Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
BcaC04g19010 Brassica carinata HOM05D007570 ORTHO05D009365 2.9e-198 696.4 928 100.0
BolC9t59076H Brassica oleracea HOM05D007570 ORTHO05D009365 2.7e-188 663.3 928 96.3
C09p62380 Brassica napus HOM05D007570 ORTHO05D009365 8.8e-187 658.3 928 96.4
BraA10t44455Z Brassica rapa HOM05D007570 ORTHO05D009365 1.5e-178 630.9 928 96.2
A10p23910 Brassica napus HOM05D007570 ORTHO05D009365 7.2e-173 612.1 928 95.5
BcaB08g36948 Brassica carinata HOM05D007570 ORTHO05D009365 8.8e-163 578.6 935 92.2
Sp6g29270 Schrenkiella parvula HOM05D007570 ORTHO05D009365 4.1e-152 543.1 940 91.2
AL6G25570 Arabidopsis lyrata HOM05D007570 ORTHO05D009365 3.0e-142 510.4 940 86.4
Thhalv10012597m.g Eutrema salsugineum HOM05D007570 ORTHO05D009365 8.0e-140 502.3 940 87.6
AT5G14770 Arabidopsis thaliana HOM05D007570 ORTHO05D009365 2.7e-135 487.3 940 86.4
Carub.0006s1294 Capsella rubella HOM05D007570 ORTHO05D009365 9.9e-130 468.8 940 85.0
CARHR198540 Cardamine hirsuta HOM05D007570 ORTHO05D009365 1.1e-75 289.3 289 68.9
Aa31LG11G14690 Aethionema arabicum HOM05D007570 ORTHO05D009365 8.6e-33 146.7 132 74.2
Aa31LG11G14680 Aethionema arabicum HOM05D007570 ORTHO05D009365 2.5e-24 118.6 112 58.9
Ciclev10030585m.g Citrus clementina HOM05D007570 ORTHO05D009365 4.0e-22 111.3 188 38.3
Ca_18529_v3 Cicer arietinum L. HOM05D001301 ORTHO05D009365 6.8e-22 110.5 171 41.5
Psat7g112960 Pisum sativum HOM05D007570 ORTHO05D009365 8.9e-22 110.2 137 45.3
Medtr8g064830 Medicago truncatula HOM05D007570 ORTHO05D009365 2.6e-21 108.6 137 46.0
Glyma.07G194900 Glycine max HOM05D007570 ORTHO05D009365 5.8e-21 107.5 170 42.4
CiPaw.05G211100 Carya illinoinensis HOM05D007570 ORTHO05D009365 1.3e-20 106.3 137 43.8
Lj4g0005287 Lotus japonicus HOM05D007570 ORTHO05D009365 1.3e-20 106.3 167 41.9
Medtr4g089005 Medicago truncatula HOM05D007570 ORTHO05D009365 2.2e-20 105.5 184 41.3
VMungo0251G2923 Vigna mungo HOM05D007570 ORTHO05D009365 2.9e-20 105.1 137 46.0
Atru.chr6.18 Acer truncatum HOM05D007570 ORTHO05D009365 3.7e-20 104.8 141 41.1
MD03G1142100 Malus domestica HOM05D007570 ORTHO05D009365 3.7e-20 104.8 163 41.1
Potri.019G043101 Populus trichocarpa HOM05D007570 ORTHO05D009365 1.1e-19 103.2 176 38.1
Thecc.05G226900 Theobroma cacao HOM05D007570 ORTHO05D009365 1.1e-19 103.2 199 39.2
Phvul.002G227100 Phaseolus vulgaris HOM05D007570 ORTHO05D009365 2.4e-19 102.1 162 42.0
Lalb_Chr16g0383631 Lupinus albus HOM05D007570 ORTHO05D009365 5.4e-19 100.9 176 38.6
TPR.G12015 Trifolium pratense HOM05D007570 ORTHO05D009365 5.4e-19 100.9 137 43.8
MD11G1161200 Malus domestica HOM05D007570 ORTHO05D009365 7.1e-19 100.5 137 43.1
arahy.Tifrunner.gnm1.ann1.3SI8EE Arachis hypogaea HOM05D000112 ORTHO05D009365 9.2e-19 100.1 162 40.1
arahy.Tifrunner.gnm1.ann1.K3ZWQ5 Arachis hypogaea HOM05D000112 ORTHO05D009365 9.2e-19 100.1 162 40.1
Nitab4.5_0002344g0040 Nicotiana tabacum HOM05D007570 ORTHO05D009365 1.2e-18 99.8 160 36.9
Sabra19G0053700 Salix brachista HOM05D007570 ORTHO05D009365 2.1e-18 99.0 176 36.9
Duzib106G0838 Durio zibethinus HOM05D007570 ORTHO05D009365 2.7e-18 98.6 199 38.2
Migut.O00416 Erythranthe guttata HOM05D007570 ORTHO05D009365 2.7e-18 98.6 180 38.3
Cc02_g33170 Coffea canephora HOM05D007570 ORTHO05D009365 3.5e-18 98.2 236 31.8
CSS0011257 Camellia sinensis var. sinensis HOM05D007570 ORTHO05D009365 4.6e-18 97.8 167 40.1
Peaxi162Scf00037g01028 Petunia axillaris HOM05D007570 ORTHO05D009365 4.6e-18 97.8 259 32.8
FvH4_7g02371 Fragaria vesca HOM05D007570 ORTHO05D009365 7.8e-18 97.1 170 37.6
CSS0020002 Camellia sinensis var. sinensis HOM05D007570 ORTHO05D009365 1.0e-17 96.7 167 38.9
FAN06G1073 Fragaria x ananassa HOM05D007570 ORTHO05D009365 1.0e-17 96.7 171 37.4
Lsat_1_v5_gn_5_103340 Lactuca sativa HOM05D007570 ORTHO05D009365 1.0e-17 96.7 283 28.6
Solyc01g099530.3 Solanum lycopersicum HOM05D001281 ORTHO05D001139 1.3e-17 96.3 137 40.9
CANSAT78G1681 Cannabis sativa HOM05D007570 ORTHO05D009365 2.3e-17 95.5 137 44.5
TWI34G1038 Tripterygium wilfordii HOM05D007570 ORTHO05D009365 2.3e-17 95.5 139 40.3
FAN01G3111 Fragaria x ananassa HOM05D007570 ORTHO05D009365 6.6e-17 94.0 171 37.4
MSTRG.27980 Avicennia marina HOM05D007570 ORTHO05D009365 8.6e-17 93.6 164 37.2
Gohir.A01G216000 Gossypium hirsutum HOM05D007570 ORTHO05D009365 1.5e-16 92.8 182 36.3
Migut.N02077 Erythranthe guttata HOM05D007570 ORTHO05D009365 1.9e-16 92.4 260 30.8
Gorai.002G249100 Gossypium raimondii HOM05D007570 ORTHO05D009365 1.9e-16 92.4 182 36.3
Nitab4.5_0008329g0060 Nicotiana tabacum HOM05D001281 ORTHO05D009365 4.3e-16 91.3 78 51.3
Dinv40321 Davidia involucrata HOM05D007570 ORTHO05D009365 5.6e-16 90.9 186 38.7
Gohir.D01G204800 Gossypium hirsutum HOM05D007570 ORTHO05D009365 9.5e-16 90.1 182 35.7
Manes.08G159400 Manihot esculenta HOM05D007570 ORTHO05D009365 1.2e-15 89.7 188 39.4
Lj5C421G19 Lonicera japonica HOM05D007570 ORTHO05D009365 8.1e-15 87.0 139 38.8
PSO210G6895 Papaver somniferum HOM05D007570 ORTHO05D009365 1.1e-14 86.7 138 35.5
PSO832G0129 Papaver somniferum HOM05D007570 ORTHO05D009365 1.4e-14 86.3 138 35.5
PGR031G1904 Punica granatum HOM05D007570 ORTHO05D009365 1.8e-14 85.9 136 33.8
MD11G1161100 Malus domestica HOM05D007570 ORTHO05D009365 1.2e-13 83.2 175 53.1
Rhsim07G0187500 Rhododendron simsii HOM05D001660 ORTHO05D003277 5.8e-13 80.9 274 29.6
Sc11g0002770 Simmondsia chinensis HOM05D007570 ORTHO05D009365 9.9e-13 80.1 242 29.8
Actinidia35565 Actinidia chinensis HOM05D007570 ORTHO05D009365 2.2e-12 79.0 106 43.4
Sopen01g043040 Solanum pennellii HOM05D007570 ORTHO05D009365 1.4e-11 76.3 137 35.8
PGSC0003DMG400024750 Solanum tuberosum HOM05D007570 ORTHO05D009365 2.4e-11 75.5 137 34.3
Hma1.2p1_1374F.1_g278810 Hydrangea macrophylla HOM05D007570 ORTHO05D009365 3.2e-11 75.1 107 43.0
Ah.10g033640 Amaranthus hybridus HOM05D007570 ORTHO05D009365 4.1e-11 74.7 270 25.9
Eucgr.F03126 Eucalyptus grandis HOM05D007570 ORTHO05D009365 7.1e-11 73.9 69 50.7
MD00G1202300 Malus domestica HOM05D007570 ORTHO05D009365 9.2e-11 73.6 385 63.4
CAN.G665.19 Capsicum annuum HOM05D007570 ORTHO05D009365 1.6e-10 72.8 62 53.2
Cpa.g.sc909.2 Carica papaya HOM05D007570 ORTHO05D009365 6.0e-10 70.9 71 47.9
Nn1g08626 Nelumbo nucifera HOM05D007570 ORTHO05D009365 7.8e-10 70.5 163 33.1
Eucgr.A02378 Eucalyptus grandis HOM05D007570 ORTHO05D009365 1.3e-09 69.7 66 50.0
Cfa016108 Carpinus fangiana HOM05D007570 ORTHO05D009365 3.9e-09 68.2 71 45.1
RcHm_v2.0_Chr1g0384651 Rosa chinensis HOM05D007570 ORTHO05D009365 5.1e-09 67.8 137 46.0
SalBow3G3428 Salvia bowleyana HOM05D007570 ORTHO05D009365 1.5e-08 66.2 99 40.4
Prupe.2G007100 Prunus persica HOM05D007570 ORTHO05D009365 3.3e-08 65.1 64 50.0
Hund19367 Selenicereus undatus HOM05D007570 ORTHO05D009365 9.6e-08 63.5 234 24.4
MELO3C024749.2 Cucumis melo HOM05D021906 ORTHO05D009365 8.1e-07 60.5 70 45.7
DCAR_001944 Daucus carota HOM05D007570 ORTHO05D009365 4.0e-06 58.2 103 33.0
Ah.05g177410 Amaranthus hybridus HOM05D000891 ORTHO05D000761 5.2e-06 57.8 135 29.6
C02p07310 Brassica napus HOM05D007570 ORTHO05D033112 6.8e-06 57.4 43 69.8
BolC2t06662H Brassica oleracea HOM05D007570 ORTHO05D033112 6.8e-06 57.4 43 69.8
BolC2t06664H Brassica oleracea HOM05D007570 ORTHO05D033112 6.8e-06 57.4 43 69.8
CsaV3_2G035920 Cucumis sativus L. HOM05D021906 ORTHO05D009365 6.8e-06 57.4 70 44.3
TAR625G0236 Trochodendron aralioides HOM05D007570 ORTHO05D009365 6.8e-06 57.4 137 43.8


User provided reference genes

Program Settings