Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
BcaC04g18898 Brassica carinata HOM05D003588 ORTHO05D004252 5.4e-229 797.3 417 100.0
Thhalv10012470m.g Eutrema salsugineum HOM05D003588 ORTHO05D004252 5.2e-155 551.6 380 80.0
Sp6g27950 Schrenkiella parvula HOM05D003588 ORTHO05D004252 3.4e-154 548.9 380 80.5
A02p03430 Brassica napus HOM05D003588 ORTHO05D004252 1.1e-152 543.9 381 79.8
BraA02t05314Z Brassica rapa HOM05D003588 ORTHO05D004252 1.1e-152 543.9 381 79.8
BcaC03g18474 Brassica carinata HOM05D003588 ORTHO05D004252 1.8e-152 543.1 381 79.8
C02p08190 Brassica napus HOM05D003588 ORTHO05D004252 4.1e-152 542.0 381 79.8
BolC2t06743H Brassica oleracea HOM05D003588 ORTHO05D004252 5.4e-152 541.6 381 79.5
AL6G27090 Arabidopsis lyrata HOM05D003588 ORTHO05D004252 1.2e-151 540.4 380 79.5
CARHR197100 Cardamine hirsuta HOM05D003588 ORTHO05D004252 2.7e-151 539.3 380 80.0
Carub.0006s1440 Capsella rubella HOM05D003588 ORTHO05D004252 9.5e-149 530.8 375 79.2
AT5G16210 Arabidopsis thaliana HOM05D003588 ORTHO05D004252 4.0e-147 525.4 380 78.2
BcaNung02226 Brassica carinata HOM05D003588 ORTHO05D004252 1.3e-142 510.4 368 77.4
C09p60810 Brassica napus HOM05D003588 ORTHO05D004252 8.6e-142 507.7 427 70.5
BolC9t58921H Brassica oleracea HOM05D003588 ORTHO05D004252 8.6e-142 507.7 427 70.5
BcaC03g18481 Brassica carinata HOM05D003588 ORTHO05D004252 2.1e-140 503.1 380 75.3
Aa31LG11G13400 Aethionema arabicum HOM05D003588 ORTHO05D004252 1.2e-138 497.3 377 73.5
THA.LOC104820941 Tarenaya hassleriana HOM05D003588 ORTHO05D004252 2.1e-124 449.9 371 69.8
Potri.004G095900 Populus trichocarpa HOM05D003588 ORTHO05D004252 1.2e-119 434.1 377 65.8
Phvul.008G008300 Phaseolus vulgaris HOM05D003588 ORTHO05D004252 6.0e-119 431.8 373 64.9
Thecc.04G128900 Theobroma cacao HOM05D003588 ORTHO05D004252 1.5e-117 427.2 376 64.9
TWI53G1720 Tripterygium wilfordii HOM05D003588 ORTHO05D004252 7.3e-117 424.9 378 64.0
CiPaw.04G044200 Carya illinoinensis HOM05D003588 ORTHO05D004252 6.2e-116 421.8 373 63.5
Glyma.02G089000 Glycine max HOM05D003588 ORTHO05D004252 1.4e-115 420.6 375 65.3
Eucgr.F02790 Eucalyptus grandis HOM05D003588 ORTHO05D004252 2.4e-115 419.9 375 64.5
PGR004G1031 Punica granatum HOM05D003588 ORTHO05D004252 4.0e-115 419.1 379 62.5
Duzib133G0570 Durio zibethinus HOM05D003588 ORTHO05D004252 6.9e-115 418.3 376 64.4
Duzib138G1780 Durio zibethinus HOM05D003588 ORTHO05D004252 6.9e-115 418.3 376 64.4
Ciclev10010937m.g Citrus clementina HOM05D003588 ORTHO05D004252 9.9e-114 414.5 377 64.5
CANSAT78G2002 Cannabis sativa HOM05D003588 ORTHO05D004252 1.7e-113 413.7 375 62.1
Gohir.A07G174400 Gossypium hirsutum HOM05D003588 ORTHO05D004252 2.2e-113 413.3 377 64.7
Nn4g23954 Nelumbo nucifera HOM05D003588 ORTHO05D004252 4.9e-113 412.1 374 61.2
Atru.chr1.1617 Acer truncatum HOM05D003588 ORTHO05D004252 1.1e-112 411.0 370 63.8
CSS0016689 Camellia sinensis var. sinensis HOM05D003588 ORTHO05D004252 1.4e-112 410.6 368 63.3
CSS0025104 Camellia sinensis var. sinensis HOM05D003588 ORTHO05D004252 1.4e-112 410.6 368 63.3
TAR622G0110 Trochodendron aralioides HOM05D003588 ORTHO05D004252 2.4e-112 409.8 372 61.8
Prupe.3G148000 Prunus persica HOM05D003588 ORTHO05D004252 5.4e-112 408.7 373 64.1
Gohir.D07G181700 Gossypium hirsutum HOM05D003588 ORTHO05D004252 7.1e-112 408.3 377 64.2
Manes.02G071350 Manihot esculenta HOM05D003588 ORTHO05D004252 2.7e-111 406.4 375 62.1
Gorai.001G202700 Gossypium raimondii HOM05D003588 ORTHO05D004252 3.5e-111 406.0 377 63.9
PSO478G1111 Papaver somniferum HOM05D003588 ORTHO05D004252 1.3e-110 404.1 377 61.3
Lj1g0020363 Lotus japonicus HOM05D003588 ORTHO05D004252 2.3e-110 403.3 374 61.8
Manes.01G112900 Manihot esculenta HOM05D003588 ORTHO05D004252 2.3e-110 403.3 375 61.1
CsaV3_2G033840 Cucumis sativus L. HOM05D003588 ORTHO05D004252 8.7e-110 401.4 376 61.2
FvH4_7g07990 Fragaria vesca HOM05D003588 ORTHO05D004252 1.1e-109 401.0 379 62.8
Rhsim10G0072600 Rhododendron simsii HOM05D003588 ORTHO05D004252 1.1e-109 401.0 386 58.3
Sed0005237 Sechium edule HOM05D003588 ORTHO05D004252 1.9e-109 400.2 374 60.4
Cpa.g.sc170.32 Carica papaya HOM05D003588 ORTHO05D004252 2.5e-109 399.8 377 61.8
PSO017G4387 Papaver somniferum HOM05D003588 ORTHO05D004252 4.3e-109 399.1 377 60.5
TPR.G16544 Trifolium pratense HOM05D003588 ORTHO05D004252 9.6e-109 397.9 377 60.7
Medtr7g082650 Medicago truncatula HOM05D003588 ORTHO05D004252 2.8e-108 396.4 376 60.4
QL04p012047 Quercus lobata HOM05D003588 ORTHO05D004252 1.1e-107 394.4 377 61.8
Sopen02g031000 Solanum pennellii HOM05D003588 ORTHO05D004252 1.8e-107 393.7 389 58.6
Oeu050384.1 Olea europaea HOM05D003588 ORTHO05D004252 2.4e-107 393.3 381 59.3
FAN10G2177 Fragaria x ananassa HOM05D003588 ORTHO05D004252 2.6e-106 389.8 379 61.7
Dinv33964 Davidia involucrata HOM05D003588 ORTHO05D004252 4.5e-106 389.0 394 57.9
VMungo1383G2782 Vigna mungo HOM05D003588 ORTHO05D004252 5.8e-106 388.7 373 60.3
Cc07_g08540 Coffea canephora HOM05D003588 ORTHO05D004252 1.3e-105 387.5 391 57.5
Haze_14184 Corylus avellana HOM05D003588 ORTHO05D004252 2.2e-105 386.7 405 57.0
MD17G1249900 Malus domestica HOM05D003588 ORTHO05D004252 3.8e-105 386.0 375 61.3
FAN03G2066 Fragaria x ananassa HOM05D003588 ORTHO05D004252 2.4e-104 383.3 403 58.3
CSS0045616 Camellia sinensis var. sinensis HOM05D003588 ORTHO05D004252 3.2e-104 382.9 387 57.6
Gohir.D11G172000 Gossypium hirsutum HOM05D003588 ORTHO05D004252 4.2e-104 382.5 379 58.6
Gorai.007G184400 Gossypium raimondii HOM05D003588 ORTHO05D004252 9.3e-104 381.3 379 58.3
vmacro22953 Vaccinium macrocarpon HOM05D003588 ORTHO05D004252 9.3e-104 381.3 376 58.8
Gohir.A11G165800 Gossypium hirsutum HOM05D003588 ORTHO05D004252 1.2e-103 380.9 379 58.3
Ca_04138_v3 Cicer arietinum L. HOM05D003588 ORTHO05D004252 1.6e-103 380.6 379 58.0
Lalb_Chr10g0091441 Lupinus albus HOM05D003588 ORTHO05D004252 7.9e-103 378.3 401 55.4
Nitab4.5_0000753g0220 Nicotiana tabacum HOM05D003588 ORTHO05D004252 1.0e-102 377.9 375 59.5
Sabra04G0065000 Salix brachista HOM05D003588 ORTHO05D004252 1.3e-102 377.5 377 59.9
DCAR_025903 Daucus carota HOM05D003588 ORTHO05D004252 3.0e-102 376.3 394 55.3
Hund16184 Selenicereus undatus HOM05D003588 ORTHO05D004252 3.9e-102 375.9 374 58.6
FAN06G2375 Fragaria x ananassa HOM05D003588 ORTHO05D004252 5.1e-102 375.6 413 56.4
ECA232G2944 Erigeron canadensis HOM05D003588 ORTHO05D004252 6.7e-102 375.2 381 56.7
Ca_08090_v3 Cicer arietinum L. HOM05D003588 ORTHO05D004252 8.7e-102 374.8 369 59.3
AUR62023267 Chenopodium quinoa HOM05D003588 ORTHO05D004252 1.1e-101 374.4 376 58.2
Nitab4.5_0008521g0020 Nicotiana tabacum HOM05D003588 ORTHO05D004252 5.6e-101 372.1 375 58.9
MD09G1255900 Malus domestica HOM05D003588 ORTHO05D004252 2.1e-100 370.2 375 58.9
EL10Ac2g04530 Beta vulgaris HOM05D003588 ORTHO05D004252 3.7e-100 369.4 374 58.0
COL.COLO4_09374 Corchorus olitorius HOM05D003588 ORTHO05D004252 6.2e-100 368.6 375 59.7
Lj4C184G4 Lonicera japonica HOM05D003588 ORTHO05D004252 1.4e-99 367.5 379 57.3
Ah.10g037630 Amaranthus hybridus HOM05D003588 ORTHO05D004252 2.4e-99 366.7 374 58.6
ClCG11G007740 Citrullus lanatus HOM05D003588 ORTHO05D004252 4.0e-99 365.9 375 58.4
Glyma.05G002100 Glycine max HOM05D003588 ORTHO05D004252 9.0e-99 364.8 379 57.5
Psat3g097680 Pisum sativum HOM05D003588 ORTHO05D004252 9.0e-99 364.8 370 58.4
Os01g0514300 Oryza sativa ssp. japonica HOM05D003588 ORTHO05D004252 4.5e-98 362.5 373 54.2
TPR.G25232 Trifolium pratense HOM05D003588 ORTHO05D004252 2.9e-97 359.8 377 57.3
arahy.Tifrunner.gnm1.ann1.JMF5N7 Arachis hypogaea HOM05D003588 ORTHO05D004252 6.5e-97 358.6 379 55.9
arahy.Tifrunner.gnm1.ann1.QJYU1D Arachis hypogaea HOM05D003588 ORTHO05D004252 6.5e-97 358.6 379 55.9
vmacro05528 Vaccinium macrocarpon HOM05D003588 ORTHO05D004252 3.5e-95 352.8 376 55.6
Medtr6g004240 Medicago truncatula HOM05D003588 ORTHO05D004252 3.0e-94 349.7 374 55.9
MD17G1249700 Malus domestica HOM05D003588 ORTHO05D004252 8.7e-94 348.2 363 58.4
Phvul.004G002300 Phaseolus vulgaris HOM05D003588 ORTHO05D004252 4.8e-92 342.4 392 53.1
FAN01G1119 Fragaria x ananassa HOM05D003588 ORTHO05D004252 1.5e-90 337.4 358 58.9
Lj2g0002647 Lotus japonicus HOM05D003588 ORTHO05D004252 1.5e-90 337.4 376 54.5
Zm00001eb341840 Zea mays HOM05D003588 ORTHO05D004252 5.0e-89 332.4 352 54.3
unitig_899.g14514 Utricularia gibba HOM05D003588 ORTHO05D004252 1.9e-88 330.5 364 51.6
SGA_v2.0_scaffold49G18119 Striga asiatica HOM05D003588 ORTHO05D004252 2.5e-88 330.1 308 60.4
VMungo0464G0444 Vigna mungo HOM05D003588 ORTHO05D004252 2.0e-82 310.5 377 50.7
Mapoly0103s0005 Marchantia polymorpha HOM05D003588 ORTHO05D004252 2.2e-76 290.4 372 48.4
A10p22850 Brassica napus HOM05D003588 ORTHO05D004252 1.1e-75 288.1 379 51.2
BraA10t44352Z Brassica rapa HOM05D003588 ORTHO05D004252 1.1e-75 288.1 379 51.2
arahy.Tifrunner.gnm1.ann1.K3Z2GB Arachis hypogaea HOM05D003588 ORTHO05D004252 3.1e-75 286.6 382 49.0
arahy.Tifrunner.gnm1.ann1.CE0ZIG Arachis hypogaea HOM05D003588 ORTHO05D004252 9.1e-75 285.0 382 49.0
Actinidia15898 Actinidia chinensis HOM05D003588 ORTHO05D004252 4.5e-74 282.7 337 51.3
Migut.H00238 Erythranthe guttata HOM05D003588 ORTHO05D004252 1.9e-72 277.3 260 59.6
Lalb_Chr06g0176731 Lupinus albus HOM05D003588 ORTHO05D004252 7.9e-71 271.9 405 46.4
Pp3c18_21770 Physcomitrium patens HOM05D003588 ORTHO05D004252 1.1e-69 268.1 363 46.6
CDE09G0638 Ceratophyllum demersum HOM05D003588 ORTHO05D004252 4.4e-61 239.6 203 60.6
arahy.Tifrunner.gnm1.ann1.SZ4JBM Arachis hypogaea HOM05D003588 ORTHO05D009236 1.7e-60 237.7 378 45.0
CAN.G625.55 Capsicum annuum HOM05D003588 ORTHO05D000105 2.0e-58 230.7 522 35.8
SMO356G0339 Selaginella moellendorffii HOM05D003588 ORTHO05D004252 3.5e-58 229.9 364 41.8
GSVIVG01030979001 Vitis vinifera HOM05D003588 ORTHO05D004252 5.0e-57 226.1 207 61.8
QL02p050339 Quercus lobata HOM05D003588 ORTHO05D004252 3.2e-56 223.4 208 62.5
RcHm_v2.0_Chr3g0494121 Rosa chinensis HOM05D003588 ORTHO05D004252 1.2e-55 221.5 210 61.4
Solyc02g086330.4 Solanum lycopersicum HOM05D003588 ORTHO05D004252 1.8e-54 217.6 224 57.6
MELO3C008156.2 Cucumis melo HOM05D003588 ORTHO05D004252 5.7e-53 212.6 210 59.0
AUR62009039 Chenopodium quinoa HOM05D003588 ORTHO05D004252 1.7e-52 211.1 208 57.7
Aqoxy3G00199 Aquilegia oxysepala HOM05D003588 ORTHO05D004252 2.2e-52 210.7 227 56.4
MBI16_g38076_MAGBIO Magnolia biondii HOM05D003588 ORTHO05D004252 2.8e-52 210.3 217 54.8
MSTRG.2779 Avicennia marina HOM05D003588 ORTHO05D004252 1.1e-51 208.4 210 57.1
HanXRQChr09g0262691 Helianthus annuus HOM05D003588 ORTHO05D004252 1.1e-51 208.4 208 57.2
Lsat_1_v5_gn_4_155600 Lactuca sativa HOM05D003588 ORTHO05D004252 9.1e-51 205.3 208 57.2
TPR.G25236 Trifolium pratense HOM05D003588 ORTHO05D004252 1.3e-49 201.4 208 57.2
Pp3c18_21850 Physcomitrium patens HOM05D003588 ORTHO05D004252 3.8e-49 199.9 247 48.2
CBR_g34722 Chara braunii HOM05D003588 ORTHO05D004252 1.1e-48 198.4 320 39.1
GSVIVG01030980001 Vitis vinifera HOM05D003588 ORTHO05D004252 1.1e-48 198.4 155 70.3
ATR0681G033 Amborella trichopoda HOM05D003588 ORTHO05D004252 1.9e-48 197.6 209 54.1
Pp3c3_38010 Physcomitrium patens HOM05D003588 ORTHO05D004252 7.2e-48 195.7 360 38.6
MBI16_g38075_MAGBIO Magnolia biondii HOM05D003588 ORTHO05D004252 2.1e-47 194.1 170 60.6
MSTRG.2778 Avicennia marina HOM05D003588 ORTHO05D004252 4.7e-47 193.0 163 63.8
Cfa007893 Carpinus fangiana HOM05D003588 ORTHO05D004252 8.0e-47 192.2 151 67.5
QL02p050347 Quercus lobata HOM05D003588 ORTHO05D004252 1.8e-46 191.0 154 66.9
Psat1g052560 Pisum sativum HOM05D003588 ORTHO05D004252 3.0e-46 190.3 209 54.5
Dinv34794 Davidia involucrata HOM05D003588 ORTHO05D004252 8.9e-46 188.7 183 60.7
ATR0681G242 Amborella trichopoda HOM05D003588 ORTHO05D004252 4.9e-44 183.0 168 59.5
RcHm_v2.0_Chr3g0494131 Rosa chinensis HOM05D003588 ORTHO05D004252 7.0e-43 179.1 155 65.2
Aqoxy3G00200 Aquilegia oxysepala HOM05D003588 ORTHO05D004252 4.5e-42 176.4 153 64.7
BcaC03g18478 Brassica carinata HOM05D003588 ORTHO05D004252 5.0e-41 172.9 100 88.0
Lsat_1_v5_gn_4_155620 Lactuca sativa HOM05D003588 ORTHO05D004252 3.3e-40 170.2 154 58.4
HanXRQChr09g0262701 Helianthus annuus HOM05D003588 ORTHO05D004252 1.6e-39 167.9 149 58.4
AUR62009038 Chenopodium quinoa HOM05D003588 ORTHO05D004252 1.4e-38 164.9 133 66.9
Sc10g0001060 Simmondsia chinensis HOM05D003588 ORTHO05D004252 7.5e-37 159.1 159 56.0
AagrBONN_evm.TU.Sc2ySwM_344.2595 Anthoceros agrestis HOM05D003588 ORTHO05D004252 8.3e-36 155.6 232 43.5
Psat1g004680 Pisum sativum HOM05D003588 ORTHO05D004252 1.1e-35 155.2 168 55.4
Peaxi162Scf00877g00020 Petunia axillaris HOM05D003588 ORTHO05D004252 1.0e-33 148.7 159 54.7
Hma1.2p1_0391F.1_g142780 Hydrangea macrophylla HOM05D003588 ORTHO05D004252 8.0e-31 139.0 92 77.2
BcaB05g22772 Brassica carinata HOM05D003588 ORTHO05D004252 1.9e-27 127.9 150 52.7
Dinv34795 Davidia involucrata HOM05D003588 ORTHO05D004252 3.2e-27 127.1 80 77.5
SEGI_01406 Sequoiadendron giganteum HOM05D003588 ORTHO05D004252 3.2e-27 127.1 138 52.2
CDE02G3249 Ceratophyllum demersum HOM05D003588 ORTHO05D004252 1.7e-25 121.3 123 52.8
CAN.G1113.1 Capsicum annuum HOM05D003588 ORTHO05D004252 1.5e-21 108.2 75 76.0
CDE02G1293 Ceratophyllum demersum HOM05D003588 ORTHO05D004252 2.9e-20 104.0 104 52.9
Solyc02g086320.1 Solanum lycopersicum HOM05D003588 ORTHO05D004252 1.1e-19 102.1 97 58.8
arahy.Tifrunner.gnm1.ann1.3AG3I6 Arachis hypogaea HOM05D003588 ORTHO05D004252 5.2e-14 83.2 72 63.9
Lsat_1_v5_gn_5_147680 Lactuca sativa HOM05D003588 ORTHO05D004252 2.6e-13 80.9 92 53.3
Glyma.19G002000 Glycine max HOM05D003588 ORTHO05D004252 1.3e-12 78.6 105 46.7
Thhalv10014979m.g Eutrema salsugineum HOM05D003588 ORTHO05D004252 8.4e-12 75.9 54 74.1
BcaB08g36855 Brassica carinata HOM05D003588 ORTHO05D004252 9.2e-11 72.4 86 53.5
CSS0049688 Camellia sinensis var. sinensis HOM05D003588 ORTHO05D004252 1.3e-09 68.6 44 77.3
Aa31sc24G110 Aethionema arabicum HOM05D003588 ORTHO05D004252 1.9e-08 64.7 51 66.7
MD17G1249200 Malus domestica HOM05D003588 ORTHO05D004252 2.8e-07 60.8 41 68.3
CDE09G1345 Ceratophyllum demersum HOM05D003588 ORTHO05D004252 5.2e-06 56.6 46 52.2


User provided reference genes

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