Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
BcaC04g18926 Brassica carinata HOM05D005714 ORTHO05D006812 2.7e-101 372.1 197 100.0
BraA10t44382Z Brassica rapa HOM05D005714 ORTHO05D006812 9.9e-64 247.3 321 51.7
BcaB08g36870 Brassica carinata HOM05D005714 ORTHO05D006812 1.1e-62 243.8 312 52.2
Sp6g28230 Schrenkiella parvula HOM05D005714 ORTHO05D006812 3.2e-62 242.3 324 50.9
BolC9t58957H Brassica oleracea HOM05D005714 ORTHO05D006812 1.7e-60 236.5 320 51.2
BolC3t13356H Brassica oleracea HOM05D005714 ORTHO05D006812 1.9e-59 233.0 314 51.0
BcaB01g05015 Brassica carinata HOM05D005714 ORTHO05D006812 7.3e-59 231.1 324 49.4
BraA03t10072Z Brassica rapa HOM05D005714 ORTHO05D006812 7.3e-59 231.1 319 50.8
C03p08510 Brassica napus HOM05D005714 ORTHO05D006812 2.1e-58 229.6 314 50.6
Thhalv10015850m.g Eutrema salsugineum HOM05D005714 ORTHO05D006812 2.8e-58 229.2 324 49.4
C03p08640 Brassica napus HOM05D005714 ORTHO05D006812 4.8e-58 228.4 317 50.5
BolC3t13366H Brassica oleracea HOM05D005714 ORTHO05D006812 4.8e-58 228.4 317 50.5
BraA03t10075Z Brassica rapa HOM05D005714 ORTHO05D006812 1.1e-57 227.3 319 50.8
CARHR197420 Cardamine hirsuta HOM05D005714 ORTHO05D006812 3.1e-57 225.7 324 48.8
A03p07460 Brassica napus HOM05D005714 ORTHO05D006812 2.6e-56 222.6 319 50.2
Carub.0006s1407 Capsella rubella HOM05D005714 ORTHO05D006812 4.5e-56 221.9 324 47.5
AL6G26770 Arabidopsis lyrata HOM05D005714 ORTHO05D006812 7.1e-54 214.5 324 47.8
AL6G26782 Arabidopsis lyrata HOM05D005714 ORTHO05D006812 7.1e-54 214.5 324 47.8
AT5G15880 Arabidopsis thaliana HOM05D005714 ORTHO05D006812 4.6e-53 211.8 324 47.2
Aa31LG11G13710 Aethionema arabicum HOM05D005714 ORTHO05D006812 1.8e-52 209.9 324 46.0
C09p61150 Brassica napus HOM05D005714 ORTHO05D006812 4.2e-46 188.7 99 99.0
THA.LOC104802994 Tarenaya hassleriana HOM05D005714 ORTHO05D006812 3.9e-44 182.2 324 42.3
A10p17320 Brassica napus HOM05D000327 ORTHO05D006812 3.9e-36 155.6 205 50.7
Thecc.04G144400 Theobroma cacao HOM05D005714 ORTHO05D006812 9.4e-30 134.4 315 35.2
BcaB07g33635 Brassica carinata HOM05D005714 ORTHO05D006812 1.4e-28 130.6 88 76.1
COL.COLO4_03920 Corchorus olitorius HOM05D005714 ORTHO05D006812 3.0e-28 129.4 307 36.2
Gohir.D11G174600 Gossypium hirsutum HOM05D005714 ORTHO05D006812 3.0e-28 129.4 316 33.9
Gorai.007G187100 Gossypium raimondii HOM05D005714 ORTHO05D006812 5.1e-28 128.6 316 33.9
FAN09G3422 Fragaria x ananassa HOM05D005714 ORTHO05D006812 1.1e-25 120.9 308 35.4
Potri.017G110300 Populus trichocarpa HOM05D005714 ORTHO05D006812 1.5e-24 117.1 316 34.5
Dinv33913 Davidia involucrata HOM05D005714 ORTHO05D006812 2.6e-24 116.3 316 33.5
Lalb_Chr21g0317991 Lupinus albus HOM05D005714 ORTHO05D006812 5.9e-24 115.2 319 33.2
Cpa.g.sc179.47 Carica papaya HOM05D005714 ORTHO05D006812 1.0e-23 114.4 324 31.8
FvH4_6g45610 Fragaria vesca HOM05D005714 ORTHO05D006812 1.0e-23 114.4 330 33.6
Lj7A8G44 Lonicera japonica HOM05D005714 ORTHO05D006812 1.0e-23 114.4 325 34.5
ECA232G3066 Erigeron canadensis HOM05D005714 ORTHO05D006812 2.2e-23 113.2 311 35.4
Manes.02G065100 Manihot esculenta HOM05D005714 ORTHO05D006812 2.2e-23 113.2 314 34.1
Phvul.004G049100 Phaseolus vulgaris HOM05D005714 ORTHO05D006812 2.9e-23 112.8 310 33.9
CANSAT64G2721 Cannabis sativa HOM05D005714 ORTHO05D006812 5.0e-23 112.1 314 31.8
Cfa007975 Carpinus fangiana HOM05D005714 ORTHO05D006812 1.1e-22 110.9 251 35.9
Nn3g17645 Nelumbo nucifera HOM05D005714 ORTHO05D006812 1.4e-22 110.5 154 46.8
Sed0016830 Sechium edule HOM05D005714 ORTHO05D006812 2.5e-22 109.8 314 33.8
Glyma.19G041200 Glycine max HOM05D005714 ORTHO05D006812 4.2e-22 109.0 156 48.7
Potri.004G105400 Populus trichocarpa HOM05D005714 ORTHO05D006812 5.5e-22 108.6 330 32.7
Atru.BG.225.p Acer truncatum HOM05D005714 ORTHO05D006812 1.2e-21 107.5 322 32.9
Oeu032870.1 Olea europaea HOM05D005714 ORTHO05D006812 1.2e-21 107.5 325 32.0
Sabra17G0092200 Salix brachista HOM05D005714 ORTHO05D006812 1.6e-21 107.1 180 43.3
Duzib138G1804 Durio zibethinus HOM05D005714 ORTHO05D006812 3.6e-21 105.9 324 30.6
MSTRG.2945 Avicennia marina HOM05D005714 ORTHO05D006812 6.1e-21 105.1 312 31.7
Ca_20731_v3 Cicer arietinum L. HOM05D005714 ORTHO05D006812 6.1e-21 105.1 321 32.1
CSS0016024 Camellia sinensis var. sinensis HOM05D005714 ORTHO05D006812 7.9e-21 104.8 316 32.0
CSS0020756 Camellia sinensis var. sinensis HOM05D005714 ORTHO05D006812 7.9e-21 104.8 316 32.0
Sabra04G0076700 Salix brachista HOM05D005714 ORTHO05D006812 7.9e-21 104.8 155 46.5
CiPaw.03G006400 Carya illinoinensis HOM05D005714 ORTHO05D006812 1.0e-20 104.4 325 32.0
Medtr6g016870 Medicago truncatula HOM05D005714 ORTHO05D006812 1.4e-20 104.0 317 31.2
TWI74G1644 Tripterygium wilfordii HOM05D005714 ORTHO05D006812 1.4e-20 104.0 325 32.3
Cfa007977 Carpinus fangiana HOM05D001801 ORTHO05D001739 2.3e-20 103.2 325 32.0
Actinidia36301 Actinidia chinensis HOM05D005714 ORTHO05D006812 3.0e-20 102.8 314 31.5
CsaV3_3G020470 Cucumis sativus L. HOM05D005714 ORTHO05D006812 3.9e-20 102.4 314 32.2
Peaxi162Scf00479g00037 Petunia axillaris HOM05D005714 ORTHO05D006812 5.1e-20 102.1 322 31.4
Nitab4.5_0000612g0140 Nicotiana tabacum HOM05D005714 ORTHO05D006812 6.7e-20 101.7 321 32.4
Rhsim10G0064900 Rhododendron simsii HOM05D005714 ORTHO05D006812 6.7e-20 101.7 160 43.8
ClCG05G011990 Citrullus lanatus HOM05D005714 ORTHO05D006812 1.5e-19 100.5 154 44.2
MD09G1081200 Malus domestica HOM05D005714 ORTHO05D006812 1.5e-19 100.5 328 32.0
Prupe.3G242300 Prunus persica HOM05D005714 ORTHO05D006812 1.5e-19 100.5 325 32.6
MELO3C023776.2 Cucumis melo HOM05D005714 ORTHO05D006812 2.0e-19 100.1 331 29.9
MD17G1072600 Malus domestica HOM05D005714 ORTHO05D006812 4.4e-19 99.0 328 30.8
RcHm_v2.0_Chr2g0163761 Rosa chinensis HOM05D005714 ORTHO05D006812 1.3e-18 97.4 159 44.0
Sc10g0001430 Simmondsia chinensis HOM05D005714 ORTHO05D006812 6.3e-18 95.1 159 40.3
EL10Ac2g04627 Beta vulgaris HOM05D005714 ORTHO05D006812 8.2e-18 94.7 326 27.6
PGSC0003DMG400018763 Solanum tuberosum HOM05D005714 ORTHO05D006812 8.2e-18 94.7 322 30.1
SalBow1G2935 Salvia bowleyana HOM05D005714 ORTHO05D006812 1.1e-17 94.4 213 36.2
Actinidia18116 Actinidia chinensis HOM05D005714 ORTHO05D006812 1.8e-17 93.6 155 43.2
CSS0044543 Camellia sinensis var. sinensis HOM05D005714 ORTHO05D006812 1.8e-17 93.6 130 50.0
CSS0047938 Camellia sinensis var. sinensis HOM05D005714 ORTHO05D006812 1.8e-17 93.6 130 50.0
SalBow1G3421 Salvia bowleyana HOM05D005714 ORTHO05D006812 1.8e-17 93.6 213 36.2
Migut.H00540 Erythranthe guttata HOM05D005714 ORTHO05D006812 2.4e-17 93.2 192 38.0
SGA_v2.0_scaffold204G41660 Striga asiatica HOM05D005714 ORTHO05D006812 3.1e-17 92.8 120 50.8
Nitab4.5_0003161g0010 Nicotiana tabacum HOM05D005714 ORTHO05D006812 5.3e-17 92.0 313 30.7
GSVIVG01036468001 Vitis vinifera HOM05D005714 ORTHO05D006812 1.2e-16 90.9 163 42.3
Aqoxy3G03832 Aquilegia oxysepala HOM05D005714 ORTHO05D006812 2.0e-16 90.1 311 31.2
vmacro05584 Vaccinium macrocarpon HOM05D005714 ORTHO05D006812 2.6e-16 89.7 125 48.8
arahy.Tifrunner.gnm1.ann1.AEQW57 Arachis hypogaea HOM05D005714 ORTHO05D006812 5.9e-16 88.6 324 31.2
PGR042G2576 Punica granatum HOM05D005714 ORTHO05D006812 1.0e-15 87.8 328 30.5
HanXRQChr15g0490211 Helianthus annuus HOM05D005714 ORTHO05D006812 5.0e-15 85.5 310 30.6
Hund16108 Selenicereus undatus HOM05D005714 ORTHO05D006812 8.5e-15 84.7 128 44.5
BcaB01g04945 Brassica carinata HOM05D004183 ORTHO05D005022 1.9e-14 83.6 103 54.4
Eucgr.J01456 Eucalyptus grandis HOM05D005714 ORTHO05D006812 1.9e-14 83.6 179 39.1
Cc07_g04960 Coffea canephora HOM05D005714 ORTHO05D006812 4.2e-14 82.4 315 31.1
TPR.G9671 Trifolium pratense HOM05D005714 ORTHO05D006812 7.2e-14 81.6 316 29.7
Ah.10g037360 Amaranthus hybridus HOM05D005714 ORTHO05D006812 1.6e-13 80.5 315 26.0
Lj2g0024465 Lotus japonicus HOM05D005714 ORTHO05D006812 1.6e-13 80.5 302 27.8
PSO063G3590 Papaver somniferum HOM05D005714 ORTHO05D006812 2.1e-13 80.1 313 30.4
arahy.Tifrunner.gnm1.ann1.R8VTVZ Arachis hypogaea HOM05D005714 ORTHO05D006812 2.7e-13 79.7 346 28.9
BolC3t18733H Brassica oleracea HOM05D005714 ORTHO05D006812 1.8e-12 77.0 44 84.1
MBI15_g36941_MAGBIO Magnolia biondii HOM05D005714 ORTHO05D006812 5.2e-12 75.5 194 36.1
QL02p053457 Quercus lobata HOM05D005714 ORTHO05D006812 1.1e-11 74.3 76 56.6
unitig_899.g15126 Utricularia gibba HOM05D005714 ORTHO05D006812 1.5e-11 73.9 286 29.7
CAN.G551.30 Capsicum annuum HOM05D005714 ORTHO05D006812 2.0e-11 73.6 321 28.3
VMungo0464G1377 Vigna mungo HOM05D005714 ORTHO05D006812 2.6e-11 73.2 128 39.1
CDE02G2817 Ceratophyllum demersum HOM05D005714 ORTHO05D006812 7.4e-11 71.6 162 35.8
Os09g0108400 Oryza sativa ssp. japonica HOM05D005714 ORTHO05D006812 9.7e-11 71.2 152 36.2
AUR62014554 Chenopodium quinoa HOM05D005714 ORTHO05D006812 1.3e-10 70.9 203 31.5
AUR62008947 Chenopodium quinoa HOM05D005714 ORTHO05D006812 1.7e-10 70.5 193 31.6
RcHm_v2.0_Chr2g0163621 Rosa chinensis HOM05D005714 ORTHO05D006812 2.2e-10 70.1 88 54.5
HPP92_027404 Vanilla planifolia HOM05D005714 ORTHO05D006812 9.1e-09 64.7 167 34.1
Gohir.A11G168300 Gossypium hirsutum HOM05D005714 ORTHO05D006812 1.2e-08 64.3 144 34.0
Lsat_1_v5_gn_4_175801 Lactuca sativa HOM05D005714 ORTHO05D006812 1.2e-08 64.3 252 29.8
BcaB08g36868 Brassica carinata HOM05D005714 ORTHO05D006812 3.5e-08 62.8 53 69.8
Ciclev10012317m.g Citrus clementina HOM05D005714 ORTHO05D006812 3.5e-08 62.8 268 28.4
RcHm_v2.0_Chr2g0163721 Rosa chinensis HOM05D005714 ORTHO05D006812 3.5e-08 62.8 68 54.4
PSO782G2399 Papaver somniferum HOM05D005714 ORTHO05D006812 2.9e-07 59.7 300 27.7
C09p61160 Brassica napus HOM05D005714 ORTHO05D006812 7.2e-06 55.1 99 40.4


User provided reference genes

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