Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
BcaC04g18831 Brassica carinata HOM05D000237 ORTHO05D024009 1.7e-54 215.7 104 100.0
BcaC08g44599 Brassica carinata HOM05D000237 ORTHO05D024009 1.7e-51 205.7 104 96.2
C06p20710 Brassica napus HOM05D000237 ORTHO05D024009 5.6e-34 147.5 73 97.3
BolC6t37254H Brassica oleracea HOM05D000237 ORTHO05D024009 5.6e-34 147.5 73 97.3
Sp6g32910 Schrenkiella parvula HOM05D000237 ORTHO05D000535 4.2e-21 104.8 98 63.3
BolC2t06411H Brassica oleracea HOM05D000237 ORTHO05D000535 7.2e-21 104.0 145 46.9
Thhalv10013425m.g Eutrema salsugineum HOM05D000237 ORTHO05D000535 9.3e-21 103.6 98 63.3
C09p66740 Brassica napus HOM05D000237 ORTHO05D000535 1.2e-20 103.2 100 64.0
BolC9t59455H Brassica oleracea HOM05D000237 ORTHO05D000535 1.2e-20 103.2 100 64.0
A02p00520 Brassica napus HOM05D000237 ORTHO05D000535 3.5e-20 101.7 98 61.2
C02p04510 Brassica napus HOM05D000237 ORTHO05D000535 3.5e-20 101.7 145 46.2
BraA02t05036Z Brassica rapa HOM05D000237 ORTHO05D000535 4.6e-20 101.3 98 61.2
A10p27050 Brassica napus HOM05D000237 ORTHO05D000535 6.1e-20 100.9 100 62.0
BraA10t44757Z Brassica rapa HOM05D000237 ORTHO05D000535 6.1e-20 100.9 100 62.0
BcaB08g37090 Brassica carinata HOM05D000237 ORTHO05D000535 7.9e-20 100.5 99 62.6
CARHR279510 Cardamine hirsuta HOM05D000237 ORTHO05D000535 1.0e-19 100.1 145 44.1
Carub.0006s0900 Capsella rubella HOM05D000237 ORTHO05D000535 1.3e-19 99.8 98 61.2
CARHR202770 Cardamine hirsuta HOM05D000237 ORTHO05D000535 5.1e-19 97.8 92 62.0
Sp2g28630 Schrenkiella parvula HOM05D000237 ORTHO05D000535 5.1e-19 97.8 145 43.4
Aa31LG1G16480 Aethionema arabicum HOM05D000237 ORTHO05D000535 1.5e-18 96.3 145 42.1
BcaC03g13315 Brassica carinata HOM05D000237 ORTHO05D000535 1.9e-18 95.9 98 59.2
AL6G21040 Arabidopsis lyrata HOM05D000237 ORTHO05D000535 4.3e-18 94.7 98 60.2
AT5G10520 Arabidopsis thaliana HOM05D000237 ORTHO05D000535 4.8e-17 91.3 98 58.2
BcaC03g18342 Brassica carinata HOM05D000237 ORTHO05D000535 2.4e-16 89.0 145 42.1
Carub.0008s2639 Capsella rubella HOM05D000237 ORTHO05D000535 3.1e-16 88.6 88 58.0
BraA02t09323Z Brassica rapa HOM05D000237 ORTHO05D000535 4.1e-16 88.2 143 42.0
AT5G65530 Arabidopsis thaliana HOM05D000237 ORTHO05D000535 9.0e-16 87.0 144 41.0
BcaNung06931 Brassica carinata HOM05D000237 ORTHO05D000535 9.0e-16 87.0 145 40.7
C02p64220 Brassica napus HOM05D000237 ORTHO05D000535 9.0e-16 87.0 143 41.3
BolC2t12485H Brassica oleracea HOM05D000237 ORTHO05D000535 9.0e-16 87.0 143 41.3
BcaB05g21487 Brassica carinata HOM05D000237 ORTHO05D000535 2.0e-15 85.9 98 55.1
A02p43990 Brassica napus HOM05D000237 ORTHO05D000535 2.0e-15 85.9 143 40.6
A06p32380 Brassica napus HOM05D000237 ORTHO05D000535 2.0e-15 85.9 144 41.0
AL8G43120 Arabidopsis lyrata HOM05D000237 ORTHO05D000535 4.5e-15 84.7 144 40.3
BraA06t26163Z Brassica rapa HOM05D000237 ORTHO05D000535 4.5e-15 84.7 144 40.3
BcaC01g02785 Brassica carinata HOM05D000237 ORTHO05D000535 1.3e-14 83.2 147 39.5
C03p60450 Brassica napus HOM05D000237 ORTHO05D000535 1.3e-14 83.2 147 39.5
BolC3t18306H Brassica oleracea HOM05D000237 ORTHO05D000535 1.3e-14 83.2 147 39.5
Duzib187G1094 Durio zibethinus HOM05D000237 ORTHO05D000535 1.3e-14 83.2 135 39.3
Aa31LG3G16630 Aethionema arabicum HOM05D000237 ORTHO05D000535 3.8e-14 81.6 98 53.1
Cpa.g.sc55.14 Carica papaya HOM05D000237 ORTHO05D000535 8.5e-14 80.5 141 38.3
Thecc.01G089200 Theobroma cacao HOM05D000237 ORTHO05D000535 2.5e-13 79.0 144 36.1
COL.COLO4_27368 Corchorus olitorius HOM05D000237 ORTHO05D000535 5.5e-13 77.8 144 36.1
Gohir.A12G084700 Gossypium hirsutum HOM05D000237 ORTHO05D000535 5.5e-13 77.8 144 34.7
Gorai.008G092900 Gossypium raimondii HOM05D000237 ORTHO05D000535 7.2e-13 77.4 144 34.7
TWI53G0844 Tripterygium wilfordii HOM05D000237 ORTHO05D000535 7.2e-13 77.4 144 34.7
ClCG10G007810 Citrullus lanatus HOM05D000237 ORTHO05D000535 9.4e-13 77.0 147 34.7
Eucgr.I00565 Eucalyptus grandis HOM05D000237 ORTHO05D000535 9.4e-13 77.0 144 34.0
MELO3C014969.2 Cucumis melo HOM05D000237 ORTHO05D000535 1.6e-12 76.3 147 34.7
TAR628G1011 Trochodendron aralioides HOM05D000237 ORTHO05D000535 1.6e-12 76.3 144 36.1
CANSAT01G1388 Cannabis sativa HOM05D000237 ORTHO05D000535 4.6e-12 74.7 146 36.3
Duzib147G1415 Durio zibethinus HOM05D000237 ORTHO05D000535 6.1e-12 74.3 144 36.1
Lalb_Chr16g0381601 Lupinus albus HOM05D000237 ORTHO05D000535 7.9e-12 73.9 144 33.3
CsaV3_3G006920 Cucumis sativus L. HOM05D000237 ORTHO05D000535 1.0e-11 73.6 147 34.7
Ciclev10025570m.g Citrus clementina HOM05D000237 ORTHO05D000535 1.4e-11 73.2 143 35.0
Sabra07G0009100 Salix brachista HOM05D000237 ORTHO05D000535 1.4e-11 73.2 144 34.7
Eucgr.H04720 Eucalyptus grandis HOM05D000237 ORTHO05D000535 1.8e-11 72.8 144 34.7
CiPaw.07G046400 Carya illinoinensis HOM05D000237 ORTHO05D000535 2.3e-11 72.4 144 33.3
QL06p035923 Quercus lobata HOM05D000237 ORTHO05D000535 2.3e-11 72.4 144 34.0
Ca_22693_v3 Cicer arietinum L. HOM05D000237 ORTHO05D000535 3.9e-11 71.6 145 33.8
Phvul.003G288300 Phaseolus vulgaris HOM05D000237 ORTHO05D000535 5.1e-11 71.2 145 33.1
VMungo0251G2664 Vigna mungo HOM05D000237 ORTHO05D000535 5.1e-11 71.2 145 33.1
C03p79340 Brassica napus HOM05D000237 ORTHO05D103046 6.7e-11 70.9 63 61.9
arahy.Tifrunner.gnm1.ann1.4I9AI1 Arachis hypogaea HOM05D000237 ORTHO05D000535 8.8e-11 70.5 145 31.7
arahy.Tifrunner.gnm1.ann1.BLG1SA Arachis hypogaea HOM05D000237 ORTHO05D000535 8.8e-11 70.5 145 31.7
Glyma.18G148100 Glycine max HOM05D000237 ORTHO05D000535 8.8e-11 70.5 145 33.1
Manes.12G125400 Manihot esculenta HOM05D000237 ORTHO05D000535 1.1e-10 70.1 144 32.6
CSS0025400 Camellia sinensis var. sinensis HOM05D000237 ORTHO05D000535 1.5e-10 69.7 144 32.6
CSS0049382 Camellia sinensis var. sinensis HOM05D000237 ORTHO05D000535 1.5e-10 69.7 144 32.6
MD01G1040800 Malus domestica HOM05D000237 ORTHO05D000535 1.5e-10 69.7 145 34.5
Migut.H02286 Erythranthe guttata HOM05D000237 ORTHO05D000535 2.0e-10 69.3 144 32.6
Nitab4.5_0003930g0010 Nicotiana tabacum HOM05D000237 ORTHO05D000535 2.0e-10 69.3 141 32.6
Rhsim08G0017100 Rhododendron simsii HOM05D000237 ORTHO05D000535 2.0e-10 69.3 144 33.3
Sed0020645 Sechium edule HOM05D000237 ORTHO05D000535 2.0e-10 69.3 146 31.5
CAN.G1344.23 Capsicum annuum HOM05D000237 ORTHO05D000535 2.5e-10 68.9 144 31.2
Dinv13590 Davidia involucrata HOM05D000237 ORTHO05D000535 2.5e-10 68.9 144 34.0
Potri.007G011700 Populus trichocarpa HOM05D000237 ORTHO05D000535 2.5e-10 68.9 144 33.3
Glyma.01G022400 Glycine max HOM05D000237 ORTHO05D000535 3.3e-10 68.6 145 32.4
Glyma.09G199900 Glycine max HOM05D000237 ORTHO05D000535 4.3e-10 68.2 146 31.5
Lj4g0004729 Lotus japonicus HOM05D000237 ORTHO05D000535 4.3e-10 68.2 145 32.4
Haze_03886 Corylus avellana HOM05D000237 ORTHO05D000535 5.7e-10 67.8 146 34.2
Gohir.A11G207300 Gossypium hirsutum HOM05D000237 ORTHO05D000535 5.7e-10 67.8 144 31.9
Lsat_1_v5_gn_2_70180 Lactuca sativa HOM05D000237 ORTHO05D000535 5.7e-10 67.8 144 29.9
Phvul.002G146300 Phaseolus vulgaris HOM05D000237 ORTHO05D000535 5.7e-10 67.8 145 32.4
VMungo1215G0441 Vigna mungo HOM05D000237 ORTHO05D000535 5.7e-10 67.8 145 31.0
Atru.chr3.1233 Acer truncatum HOM05D000237 ORTHO05D000535 7.4e-10 67.4 143 32.9
Lj2A533G45 Lonicera japonica HOM05D000237 ORTHO05D000535 7.4e-10 67.4 145 30.3
RcHm_v2.0_Chr2g0111001 Rosa chinensis HOM05D000237 ORTHO05D000535 7.4e-10 67.4 145 33.8
Solyc11g010730.3 Solanum lycopersicum HOM05D000237 ORTHO05D000535 7.4e-10 67.4 144 31.9
Sopen11g005540 Solanum pennellii HOM05D000237 ORTHO05D000535 7.4e-10 67.4 144 31.9
PGSC0003DMG400016126 Solanum tuberosum HOM05D000237 ORTHO05D000535 7.4e-10 67.4 144 31.9
Lj2g0025986 Lotus japonicus HOM05D000237 ORTHO05D000535 9.7e-10 67.0 145 31.7
MD15G1310700 Malus domestica HOM05D000237 ORTHO05D000535 9.7e-10 67.0 145 33.8
CSS0049264 Camellia sinensis var. sinensis HOM05D000237 ORTHO05D000535 1.3e-09 66.6 145 34.5
CSS0050249 Camellia sinensis var. sinensis HOM05D000237 ORTHO05D000535 1.3e-09 66.6 145 34.5
Gorai.007G232200 Gossypium raimondii HOM05D000237 ORTHO05D000535 1.3e-09 66.6 144 31.9
THA.LOC104801679 Tarenaya hassleriana HOM05D000237 ORTHO05D024009 1.3e-09 66.6 85 50.6
vmacro18549 Vaccinium macrocarpon HOM05D000237 ORTHO05D000535 1.3e-09 66.6 144 32.6
CiPaw.08G140900 Carya illinoinensis HOM05D000237 ORTHO05D000535 1.7e-09 66.2 144 31.9
Oeu046552.2 Olea europaea HOM05D000237 ORTHO05D000535 1.7e-09 66.2 144 30.6
Gohir.D11G216000 Gossypium hirsutum HOM05D000237 ORTHO05D000535 2.2e-09 65.9 144 31.2
Nitab4.5_0010932g0020 Nicotiana tabacum HOM05D000237 ORTHO05D000535 2.2e-09 65.9 85 41.2
MSTRG.23383 Avicennia marina HOM05D000237 ORTHO05D000535 2.8e-09 65.5 144 31.2
Lalb_Chr05g0216421 Lupinus albus HOM05D000237 ORTHO05D000535 2.8e-09 65.5 144 30.6
Sc03g0000420 Simmondsia chinensis HOM05D000237 ORTHO05D000535 3.7e-09 65.1 145 31.7
GSVIVG01002864001 Vitis vinifera HOM05D000237 ORTHO05D000535 3.7e-09 65.1 144 32.6
GSVIVG01004383001 Vitis vinifera HOM05D000237 ORTHO05D000535 3.7e-09 65.1 144 32.6
Peaxi162Scf00085g02210 Petunia axillaris HOM05D000237 ORTHO05D000535 4.8e-09 64.7 141 33.3
Cc07_g13990 Coffea canephora HOM05D000237 ORTHO05D000535 6.3e-09 64.3 144 30.6
HanXRQChr09g0259551 Helianthus annuus HOM05D000237 ORTHO05D000535 6.3e-09 64.3 144 29.9
AUR62003674 Chenopodium quinoa HOM05D000237 ORTHO05D000535 8.2e-09 63.9 146 28.8
FAN26G0707 Fragaria x ananassa HOM05D000237 ORTHO05D000535 8.2e-09 63.9 145 33.1
Medtr8g068390 Medicago truncatula HOM05D000237 ORTHO05D000535 8.2e-09 63.9 145 30.3
SGA_v2.0_scaffold45G17225 Striga asiatica HOM05D000237 ORTHO05D000535 8.2e-09 63.9 144 29.9
ECA232G1016 Erigeron canadensis HOM05D000237 ORTHO05D000535 1.1e-08 63.5 143 30.1
Actinidia06508 Actinidia chinensis HOM05D000237 ORTHO05D000535 1.4e-08 63.2 145 30.3
HanXRQChr07g0188791 Helianthus annuus HOM05D000237 ORTHO05D000535 1.4e-08 63.2 144 30.6
Sc16g0000580 Simmondsia chinensis HOM05D000237 ORTHO05D000535 1.4e-08 63.2 146 30.1
AUR62017984 Chenopodium quinoa HOM05D000237 ORTHO05D000535 1.8e-08 62.8 146 28.8
Rhsim10G0173600 Rhododendron simsii HOM05D000237 ORTHO05D000535 1.8e-08 62.8 146 32.2
SalBow5G1907 Salvia bowleyana HOM05D000237 ORTHO05D000535 1.8e-08 62.8 145 29.7
SalBow5G3717 Salvia bowleyana HOM05D000237 ORTHO05D000535 1.8e-08 62.8 145 29.7
Glyma.08G278700 Glycine max HOM05D000237 ORTHO05D000535 2.4e-08 62.4 98 38.8
Medtr5g031870 Medicago truncatula HOM05D000237 ORTHO05D000535 2.4e-08 62.4 145 29.7
PGSC0003DMG400023574 Solanum tuberosum HOM05D000237 ORTHO05D000535 2.4e-08 62.4 140 30.0
vmacro13013 Vaccinium macrocarpon HOM05D000237 ORTHO05D000535 2.4e-08 62.4 145 31.7
FvH4_1g19500 Fragaria vesca HOM05D000237 ORTHO05D000535 3.1e-08 62.0 145 32.4
FAN19G1859 Fragaria x ananassa HOM05D000237 ORTHO05D000535 4.1e-08 61.6 145 32.4
FAN28G2989 Fragaria x ananassa HOM05D000237 ORTHO05D000535 4.1e-08 61.6 145 32.4
Gohir.D03G035400 Gossypium hirsutum HOM05D000237 ORTHO05D000535 4.1e-08 61.6 146 30.1
Gorai.003G037000 Gossypium raimondii HOM05D000237 ORTHO05D000535 4.1e-08 61.6 146 30.1
Sed0022482 Sechium edule HOM05D000237 ORTHO05D000535 4.1e-08 61.6 153 30.1
Cfa006873 Carpinus fangiana HOM05D000237 ORTHO05D000535 5.3e-08 61.2 147 34.0
Migut.K00807 Erythranthe guttata HOM05D000237 ORTHO05D000535 5.3e-08 61.2 144 28.5
Gohir.A02G145200 Gossypium hirsutum HOM05D000237 ORTHO05D000535 5.3e-08 61.2 146 30.1
Oeu017107.3 Olea europaea HOM05D000237 ORTHO05D000535 5.3e-08 61.2 144 29.2
MSTRG.3725 Avicennia marina HOM05D000237 ORTHO05D000535 6.9e-08 60.8 145 29.7
HPP92_016699 Vanilla planifolia HOM05D000237 ORTHO05D000535 6.9e-08 60.8 144 29.2
Nn5g29853 Nelumbo nucifera HOM05D000237 ORTHO05D000535 9.1e-08 60.5 148 29.1
DCAR_003443 Daucus carota HOM05D000237 ORTHO05D000535 1.2e-07 60.1 144 29.9
Manes.13G100400 Manihot esculenta HOM05D000237 ORTHO05D000535 1.5e-07 59.7 145 30.3
Aqoxy5G01367 Aquilegia oxysepala HOM05D000237 ORTHO05D000535 2.0e-07 59.3 147 29.3
Nitab4.5_0000902g0350 Nicotiana tabacum HOM05D000237 ORTHO05D000535 2.6e-07 58.9 140 29.3
Peaxi162Scf00196g00318 Petunia axillaris HOM05D000237 ORTHO05D000535 2.6e-07 58.9 144 28.5
Solyc04g014410.4 Solanum lycopersicum HOM05D000237 ORTHO05D000535 3.4e-07 58.5 140 28.6
Sopen04g006550 Solanum pennellii HOM05D000237 ORTHO05D000535 3.4e-07 58.5 140 28.6
THA.LOC104819287 Tarenaya hassleriana HOM05D000237 ORTHO05D000535 3.4e-07 58.5 124 34.7
THA.LOC104820468 Tarenaya hassleriana HOM05D000237 ORTHO05D000535 3.4e-07 58.5 108 37.0
Gohir.D11G053500 Gossypium hirsutum HOM05D000237 ORTHO05D000535 7.7e-07 57.4 117 30.8
Gorai.007G058300 Gossypium raimondii HOM05D000237 ORTHO05D000535 7.7e-07 57.4 117 30.8
Lsat_1_v5_gn_4_143441 Lactuca sativa HOM05D000237 ORTHO05D000535 7.7e-07 57.4 143 28.0
Lalb_Chr05g0228541 Lupinus albus HOM05D000237 ORTHO05D000535 7.7e-07 57.4 82 37.8
Gohir.A11G050100 Gossypium hirsutum HOM05D000237 ORTHO05D000535 1.3e-06 56.6 117 29.9
Lju188A4G52 Lonicera japonica HOM05D000237 ORTHO05D000535 1.7e-06 56.2 85 35.3
Ca_22620_v3 Cicer arietinum L. HOM05D000237 ORTHO05D000535 2.2e-06 55.8 83 37.3
Nn1g05601 Nelumbo nucifera HOM05D000237 ORTHO05D000535 2.2e-06 55.8 148 31.8
C03p71220 Brassica napus HOM05D015351 ORTHO05D098430 2.9e-06 55.5 34 73.5
DCAR_014180 Daucus carota HOM05D000237 ORTHO05D000535 3.8e-06 55.1 145 25.5
HanXRQChr14g0443011 Helianthus annuus HOM05D000237 ORTHO05D000535 3.8e-06 55.1 144 28.5
Psat2g081680 Pisum sativum HOM05D000237 ORTHO05D000535 3.8e-06 55.1 145 28.3
CAN.G525.19 Capsicum annuum HOM05D000237 ORTHO05D000535 6.5e-06 54.3 142 28.2
Lj7A485G39 Lonicera japonica HOM05D000237 ORTHO05D000535 6.5e-06 54.3 118 33.9
MBI16_g27568_MAGBIO Magnolia biondii HOM05D000237 ORTHO05D000535 6.5e-06 54.3 88 36.4
TPR.G29836 Trifolium pratense HOM05D000237 ORTHO05D000535 8.5e-06 53.9 82 36.6


User provided reference genes

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