Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
BcaC04g18846 Brassica carinata HOM05D004822 ORTHO05D005632 1.2e-103 379.8 187 100.0
C09p60280 Brassica napus HOM05D004822 ORTHO05D005632 7.4e-93 344.0 175 95.4
BcaC04g18845 Brassica carinata HOM05D004822 ORTHO05D005632 2.1e-92 342.4 175 94.9
A10p22430 Brassica napus HOM05D004822 ORTHO05D005632 8.2e-92 340.5 175 94.3
CARHR196360 Cardamine hirsuta HOM05D004822 ORTHO05D005632 1.0e-86 323.6 175 89.1
Sp6g27330 Schrenkiella parvula HOM05D004822 ORTHO05D005632 1.3e-86 323.2 175 89.1
Carub.0006s1502 Capsella rubella HOM05D004822 ORTHO05D005632 3.9e-86 321.6 175 88.6
AL6G27820 Arabidopsis lyrata HOM05D004822 ORTHO05D005632 2.2e-84 315.8 175 88.0
BolC9t58861H Brassica oleracea HOM05D004822 ORTHO05D005632 8.2e-84 313.9 180 88.3
A03p07960 Brassica napus HOM05D004822 ORTHO05D005632 6.9e-83 310.8 176 87.5
BraA03t10121Z Brassica rapa HOM05D004822 ORTHO05D005632 6.9e-83 310.8 176 87.5
AT5G16800 Arabidopsis thaliana HOM05D004822 ORTHO05D005632 1.5e-82 309.7 175 85.7
BraA10t44302Z Brassica rapa HOM05D004822 ORTHO05D005632 2.0e-82 309.3 186 84.9
BcaB01g04968 Brassica carinata HOM05D004822 ORTHO05D005632 1.3e-81 306.6 176 86.4
Thhalv10014541m.g Eutrema salsugineum HOM05D004822 ORTHO05D005632 6.5e-81 304.3 175 85.1
C03p09170 Brassica napus HOM05D004822 ORTHO05D005632 7.2e-80 300.8 175 85.7
BcaB01g05242 Brassica carinata HOM05D004822 ORTHO05D005632 2.1e-79 299.3 175 85.1
BolC3t13414H Brassica oleracea HOM05D004822 ORTHO05D005632 2.1e-79 299.3 175 85.1
Aa31LG11G12780 Aethionema arabicum HOM05D004822 ORTHO05D005632 2.5e-77 292.4 176 84.1
THA.LOC104827203 Tarenaya hassleriana HOM05D004822 ORTHO05D005632 1.4e-70 270.0 170 78.2
THA.LOC104820895 Tarenaya hassleriana HOM05D004822 ORTHO05D005632 3.9e-70 268.5 170 78.8
Carub.0003s0211 Capsella rubella HOM05D004822 ORTHO05D005632 5.5e-64 248.1 175 71.4
Sp3g02040 Schrenkiella parvula HOM05D004822 ORTHO05D005632 3.6e-63 245.4 173 72.3
AT3G02980 Arabidopsis thaliana HOM05D004822 ORTHO05D005632 2.0e-58 229.6 153 74.5
Thecc.05G215800 Theobroma cacao HOM05D004822 ORTHO05D005632 4.5e-58 228.4 171 63.2
COL.COLO4_15238 Corchorus olitorius HOM05D004822 ORTHO05D005632 1.3e-57 226.9 165 64.8
A05p44150 Brassica napus HOM05D004822 ORTHO05D005632 2.9e-57 225.7 162 69.1
BraSC90t46695Z Brassica rapa HOM05D004822 ORTHO05D005632 2.9e-57 225.7 162 69.1
arahy.Tifrunner.gnm1.ann1.UL380H Arachis hypogaea HOM05D004822 ORTHO05D005632 3.8e-57 225.3 175 60.6
BolC5t35048H Brassica oleracea HOM05D004822 ORTHO05D005632 5.0e-57 224.9 158 70.3
Duzib177G1199 Durio zibethinus HOM05D004822 ORTHO05D005632 1.9e-56 223.0 175 63.4
Sabra13G0073000 Salix brachista HOM05D004822 ORTHO05D005632 1.9e-56 223.0 174 62.1
TWI12G0583 Tripterygium wilfordii HOM05D004822 ORTHO05D005632 2.5e-56 222.6 175 62.3
arahy.Tifrunner.gnm1.ann1.TC8PXF Arachis hypogaea HOM05D004822 ORTHO05D005632 3.2e-56 222.2 172 59.9
Cfa016047 Carpinus fangiana HOM05D004822 ORTHO05D005632 4.2e-56 221.9 165 62.4
Ciclev10021817m.g Citrus clementina HOM05D004822 ORTHO05D005632 9.4e-56 220.7 165 63.6
Duzib106G0609 Durio zibethinus HOM05D004822 ORTHO05D005632 1.6e-55 219.9 175 63.4
Dinv17249 Davidia involucrata HOM05D004822 ORTHO05D005632 4.7e-55 218.4 175 62.3
Dinv29145 Davidia involucrata HOM05D004822 ORTHO05D005632 4.7e-55 218.4 167 61.1
Lalb_Chr01g0000881 Lupinus albus HOM05D004822 ORTHO05D005632 6.1e-55 218.0 175 58.9
Prupe.2G327400 Prunus persica HOM05D004822 ORTHO05D005632 6.1e-55 218.0 176 60.2
Manes.09G127500 Manihot esculenta HOM05D004822 ORTHO05D005632 8.0e-55 217.6 168 63.7
QL09p023219 Quercus lobata HOM05D004822 ORTHO05D005632 1.8e-54 216.5 165 59.4
Lalb_Chr19g0140001 Lupinus albus HOM05D004822 ORTHO05D005632 3.0e-54 215.7 175 58.9
TWI18G0151 Tripterygium wilfordii HOM05D004822 ORTHO05D005632 3.0e-54 215.7 175 60.0
Glyma.11G009600 Glycine max HOM05D004822 ORTHO05D005632 5.2e-54 214.9 175 58.3
Phvul.002G040700 Phaseolus vulgaris HOM05D004822 ORTHO05D005632 6.8e-54 214.5 175 58.3
Atru.chr12.1891 Acer truncatum HOM05D004822 ORTHO05D005632 2.6e-53 212.6 165 60.6
Hma1.2p1_0649F.1_g195250 Hydrangea macrophylla HOM05D004822 ORTHO05D005632 3.4e-53 212.2 175 59.4
MD07G1309700 Malus domestica HOM05D004822 ORTHO05D005632 3.4e-53 212.2 175 57.1
RcHm_v2.0_Chr1g0384361 Rosa chinensis HOM05D004822 ORTHO05D005632 4.4e-53 211.8 177 58.8
MD01G1237100 Malus domestica HOM05D004822 ORTHO05D005632 1.3e-52 210.3 175 57.1
FvH4_7g34080 Fragaria vesca HOM05D004822 ORTHO05D005632 1.7e-52 209.9 177 58.2
Cc02_g00190 Coffea canephora HOM05D004822 ORTHO05D005632 2.8e-52 209.1 170 56.5
Gohir.D08G241600 Gossypium hirsutum HOM05D004822 ORTHO05D005632 3.7e-52 208.8 175 60.0
GSVIVG01024375001 Vitis vinifera HOM05D004822 ORTHO05D005632 3.7e-52 208.8 165 60.0
Glyma.01G233200 Glycine max HOM05D004822 ORTHO05D005632 4.8e-52 208.4 175 56.6
CiPaw.06G034300 Carya illinoinensis HOM05D004822 ORTHO05D005632 6.3e-52 208.0 177 58.8
ClCG09G016920 Citrullus lanatus HOM05D004822 ORTHO05D005632 6.3e-52 208.0 175 57.1
MELO3C021888.2 Cucumis melo HOM05D004822 ORTHO05D005632 6.3e-52 208.0 175 57.1
Aa31LG5G13470 Aethionema arabicum HOM05D004822 ORTHO05D005632 1.1e-51 207.2 148 65.5
Gohir.A08G221666 Gossypium hirsutum HOM05D004822 ORTHO05D005632 1.1e-51 207.2 175 60.0
CiPaw.05G216100 Carya illinoinensis HOM05D004822 ORTHO05D005632 1.4e-51 206.8 175 56.6
AUR62002079 Chenopodium quinoa HOM05D004822 ORTHO05D005632 3.1e-51 205.7 168 56.0
AUR62028196 Chenopodium quinoa HOM05D004822 ORTHO05D005632 3.1e-51 205.7 168 56.5
Migut.F00086 Erythranthe guttata HOM05D004822 ORTHO05D005632 3.1e-51 205.7 166 60.2
TAR362G0773 Trochodendron aralioides HOM05D004822 ORTHO05D005632 3.1e-51 205.7 175 60.0
CANSAT56G1711 Cannabis sativa HOM05D004822 ORTHO05D005632 4.1e-51 205.3 167 57.5
Gorai.004G256900 Gossypium raimondii HOM05D004822 ORTHO05D005632 4.1e-51 205.3 175 58.9
Aqoxy3G02240 Aquilegia oxysepala HOM05D004822 ORTHO05D005632 5.4e-51 204.9 165 60.6
DCAR_020414 Daucus carota HOM05D004822 ORTHO05D005632 5.4e-51 204.9 165 57.0
Sed0007243 Sechium edule HOM05D004822 ORTHO05D005632 5.4e-51 204.9 175 56.0
Nitab4.5_0000021g0700 Nicotiana tabacum HOM05D004822 ORTHO05D005632 7.0e-51 204.5 170 57.6
Psat2g189120 Pisum sativum HOM05D004822 ORTHO05D005632 7.0e-51 204.5 177 57.1
Peaxi162Scf00516g00674 Petunia axillaris HOM05D004822 ORTHO05D005632 9.1e-51 204.1 166 57.8
Solyc03g097140.3 Solanum lycopersicum HOM05D004822 ORTHO05D005632 9.1e-51 204.1 170 55.9
CsaV3_2G036410 Cucumis sativus L. HOM05D004822 ORTHO05D005632 1.2e-50 203.8 175 56.0
Potri.013G079900 Populus trichocarpa HOM05D004822 ORTHO05D005632 1.2e-50 203.8 144 66.0
Potri.019G050700 Populus trichocarpa HOM05D004822 ORTHO05D005632 1.2e-50 203.8 175 57.7
Nitab4.5_0004530g0010 Nicotiana tabacum HOM05D004822 ORTHO05D005632 1.6e-50 203.4 170 57.1
Hund09803 Selenicereus undatus HOM05D004822 ORTHO05D005632 2.7e-50 202.6 175 55.4
TPR.G37975 Trifolium pratense HOM05D004822 ORTHO05D005632 2.7e-50 202.6 177 57.1
Medtr5g007400 Medicago truncatula HOM05D004822 ORTHO05D005632 3.5e-50 202.2 177 56.5
Rhsim03G0222800 Rhododendron simsii HOM05D004822 ORTHO05D005632 3.5e-50 202.2 175 56.0
MSTRG.26924 Avicennia marina HOM05D004822 ORTHO05D005632 4.5e-50 201.8 171 56.1
Sc25g0001230 Simmondsia chinensis HOM05D004822 ORTHO05D005632 5.9e-50 201.4 171 57.9
EL10Ac3g05059 Beta vulgaris HOM05D004822 ORTHO05D005632 7.7e-50 201.1 165 57.0
HanXRQChr08g0231351 Helianthus annuus HOM05D004822 ORTHO05D005632 1.0e-49 200.7 172 55.8
CAN.G1131.24 Capsicum annuum HOM05D004822 ORTHO05D005632 1.3e-49 200.3 166 56.0
HanXRQChr16g0512131 Helianthus annuus HOM05D004822 ORTHO05D005632 2.9e-49 199.1 172 55.8
ECA232G1387 Erigeron canadensis HOM05D004822 ORTHO05D005632 6.5e-49 198.0 165 56.4
LjContig00222g0020254 Lotus japonicus HOM05D004822 ORTHO05D005632 8.5e-49 197.6 184 53.8
PGSC0003DMG400003148 Solanum tuberosum HOM05D004822 ORTHO05D005632 1.9e-48 196.4 196 49.5
CSS0024551 Camellia sinensis var. sinensis HOM05D004822 ORTHO05D005632 2.5e-48 196.1 162 56.2
Ah.04g156230 Amaranthus hybridus HOM05D004822 ORTHO05D005632 3.2e-48 195.7 170 53.5
vmacro06525 Vaccinium macrocarpon HOM05D004822 ORTHO05D005632 3.2e-48 195.7 165 57.0
Actinidia08752 Actinidia chinensis HOM05D004822 ORTHO05D005632 5.5e-48 194.9 140 63.6
CSS0024699 Camellia sinensis var. sinensis HOM05D004822 ORTHO05D005632 9.4e-48 194.1 162 55.6
Nitab4.5_0000150g0020 Nicotiana tabacum HOM05D004822 ORTHO05D005632 1.2e-47 193.7 159 57.2
SalBow4G2092 Salvia bowleyana HOM05D004822 ORTHO05D005632 8.0e-47 191.0 186 51.6
SalBow4G3298 Salvia bowleyana HOM05D004822 ORTHO05D005632 8.0e-47 191.0 186 51.6
Duzib128G1067 Durio zibethinus HOM05D004822 ORTHO05D005632 1.4e-46 190.3 159 61.0
PGR042G2086 Punica granatum HOM05D004822 ORTHO05D005632 5.2e-46 188.3 175 52.6
DCAR_010536 Daucus carota HOM05D004822 ORTHO05D005632 2.6e-45 186.0 195 47.7
Oeu007515.1 Olea europaea HOM05D004822 ORTHO05D005632 4.4e-45 185.3 171 51.5
Sopen03g027880 Solanum pennellii HOM05D004822 ORTHO05D005632 4.4e-45 185.3 225 44.0
CSS0013609 Camellia sinensis var. sinensis HOM05D004822 ORTHO05D005632 8.3e-44 181.0 160 55.0
SHI29591 Sapria himalayana HOM05D004822 ORTHO05D005632 1.4e-43 180.3 168 53.6
CSS0045344 Camellia sinensis var. sinensis HOM05D004822 ORTHO05D005632 2.4e-43 179.5 160 54.4
Eucgr.K00079 Eucalyptus grandis HOM05D004822 ORTHO05D005632 2.4e-43 179.5 148 57.4
Peaxi162Scf00133g00611 Petunia axillaris HOM05D004822 ORTHO05D005632 9.1e-43 177.6 199 43.7
HPP92_014856 Vanilla planifolia HOM05D004822 ORTHO05D005632 2.3e-41 172.9 167 50.9
Haze_00399 Corylus avellana HOM05D004822 ORTHO05D005632 5.0e-41 171.8 110 69.1
unitig_747.g21929 Utricularia gibba HOM05D004822 ORTHO05D005632 1.9e-40 169.9 164 50.0
AL3G12440 Arabidopsis lyrata HOM05D004822 ORTHO05D005632 2.5e-40 169.5 123 69.1
Lj3g0022054 Lotus japonicus HOM05D004822 ORTHO05D005632 9.5e-40 167.5 139 55.4
CDE06G0869 Ceratophyllum demersum HOM05D000380 ORTHO05D000561 1.2e-39 167.2 146 56.8
Nitab4.5_0001108g0050 Nicotiana tabacum HOM05D004822 ORTHO05D005632 1.6e-39 166.8 160 51.2
TAR374G1016 Trochodendron aralioides HOM05D004822 ORTHO05D005632 3.6e-39 165.6 171 50.3
Lj3A886T38 Lonicera japonica HOM05D004822 ORTHO05D005632 4.7e-39 165.2 110 68.2
arahy.Tifrunner.gnm1.ann1.YEB8JM Arachis hypogaea HOM05D004822 ORTHO05D005632 1.0e-38 164.1 153 54.2
SEGI_16512 Sequoiadendron giganteum HOM05D004822 ORTHO05D005632 4.0e-38 162.2 149 52.3
SGA_v2.0_scaffold44G16902 Striga asiatica HOM05D004822 ORTHO05D005632 4.4e-37 158.7 128 57.0
C05p63790 Brassica napus HOM05D000387 ORTHO05D005632 1.7e-36 156.8 118 67.8
Eucgr.H04873 Eucalyptus grandis HOM05D004822 ORTHO05D005632 2.2e-36 156.4 110 66.4
Mapoly0133s0015 Marchantia polymorpha HOM05D004822 ORTHO05D005632 8.3e-36 154.5 157 46.5
arahy.Tifrunner.gnm1.ann1.IXL9K3 Arachis hypogaea HOM05D004822 ORTHO05D005632 1.1e-35 154.1 103 68.9
Nn1g00175 Nelumbo nucifera HOM05D004822 ORTHO05D005632 3.2e-35 152.5 110 64.5
Zm00001eb251310 Zea mays HOM05D004822 ORTHO05D005632 9.2e-35 151.0 110 63.6
Pp3c19_16350 Physcomitrium patens HOM05D004822 ORTHO05D005632 6.6e-33 144.8 129 51.2
ATR0829G204 Amborella trichopoda HOM05D004822 ORTHO05D005632 1.1e-32 144.1 109 59.6
Pp3c21_19030 Physcomitrium patens HOM05D004822 ORTHO05D005632 2.1e-31 139.8 129 48.8
Rhsim09G0213500 Rhododendron simsii HOM05D004822 ORTHO05D005632 2.0e-29 133.3 149 47.7
SMO146G0253 Selaginella moellendorffii HOM05D004822 ORTHO05D005632 2.2e-28 129.8 106 55.7
arahy.Tifrunner.gnm1.ann1.KDM1H7 Arachis hypogaea HOM05D004822 ORTHO05D005632 7.0e-27 124.8 133 47.4
arahy.Tifrunner.gnm1.ann1.U456D3 Arachis hypogaea HOM05D004822 ORTHO05D005632 2.0e-26 123.2 133 45.9
Os02g0694201 Oryza sativa ssp. japonica HOM05D004822 ORTHO05D005632 1.0e-25 120.9 120 45.8
BcaC05g30307 Brassica carinata HOM05D004822 ORTHO05D005632 5.0e-25 118.6 86 68.6
Gohir.D13G099300 Gossypium hirsutum HOM05D004822 ORTHO05D005632 9.5e-24 114.4 84 66.7
Gorai.013G103600 Gossypium raimondii HOM05D004822 ORTHO05D005632 9.5e-24 114.4 84 66.7
Sed0002247 Sechium edule HOM05D004822 ORTHO05D005632 1.2e-23 114.0 105 49.5
PGR142G2504 Punica granatum HOM05D004822 ORTHO05D005632 8.1e-23 111.3 100 51.0
vmacro22183 Vaccinium macrocarpon HOM05D004822 ORTHO05D005632 9.2e-19 97.8 81 58.0
SHI02573 Sapria himalayana HOM05D004822 ORTHO05D005632 2.1e-18 96.7 63 63.5
BcaC05g30339 Brassica carinata HOM05D004822 ORTHO05D005632 3.0e-17 92.8 171 40.4
Lsat_1_v5_gn_9_47720 Lactuca sativa HOM05D004822 ORTHO05D005632 6.8e-14 81.6 67 59.7
PRCOL_00005145 Prasinoderma coloniale HOM05D004822 ORTHO05D005632 1.3e-12 77.4 97 38.1
SMO356G0009 Selaginella moellendorffii HOM05D004398 ORTHO05D005268 8.1e-07 58.2 81 39.5
vmacro05207 Vaccinium macrocarpon HOM05D004398 ORTHO05D005268 1.8e-06 57.0 96 34.4
Cre13.g572150 Chlamydomonas reinhardtii HOM05D004822 ORTHO05D005632 3.1e-06 56.2 92 38.0
PRCOL_00002723 Prasinoderma coloniale HOM05D004398 ORTHO05D005268 4.0e-06 55.8 68 38.2
MSTRG.25860 Avicennia marina HOM05D004398 ORTHO05D005268 5.2e-06 55.5 100 34.0
Lj7A716G42 Lonicera japonica HOM05D004398 ORTHO05D005268 5.2e-06 55.5 95 33.7
AL6G21990 Arabidopsis lyrata HOM05D004398 ORTHO05D005268 6.8e-06 55.1 80 36.2
Carub.0006s0980 Capsella rubella HOM05D004398 ORTHO05D005268 6.8e-06 55.1 80 36.2
Rhsim07G0150800 Rhododendron simsii HOM05D004398 ORTHO05D005268 6.8e-06 55.1 79 35.4
vmacro05203 Vaccinium macrocarpon HOM05D004398 ORTHO05D005268 6.8e-06 55.1 80 36.2


User provided reference genes

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