Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
BcaC04g18875 Brassica carinata HOM05D005439 ORTHO05D006793 2.8e-45 184.9 92 100.0
BolC9t58901H Brassica oleracea HOM05D005439 ORTHO05D006793 1.4e-44 182.6 92 98.9
C09p60700 Brassica napus HOM05D005439 ORTHO05D006793 8.0e-32 140.2 69 100.0
BraA02t05327Z Brassica rapa HOM05D005439 ORTHO05D006793 1.0e-26 123.2 71 87.3
C02p08370 Brassica napus HOM05D005439 ORTHO05D006793 1.3e-26 122.9 71 87.3
BolC2t06755H Brassica oleracea HOM05D005439 ORTHO05D006793 1.3e-26 122.9 71 87.3
BcaB08g36849 Brassica carinata HOM05D005439 ORTHO05D006793 2.2e-26 122.1 71 84.5
A02p03560 Brassica napus HOM05D005439 ORTHO05D006793 1.9e-25 119.0 71 85.9
BcaC03g18493 Brassica carinata HOM05D005439 ORTHO05D006793 2.5e-25 118.6 71 85.9
Sp6g27700 Schrenkiella parvula HOM05D005439 ORTHO05D006793 2.1e-24 115.5 70 80.0
CARHR090470 Cardamine hirsuta HOM05D005439 ORTHO05D006793 3.0e-23 111.7 71 78.9
AT3G15420 Arabidopsis thaliana HOM05D005439 ORTHO05D006793 7.0e-20 100.5 74 75.7
THA.LOC104815550 Tarenaya hassleriana HOM05D005439 ORTHO05D006793 1.2e-19 99.8 65 75.4
Thhalv10021755m.g Eutrema salsugineum HOM05D005439 ORTHO05D006793 7.7e-19 97.1 71 69.0
Carub.0003s1515 Capsella rubella HOM05D005439 ORTHO05D006793 1.0e-18 96.7 67 79.1
Aa31LG8G2660 Aethionema arabicum HOM05D005439 ORTHO05D006793 1.3e-18 96.3 69 69.6
AT1G80745 Arabidopsis thaliana HOM05D005439 ORTHO05D006793 3.8e-18 94.7 73 75.3
AL3G27970 Arabidopsis lyrata HOM05D005439 ORTHO05D006793 4.2e-17 91.3 70 72.9
AL2G40660 Arabidopsis lyrata HOM05D005439 ORTHO05D006793 8.8e-15 83.6 72 69.4
Ciclev10009838m.g Citrus clementina HOM05D005439 ORTHO05D006793 5.9e-11 70.9 112 42.9
Thecc.07G077600 Theobroma cacao HOM05D005439 ORTHO05D006793 5.9e-11 70.9 87 44.8
Peaxi162Scf00998g00023 Petunia axillaris HOM05D005439 ORTHO05D006793 5.0e-10 67.8 86 46.5
Cpa.g.sc53.123 Carica papaya HOM05D005439 ORTHO05D006793 6.6e-10 67.4 79 44.3
Sabra11G0107800 Salix brachista HOM05D005439 ORTHO05D006793 8.6e-10 67.0 88 44.3
Potri.011G121800 Populus trichocarpa HOM05D005439 ORTHO05D006793 1.5e-09 66.2 78 46.2
AUR62034281 Chenopodium quinoa HOM05D005439 ORTHO05D006793 1.9e-09 65.9 89 43.8
Actinidia01110 Actinidia chinensis HOM05D005439 ORTHO05D006793 3.3e-09 65.1 81 42.0
CiPaw.08G146000 Carya illinoinensis HOM05D005439 ORTHO05D006793 3.3e-09 65.1 89 42.7
Sc18g0002800 Simmondsia chinensis HOM05D005439 ORTHO05D006793 3.3e-09 65.1 72 47.2
Nitab4.5_0003769g0120 Nicotiana tabacum HOM05D005439 ORTHO05D006793 4.3e-09 64.7 86 43.0
Solyc07g063290.3 Solanum lycopersicum HOM05D005439 ORTHO05D006793 4.3e-09 64.7 83 44.6
Gohir.A05G386100 Gossypium hirsutum HOM05D005439 ORTHO05D006793 5.6e-09 64.3 78 44.9
Gohir.A08G188900 Gossypium hirsutum HOM05D005439 ORTHO05D006793 5.6e-09 64.3 78 44.9
Gohir.A11G204100 Gossypium hirsutum HOM05D005439 ORTHO05D006793 5.6e-09 64.3 78 44.9
Gohir.A11G282786 Gossypium hirsutum HOM05D005439 ORTHO05D006793 5.6e-09 64.3 78 44.9
Gohir.D08G040300 Gossypium hirsutum HOM05D005439 ORTHO05D006793 5.6e-09 64.3 78 44.9
Gohir.D10G173200 Gossypium hirsutum HOM05D005439 ORTHO05D006793 5.6e-09 64.3 78 44.9
Gohir.D11G168400 Gossypium hirsutum HOM05D005439 ORTHO05D006793 5.6e-09 64.3 78 44.9
Gorai.007G319700 Gossypium raimondii HOM05D005439 ORTHO05D006793 5.6e-09 64.3 78 44.9
SalBow7G3564 Salvia bowleyana HOM05D005439 ORTHO05D006793 9.5e-09 63.5 67 47.8
Gohir.D13G039100 Gossypium hirsutum HOM05D005439 ORTHO05D006793 1.2e-08 63.2 78 44.9
Manes.15G085800 Manihot esculenta HOM05D005439 ORTHO05D006793 1.2e-08 63.2 79 43.0
Gohir.D11G296600 Gossypium hirsutum HOM05D005439 ORTHO05D006793 1.6e-08 62.8 78 43.6
EL10Ac4g09544 Beta vulgaris HOM05D005439 ORTHO05D006793 2.1e-08 62.4 85 42.4
Migut.H01926 Erythranthe guttata HOM05D005439 ORTHO05D006793 2.1e-08 62.4 67 50.7
Gohir.D09G236700 Gossypium hirsutum HOM05D005439 ORTHO05D006793 2.1e-08 62.4 78 44.9
Dinv04318 Davidia involucrata HOM05D005439 ORTHO05D006793 2.8e-08 62.0 90 37.8
Medtr2g079590 Medicago truncatula HOM05D005439 ORTHO05D006793 2.8e-08 62.0 78 43.6
Sed0010430 Sechium edule HOM05D005439 ORTHO05D006793 2.8e-08 62.0 77 42.9
Hund22944 Selenicereus undatus HOM05D005439 ORTHO05D006793 2.8e-08 62.0 75 45.3
Sopen07g031460 Solanum pennellii HOM05D005439 ORTHO05D006793 2.8e-08 62.0 86 43.0
PGSC0003DMG400001562 Solanum tuberosum HOM05D005439 ORTHO05D006793 2.8e-08 62.0 86 43.0
Atru.chr2.2728 Acer truncatum HOM05D005439 ORTHO05D006793 3.6e-08 61.6 76 48.7
Atru.chr2.2729 Acer truncatum HOM05D005439 ORTHO05D006793 3.6e-08 61.6 76 48.7
Duzib170G0676 Durio zibethinus HOM05D005439 ORTHO05D006793 3.6e-08 61.6 81 42.0
Oeu037221.1 Olea europaea HOM05D005439 ORTHO05D006793 3.6e-08 61.6 73 43.8
Glyma.13G278900 Glycine max HOM05D005439 ORTHO05D006793 4.7e-08 61.2 78 41.0
Gohir.A08G058200 Gossypium hirsutum HOM05D005439 ORTHO05D006793 4.7e-08 61.2 78 43.6
ClCG11G007090 Citrullus lanatus HOM05D005439 ORTHO05D006793 6.1e-08 60.8 73 45.2
Rhsim04G0164900 Rhododendron simsii HOM05D005439 ORTHO05D006793 8.0e-08 60.5 85 42.4
Lalb_Chr20g0109751 Lupinus albus HOM05D005439 ORTHO05D006793 1.0e-07 60.1 78 39.7
MBI18_g17006_MAGBIO Magnolia biondii HOM05D005439 ORTHO05D006793 1.0e-07 60.1 55 54.5
Psat5g245080 Pisum sativum HOM05D005439 ORTHO05D006793 1.0e-07 60.1 78 39.7
TWI15G0142 Tripterygium wilfordii HOM05D005439 ORTHO05D006793 1.0e-07 60.1 86 44.2
CiPaw.12G120500 Carya illinoinensis HOM05D005439 ORTHO05D006793 1.4e-07 59.7 81 42.0
Cc04_g05330 Coffea canephora HOM05D005439 ORTHO05D006793 1.4e-07 59.7 84 41.7
PGSC0003DMG400012454 Solanum tuberosum HOM05D005439 ORTHO05D006793 1.4e-07 59.7 86 41.9
MD03G1224300 Malus domestica HOM05D005439 ORTHO05D006793 1.8e-07 59.3 76 43.4
vmacro08610 Vaccinium macrocarpon HOM05D005439 ORTHO05D006793 1.8e-07 59.3 80 37.5
COL.COLO4_09427 Corchorus olitorius HOM05D005439 ORTHO05D006793 2.3e-07 58.9 77 42.9
RcHm_v2.0_Chr6g0279991 Rosa chinensis HOM05D005439 ORTHO05D006793 2.3e-07 58.9 86 40.7
CSS0022813 Camellia sinensis var. sinensis HOM05D005439 ORTHO05D006793 3.0e-07 58.5 89 37.1
Eucgr.I00444 Eucalyptus grandis HOM05D005439 ORTHO05D006793 3.0e-07 58.5 78 39.7
RcHm_v2.0_Chr5g0034441 Rosa chinensis HOM05D005439 ORTHO05D006793 3.0e-07 58.5 86 40.7
DCAR_000742 Daucus carota HOM05D005439 ORTHO05D006793 4.0e-07 58.2 75 44.0
TPR.G16054 Trifolium pratense HOM05D005439 ORTHO05D006793 4.0e-07 58.2 78 41.0
TAR624G0176 Trochodendron aralioides HOM05D005439 ORTHO05D006793 5.2e-07 57.8 76 42.1
Nn1g04026 Nelumbo nucifera HOM05D005439 ORTHO05D006793 6.8e-07 57.4 88 38.6
CAN.G162.72 Capsicum annuum HOM05D005439 ORTHO05D006793 8.9e-07 57.0 75 44.0
Sed0007807 Sechium edule HOM05D005439 ORTHO05D006793 8.9e-07 57.0 77 41.6
Carub.0002s2680 Capsella rubella HOM05D005439 ORTHO05D006793 1.2e-06 56.6 40 65.0
Prupe.4G185100 Prunus persica HOM05D005439 ORTHO05D006793 1.5e-06 56.2 85 41.2
TAR626G0706 Trochodendron aralioides HOM05D005439 ORTHO05D006793 1.5e-06 56.2 76 40.8
Eucgr.L03232 Eucalyptus grandis HOM05D005439 ORTHO05D006793 2.0e-06 55.8 78 38.5
Gorai.010G125600 Gossypium raimondii HOM05D005439 ORTHO05D006793 2.0e-06 55.8 78 43.6
Gorai.012G015600 Gossypium raimondii HOM05D005439 ORTHO05D006793 2.0e-06 55.8 78 43.6
Gorai.013G039600 Gossypium raimondii HOM05D005439 ORTHO05D006793 2.6e-06 55.5 78 43.6
PSO541G3703 Papaver somniferum HOM05D005439 ORTHO05D006793 2.6e-06 55.5 93 41.9
PGR031G3442 Punica granatum HOM05D005439 ORTHO05D006793 2.6e-06 55.5 73 43.8
HanXRQChr04g0095481 Helianthus annuus HOM05D005439 ORTHO05D006793 4.4e-06 54.7 88 35.2
PSO675G4650 Papaver somniferum HOM05D005439 ORTHO05D006793 4.4e-06 54.7 76 43.4
Haze_09469 Corylus avellana HOM05D005439 ORTHO05D006793 5.7e-06 54.3 88 40.9
Gorai.007G117500 Gossypium raimondii HOM05D005439 ORTHO05D006793 7.5e-06 53.9 78 42.3
QL08p019954 Quercus lobata HOM05D005439 ORTHO05D006793 9.8e-06 53.5 89 39.3


User provided reference genes

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