HOM05D005483 ORTHO05D006924 0.0e+00 1384.8 1153 63.4
Sed0017746 Sechium edule HOM05D005483 ORTHO05D006924 0.0e+00 1382.5 1144 64.2
HanXRQChr17g0540341 Helianthus annuus HOM05D005483 ORTHO05D006924 0.0e+00 1374.8 1157 62.7
ClCG07G012020 Citrullus lanatus HOM05D005483 ORTHO05D006924 0.0e+00 1373.6 1123 65.1
Nn4g22102 Nelumbo nucifera HOM05D005483 ORTHO05D006924 0.0e+00 1373.2 1145 63.7
Migut.K01044 Erythranthe guttata HOM05D005483 ORTHO05D006924 0.0e+00 1367.8 1154 62.8
MSTRG.8060 Avicennia marina HOM05D005483 ORTHO05D006924 0.0e+00 1367.1 1153 62.6
ECA246G4063 Erigeron canadensis HOM05D005483 ORTHO05D006924 0.0e+00 1365.9 1142 62.8
SGA_v2.0_scaffold258G45771 Striga asiatica HOM05D005483 ORTHO05D006924 0.0e+00 1365.1 1151 62.7
SalBow2G2141 Salvia bowleyana HOM05D005483 ORTHO05D006924 0.0e+00 1359.4 1153 62.5
Lsat_1_v5_gn_3_32540 Lactuca sativa HOM05D005483 ORTHO05D006924 0.0e+00 1358.6 1145 62.8
MD13G1132200 Malus domestica HOM05D005483 ORTHO05D006924 0.0e+00 1358.2 1144 62.9
Nn3g16247 Nelumbo nucifera HOM05D005483 ORTHO05D006924 0.0e+00 1353.2 1142 63.6
PSO017G1761 Papaver somniferum HOM05D005483 ORTHO05D006924 0.0e+00 1350.9 1145 62.1
PSO478G1749 Papaver somniferum HOM05D005483 ORTHO05D006924 0.0e+00 1347.4 1145 62.1
Sc11g0000050 Simmondsia chinensis HOM05D005483 ORTHO05D006924 0.0e+00 1340.9 1155 61.4
AUR62028835 Chenopodium quinoa HOM05D005483 ORTHO05D006924 0.0e+00 1339.3 1150 62.4
COL.COLO4_08434 Corchorus olitorius HOM05D005483 ORTHO05D006924 0.0e+00 1338.2 1028 70.0
Phvul.008G003900 Phaseolus vulgaris HOM05D005483 ORTHO05D006924 0.0e+00 1337.4 1150 62.0
Glyma.08G363300 Glycine max HOM05D005483 ORTHO05D006924 0.0e+00 1337.0 1147 62.7
Glyma.18G298700 Glycine max HOM05D005483 ORTHO05D006924 0.0e+00 1329.7 1144 61.8
Lalb_Chr10g0091131 Lupinus albus HOM05D005483 ORTHO05D006924 0.0e+00 1328.5 1147 62.1
Sabra01G0048200 Salix brachista HOM05D005483 ORTHO05D006924 0.0e+00 1321.6 1046 65.5
arahy.Tifrunner.gnm1.ann1.H63XD7 Arachis hypogaea HOM05D005483 ORTHO05D006924 0.0e+00 1316.6 1164 60.7
arahy.Tifrunner.gnm1.ann1.N4LA1V Arachis hypogaea HOM05D005483 ORTHO05D006924 0.0e+00 1316.6 1164 60.7
HanXRQChr06g0175451 Helianthus annuus HOM05D005483 ORTHO05D006924 0.0e+00 1316.6 1148 60.5
Ah.03g135500 Amaranthus hybridus HOM05D005483 ORTHO05D006924 0.0e+00 1307.4 1123 62.2
Aqoxy5G03055 Aquilegia oxysepala HOM05D005483 ORTHO05D006924 0.0e+00 1305.8 1150 60.1
TPR.G9702 Trifolium pratense HOM05D005483 ORTHO05D006924 0.0e+00 1305.8 1094 62.2
Lj1g0002578 Lotus japonicus HOM05D005483 ORTHO05D006924 0.0e+00 1304.7 1149 61.4
EL10Ac2g02397 Beta vulgaris HOM05D005483 ORTHO05D006924 0.0e+00 1302.3 1147 60.3
Ca_04087_v3 Cicer arietinum L. HOM05D005483 ORTHO05D006924 0.0e+00 1286.6 1094 61.6
VMungo1383G1684 Vigna mungo HOM05D005483 ORTHO05D006924 0.0e+00 1271.5 1086 62.7
Psat3g206760 Pisum sativum HOM05D005483 ORTHO05D006924 0.0e+00 1257.7 1052 62.3
Eucgr.G01983 Eucalyptus grandis HOM05D005483 ORTHO05D006924 0.0e+00 1248.0 940 68.5
AUR62005722 Chenopodium quinoa HOM05D005483 ORTHO05D006924 0.0e+00 1224.5 1134 59.1
Lj6C839G6 Lonicera japonica HOM05D005483 ORTHO05D006924 0.0e+00 1220.3 944 66.0
Medtr7g006760 Medicago truncatula HOM05D005483 ORTHO05D006924 0.0e+00 1206.8 1145 56.8
HPP92_020112 Vanilla planifolia HOM05D005483 ORTHO05D006924 0.0e+00 1192.2 1078 57.9
MBI11_g02503_MAGBIO Magnolia biondii HOM05D005483 ORTHO05D006924 0.0e+00 1191.8 1047 60.5
SEGI_17725 Sequoiadendron giganteum HOM05D005483 ORTHO05D006924 0.0e+00 1157.1 1122 54.9
ATR0582G070 Amborella trichopoda HOM05D005483 ORTHO05D006924 0.0e+00 1151.7 1112 55.2
Medtr7g406760 Medicago truncatula HOM05D005483 ORTHO05D006924 0.0e+00 1120.5 909 63.3
TAR374G0614 Trochodendron aralioides HOM05D005483 ORTHO05D006924 0.0e+00 1092.8 902 62.9
Atru.chr12.1443 Acer truncatum HOM05D005483 ORTHO05D006924 0.0e+00 1080.5 838 68.5
Pp3c14_23090 Physcomitrium patens HOM05D005483 ORTHO05D006924 7.5e-286 987.6 1083 48.7
CSS0027672 Camellia sinensis var. sinensis HOM05D005483 ORTHO05D006924 9.1e-284 980.7 806 64.5
CDE05G0204 Ceratophyllum demersum HOM05D005483 ORTHO05D006924 2.1e-280 969.5 945 55.9
Mapoly0029s0137 Marchantia polymorpha HOM05D005483 ORTHO05D006924 2.0e-275 953.0 1100 47.6
AagrBONN_evm.TU.Sc2ySwM_228.3500 Anthoceros agrestis HOM05D005483 ORTHO05D006924 2.6e-270 936.0 1087 46.5
DCAR_026441 Daucus carota HOM05D005483 ORTHO05D006924 9.5e-257 891.0 674 66.2
SMO116G0229 Selaginella moellendorffii HOM05D005483 ORTHO05D006924 4.4e-254 882.1 1087 44.5
unitig_22.g6373 Utricularia gibba HOM05D005483 ORTHO05D006924 3.4e-246 855.9 760 59.3
Nitab4.5_0002569g0090 Nicotiana tabacum HOM05D005483 ORTHO05D006924 1.0e-205 721.5 620 63.4
CDE05G1761 Ceratophyllum demersum HOM05D005483 ORTHO05D006924 4.2e-204 716.1 935 46.8
CBR_g38877 Chara braunii HOM05D005483 ORTHO05D006924 6.3e-192 675.6 1113 38.1
Zm00001eb113290 Zea mays HOM05D005483 ORTHO05D006924 1.2e-187 661.4 643 54.3
RcHm_v2.0_Chr4g0402251 Rosa chinensis HOM05D005483 ORTHO05D006924 5.0e-141 506.5 381 67.7
Hma1.2p1_1494F.1_g286880 Hydrangea macrophylla HOM05D005483 ORTHO05D006924 3.5e-126 457.2 425 60.5
DCAR_026440 Daucus carota HOM05D005483 ORTHO05D006924 3.4e-121 440.7 433 56.8
Os11g0528200 Oryza sativa ssp. japonica HOM05D005483 ORTHO05D006924 1.4e-95 355.5 356 53.1
Cre01.g018050 Chlamydomonas reinhardtii HOM05D005483 ORTHO05D006924 1.9e-87 328.6 1226 27.3
unitig_22.g6372 Utricularia gibba HOM05D005483 ORTHO05D006924 1.1e-79 302.8 317 53.6
MCO16G196 Micromonas commoda HOM05D005483 ORTHO05D006924 6.3e-75 287.0 1151 27.2
SEGI_02355 Sequoiadendron giganteum HOM05D005483 ORTHO05D006924 1.6e-70 272.3 347 45.2
Actinidia22109 Actinidia chinensis HOM05D005483 ORTHO05D006924 4.4e-68 264.2 285 53.3
Oeu011729.2 Olea europaea HOM05D005483 ORTHO05D000122 1.8e-58 232.3 348 42.8
Actinidia22108 Actinidia chinensis HOM05D005483 ORTHO05D006924 2.0e-57 228.8 362 47.2
SGA_v2.0_scaffold98G29280 Striga asiatica HOM05D005483 ORTHO05D007482 1.4e-45 189.5 320 41.9
Pp3c1_41760 Physcomitrium patens HOM05D005483 ORTHO05D006924 1.7e-27 129.4 638 22.9
RcHm_v2.0_Chr6g0278911 Rosa chinensis HOM05D005483 ORTHO05D006924 8.3e-27 127.1 100 68.0
RcHm_v2.0_Chr5g0056851 Rosa chinensis HOM05D005483 ORTHO05D006924 5.4e-26 124.4 70 78.6
RcHm_v2.0_Chr7g0226991 Rosa chinensis HOM05D005483 ORTHO05D006924 1.6e-25 122.9 68 79.4
Lj6C839G5 Lonicera japonica HOM05D005483 ORTHO05D006924 5.2e-21 107.8 130 52.3
RcHm_v2.0_Chr2g0133761 Rosa chinensis HOM05D005483 ORTHO05D006924 5.2e-21 107.8 86 68.6
RcHm_v2.0_Chr2g0126951 Rosa chinensis HOM05D005483 ORTHO05D006924 3.7e-19 101.7 143 46.9
DCAR_029048 Daucus carota HOM05D005483 ORTHO05D006924 6.8e-13 80.9 109 51.4


User provided reference genes

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