Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
BcaC04g19078 Brassica carinata HOM05D030265 ORTHO05D040033 1.1e-37 159.5 81 100.0
BolC9t59165H Brassica oleracea HOM05D030265 ORTHO05D040033 4.9e-33 144.1 81 92.6
BolC3t17051H Brassica oleracea HOM05D002507 ORTHO05D040139 1.1e-19 99.8 73 72.6
BcaB01g03991 Brassica carinata HOM05D002507 ORTHO05D003045 9.2e-16 86.7 47 87.2
A03p18090 Brassica napus HOM05D002507 ORTHO05D003045 2.3e-14 82.0 51 82.4
BolC3t14494H Brassica oleracea HOM05D002507 ORTHO05D023295 1.2e-12 76.3 51 78.4
Sp4g14650 Schrenkiella parvula HOM05D002507 ORTHO05D003045 1.2e-12 76.3 51 76.5
BraA05t20245Z Brassica rapa HOM05D002507 ORTHO05D003045 2.1e-12 75.5 51 76.5
BcaB01g03990 Brassica carinata HOM05D002507 ORTHO05D003045 4.7e-12 74.3 51 76.5
BcaC01g05914 Brassica carinata HOM05D002507 ORTHO05D003045 4.7e-12 74.3 51 76.5
BcaC02g11339 Brassica carinata HOM05D002507 ORTHO05D003045 8.1e-12 73.6 51 74.5
BolC4t23287H Brassica oleracea HOM05D002507 ORTHO05D003045 8.1e-12 73.6 51 74.5
A05p13050 Brassica napus HOM05D002507 ORTHO05D003045 1.1e-11 73.2 51 74.5
BcaNung05689 Brassica carinata HOM05D002507 ORTHO05D003045 3.1e-11 71.6 51 72.5
CARHR126050 Cardamine hirsuta HOM05D002507 ORTHO05D003045 3.1e-11 71.6 51 74.5
BcaC05g25053 Brassica carinata HOM05D030265 ORTHO05D039393 6.8e-11 70.5 39 92.3
AL4G27630 Arabidopsis lyrata HOM05D002507 ORTHO05D003045 2.0e-10 68.9 51 72.5
AT2G32260 Arabidopsis thaliana HOM05D002507 ORTHO05D003045 3.4e-10 68.2 51 72.5
Thhalv10016914m.g Eutrema salsugineum HOM05D002507 ORTHO05D003045 4.4e-10 67.8 51 68.6
Carub.0004s1358 Capsella rubella HOM05D002507 ORTHO05D003045 5.8e-10 67.4 51 70.6
Aa31LG5G4270 Aethionema arabicum HOM05D002507 ORTHO05D003045 7.5e-10 67.0 48 70.8
MELO3C026379.2 Cucumis melo HOM05D002507 ORTHO05D003045 1.4e-08 62.8 54 57.4
Aa31LG1G19400 Aethionema arabicum HOM05D002507 ORTHO05D003045 4.1e-08 61.2 52 65.4
Oeu027264.3 Olea europaea HOM05D002507 ORTHO05D003045 2.7e-07 58.5 30 83.3
TWI32G0448 Tripterygium wilfordii HOM05D002507 ORTHO05D003045 3.5e-07 58.2 30 80.0
Hund04371 Selenicereus undatus HOM05D002507 ORTHO05D003045 4.6e-07 57.8 37 70.3
Dinv04336 Davidia involucrata HOM05D002507 ORTHO05D003045 7.8e-07 57.0 32 81.2
Atru.chr8.1004 Acer truncatum HOM05D002507 ORTHO05D003045 1.0e-06 56.6 25 88.0
BolC5t29735H Brassica oleracea HOM05D030265 ORTHO05D039393 1.0e-06 56.6 30 93.3
Sed0025820 Sechium edule HOM05D002507 ORTHO05D003045 1.3e-06 56.2 30 80.0
THA.LOC104826160 Tarenaya hassleriana HOM05D002507 ORTHO05D003045 1.3e-06 56.2 47 61.7
Mapoly0050s0111 Marchantia polymorpha HOM05D002507 ORTHO05D003045 1.7e-06 55.8 29 79.3
Phvul.008G290600 Phaseolus vulgaris HOM05D002507 ORTHO05D003045 1.7e-06 55.8 30 73.3
ClCG11G016830 Citrullus lanatus HOM05D002507 ORTHO05D003045 2.3e-06 55.5 46 60.9
CsaV3_4G032370 Cucumis sativus L. HOM05D002507 ORTHO05D003045 2.3e-06 55.5 27 85.2
Sed0016435 Sechium edule HOM05D002507 ORTHO05D003045 3.0e-06 55.1 37 70.3
THA.LOC104800975 Tarenaya hassleriana HOM05D002507 ORTHO05D003045 3.0e-06 55.1 47 55.3
Atru.chr5.2260 Acer truncatum HOM05D002507 ORTHO05D003045 3.9e-06 54.7 25 84.0
Atru.chr8.791 Acer truncatum HOM05D002507 ORTHO05D003045 3.9e-06 54.7 25 84.0
Cpa.g.sc8.282 Carica papaya HOM05D002507 ORTHO05D003045 3.9e-06 54.7 48 56.2
DCAR_001284 Daucus carota HOM05D002507 ORTHO05D003045 3.9e-06 54.7 29 86.2
Hma1.2p1_0088F.1_g045060 Hydrangea macrophylla HOM05D002507 ORTHO05D003045 3.9e-06 54.7 35 71.4
Lalb_Chr04g0247011 Lupinus albus HOM05D002507 ORTHO05D003045 3.9e-06 54.7 33 72.7
TAR369G0022 Trochodendron aralioides HOM05D002507 ORTHO05D003045 3.9e-06 54.7 27 85.2
Ah.02g120800 Amaranthus hybridus HOM05D002507 ORTHO05D003045 5.1e-06 54.3 22 100.0
Aqoxy1G01407 Aquilegia oxysepala HOM05D002507 ORTHO05D003045 5.1e-06 54.3 22 100.0
EL10Ac6g15344 Beta vulgaris HOM05D002507 ORTHO05D003045 5.1e-06 54.3 22 100.0
AUR62003536 Chenopodium quinoa HOM05D002507 ORTHO05D003045 5.1e-06 54.3 22 100.0
AUR62017850 Chenopodium quinoa HOM05D002507 ORTHO05D003045 5.1e-06 54.3 22 100.0
Cc03_g08220 Coffea canephora HOM05D002507 ORTHO05D003045 5.1e-06 54.3 22 100.0
DCAR_004341 Daucus carota HOM05D002507 ORTHO05D003045 5.1e-06 54.3 22 100.0
DCAR_013658 Daucus carota HOM05D002507 ORTHO05D003045 5.1e-06 54.3 22 100.0
ECA233G5405 Erigeron canadensis HOM05D002507 ORTHO05D003045 5.1e-06 54.3 22 100.0
ECA238G1163 Erigeron canadensis HOM05D002507 ORTHO05D003045 5.1e-06 54.3 22 100.0
HanXRQChr08g0226441 Helianthus annuus HOM05D002507 ORTHO05D003045 5.1e-06 54.3 22 100.0
HanXRQChr14g0440111 Helianthus annuus HOM05D002507 ORTHO05D003045 5.1e-06 54.3 22 100.0
HanXRQChr16g0503511 Helianthus annuus HOM05D002507 ORTHO05D003045 5.1e-06 54.3 22 100.0
Lsat_1_v5_gn_2_60861 Lactuca sativa HOM05D002507 ORTHO05D003045 5.1e-06 54.3 22 100.0
Lsat_1_v5_gn_6_15800 Lactuca sativa HOM05D002507 ORTHO05D003045 5.1e-06 54.3 22 100.0
VMungo0647G0820 Vigna mungo HOM05D002507 ORTHO05D003045 5.1e-06 54.3 30 76.7
Actinidia32070 Actinidia chinensis HOM05D002507 ORTHO05D023295 6.6e-06 53.9 27 81.5
BcaNung06624 Brassica carinata HOM05D002507 ORTHO05D003045 6.6e-06 53.9 47 57.4
BolC8t52708H Brassica oleracea HOM05D002507 ORTHO05D003045 6.6e-06 53.9 47 57.4
BraA09t42079Z Brassica rapa HOM05D002507 ORTHO05D003045 6.6e-06 53.9 30 73.3
Ciclev10016157m.g Citrus clementina HOM05D002507 ORTHO05D003045 6.6e-06 53.9 27 81.5
Haze_13649 Corylus avellana HOM05D002507 ORTHO05D003045 6.6e-06 53.9 39 61.5
SGA_v2.0_scaffold181G39739 Striga asiatica HOM05D002507 ORTHO05D003045 8.6e-06 53.5 29 72.4
TWI34G1462 Tripterygium wilfordii HOM05D002507 ORTHO05D003045 8.6e-06 53.5 30 73.3
TAR625G0320 Trochodendron aralioides HOM05D002507 ORTHO05D003045 8.6e-06 53.5 27 81.5
unitig_699.g19627 Utricularia gibba HOM05D002507 ORTHO05D003045 8.6e-06 53.5 34 70.6


User provided reference genes

Program Settings