Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
BcaC04g18786 Brassica carinata HOM05D005188 ORTHO05D006153 4.6e-38 160.6 74 100.0
BcaB08g36594 Brassica carinata HOM05D005188 ORTHO05D006153 4.3e-36 154.1 74 95.9
BolC7t41311H Brassica oleracea HOM05D005188 ORTHO05D006153 6.2e-35 150.2 71 97.2
BolC2t07163H Brassica oleracea HOM05D005188 ORTHO05D006153 5.8e-33 143.7 74 91.9
Aa31LG1G17870 Aethionema arabicum HOM05D005188 ORTHO05D006153 1.2e-30 136.0 74 87.8
CARHR277950 Cardamine hirsuta HOM05D005188 ORTHO05D006153 1.2e-30 136.0 74 87.8
AT5G64040 Arabidopsis thaliana HOM05D005188 ORTHO05D006153 2.1e-30 135.2 74 86.5
Carub.0008s2482 Capsella rubella HOM05D005188 ORTHO05D006153 2.1e-30 135.2 74 86.5
Oeu050119.1 Olea europaea HOM05D005188 ORTHO05D006153 2.7e-30 134.8 74 87.8
Sp2g27110 Schrenkiella parvula HOM05D005188 ORTHO05D006153 2.7e-30 134.8 74 86.5
AL8G41300 Arabidopsis lyrata HOM05D005188 ORTHO05D006153 3.5e-30 134.4 74 86.5
BcaB02g09793 Brassica carinata HOM05D005188 ORTHO05D006153 3.5e-30 134.4 74 86.5
BcaB07g29717 Brassica carinata HOM05D005188 ORTHO05D006153 3.5e-30 134.4 74 86.5
BcaC01g02658 Brassica carinata HOM05D005188 ORTHO05D006153 3.5e-30 134.4 74 86.5
BcaC01g02659 Brassica carinata HOM05D005188 ORTHO05D006153 3.5e-30 134.4 74 86.5
BcaC03g18240 Brassica carinata HOM05D005188 ORTHO05D006153 3.5e-30 134.4 74 86.5
A06p30750 Brassica napus HOM05D005188 ORTHO05D006153 3.5e-30 134.4 74 86.5
C02p63110 Brassica napus HOM05D005188 ORTHO05D006153 3.5e-30 134.4 74 86.5
C09p09640 Brassica napus HOM05D005188 ORTHO05D006153 3.5e-30 134.4 74 86.5
BolC2t12383H Brassica oleracea HOM05D005188 ORTHO05D006153 3.5e-30 134.4 74 86.5
Thhalv10005005m.g Eutrema salsugineum HOM05D005188 ORTHO05D006153 3.5e-30 134.4 74 86.5
Sabra07G0086700 Salix brachista HOM05D005188 ORTHO05D006153 4.6e-30 134.0 74 85.1
TWI75G0084 Tripterygium wilfordii HOM05D005188 ORTHO05D006153 4.6e-30 134.0 74 86.5
COL.COLO4_35748 Corchorus olitorius HOM05D005188 ORTHO05D006153 6.0e-30 133.7 74 85.1
Potri.005G063300 Populus trichocarpa HOM05D005188 ORTHO05D006153 6.0e-30 133.7 74 85.1
Potri.007G105900 Populus trichocarpa HOM05D005188 ORTHO05D006153 6.0e-30 133.7 74 85.1
Aqoxy5G02315 Aquilegia oxysepala HOM05D005188 ORTHO05D006153 1.0e-29 132.9 74 83.8
MD01G1004300 Malus domestica HOM05D005188 ORTHO05D006153 1.0e-29 132.9 74 83.8
EL10Ac6g15302 Beta vulgaris HOM05D005188 ORTHO05D006153 1.3e-29 132.5 74 83.8
CANSAT01G0911 Cannabis sativa HOM05D005188 ORTHO05D006153 1.3e-29 132.5 74 83.8
Gohir.A05G384500 Gossypium hirsutum HOM05D005188 ORTHO05D006153 1.3e-29 132.5 74 83.8
Gorai.012G035200 Gossypium raimondii HOM05D005188 ORTHO05D006153 1.3e-29 132.5 74 83.8
Manes.12G156000 Manihot esculenta HOM05D005188 ORTHO05D006153 1.3e-29 132.5 74 83.8
Oeu037826.1 Olea europaea HOM05D005188 ORTHO05D006153 1.3e-29 132.5 74 85.1
Sabra05G0052500 Salix brachista HOM05D005188 ORTHO05D006153 1.3e-29 132.5 74 83.8
SalBow1G2748 Salvia bowleyana HOM05D005188 ORTHO05D006153 1.3e-29 132.5 74 83.8
Solyc08g013670.3 Solanum lycopersicum HOM05D005188 ORTHO05D006153 1.3e-29 132.5 74 83.8
Sopen08g004510 Solanum pennellii HOM05D005188 ORTHO05D006153 1.3e-29 132.5 74 83.8
PGSC0003DMG400005805 Solanum tuberosum HOM05D005188 ORTHO05D006153 1.3e-29 132.5 74 83.8
SGA_v2.0_scaffold370G50114 Striga asiatica HOM05D005188 ORTHO05D006153 1.3e-29 132.5 74 83.8
Haze_25240 Corylus avellana HOM05D005188 ORTHO05D006153 2.3e-29 131.7 74 83.8
FvH4_1g24360 Fragaria vesca HOM05D005188 ORTHO05D006153 2.3e-29 131.7 74 82.4
FAN19G1208 Fragaria x ananassa HOM05D005188 ORTHO05D006153 2.3e-29 131.7 74 82.4
Lj1g0024625 Lotus japonicus HOM05D005188 ORTHO05D006153 2.3e-29 131.7 74 83.8
Lalb_Chr13g0296451 Lupinus albus HOM05D005188 ORTHO05D006153 2.3e-29 131.7 74 83.8
MD15G1441800 Malus domestica HOM05D005188 ORTHO05D006153 2.3e-29 131.7 74 82.4
Prupe.4G271200 Prunus persica HOM05D005188 ORTHO05D006153 2.3e-29 131.7 74 83.8
TPR.G18740 Trifolium pratense HOM05D005188 ORTHO05D006153 2.3e-29 131.7 74 83.8
Gohir.A11G226800 Gossypium hirsutum HOM05D005188 ORTHO05D006153 3.0e-29 131.3 74 82.4
Gohir.D11G230800 Gossypium hirsutum HOM05D005188 ORTHO05D006153 3.0e-29 131.3 74 82.4
MBI06_g27435_MAGBIO Magnolia biondii HOM05D005188 ORTHO05D006153 3.0e-29 131.3 74 82.4
MBI06_g39404_MAGBIO Magnolia biondii HOM05D005188 ORTHO05D006153 3.0e-29 131.3 74 82.4
Peaxi162Scf01257g00019 Petunia axillaris HOM05D005188 ORTHO05D006153 3.0e-29 131.3 74 83.8
TWI79G1553 Tripterygium wilfordii HOM05D005188 ORTHO05D006153 3.0e-29 131.3 74 83.8
Atru.chr4.905 Acer truncatum HOM05D005188 ORTHO05D006153 3.9e-29 131.0 74 81.1
FAN28G1395 Fragaria x ananassa HOM05D002517 ORTHO05D003040 3.9e-29 131.0 74 81.1
Cfa002897 Carpinus fangiana HOM05D005188 ORTHO05D006153 5.1e-29 130.6 74 82.4
Ca_16917_v3 Cicer arietinum L. HOM05D005188 ORTHO05D006153 5.1e-29 130.6 74 82.4
Medtr3g095540 Medicago truncatula HOM05D005188 ORTHO05D006153 5.1e-29 130.6 74 82.4
Sed0010246 Sechium edule HOM05D005188 ORTHO05D006153 5.1e-29 130.6 74 82.4
Sed0019160 Sechium edule HOM05D005188 ORTHO05D006153 5.1e-29 130.6 74 82.4
Hund23270 Selenicereus undatus HOM05D005188 ORTHO05D006153 5.1e-29 130.6 74 82.4
BolC9t53875H Brassica oleracea HOM05D005188 ORTHO05D006153 6.6e-29 130.2 85 75.3
CiPaw.04G081900 Carya illinoinensis HOM05D005188 ORTHO05D006153 6.6e-29 130.2 74 82.4
Psat5g063680 Pisum sativum HOM05D005188 ORTHO05D006153 6.6e-29 130.2 74 82.4
THA.LOC104800083 Tarenaya hassleriana HOM05D005188 ORTHO05D006153 6.6e-29 130.2 74 82.4
Thecc.01G132900 Theobroma cacao HOM05D005188 ORTHO05D006153 6.6e-29 130.2 73 82.2
TAR381G0300 Trochodendron aralioides HOM05D005188 ORTHO05D006153 6.6e-29 130.2 74 82.4
arahy.Tifrunner.gnm1.ann1.DJM1RY Arachis hypogaea HOM05D005188 ORTHO05D006153 8.7e-29 129.8 74 81.1
arahy.Tifrunner.gnm1.ann1.V5WWJ8 Arachis hypogaea HOM05D005188 ORTHO05D006153 8.7e-29 129.8 74 81.1
CiPaw.03G121400 Carya illinoinensis HOM05D005188 ORTHO05D006153 8.7e-29 129.8 74 81.1
Migut.H00702 Erythranthe guttata HOM05D005188 ORTHO05D006153 8.7e-29 129.8 74 81.1
Hma1.2p1_0476F.1_g160790 Hydrangea macrophylla HOM05D005188 ORTHO05D006153 8.7e-29 129.8 74 82.4
CAN.G792.16 Capsicum annuum HOM05D005188 ORTHO05D006153 1.1e-28 129.4 74 81.1
ClCG01G015380 Citrullus lanatus HOM05D005188 ORTHO05D006153 1.1e-28 129.4 74 81.1
Gorai.003G066700 Gossypium raimondii HOM05D005188 ORTHO05D006153 1.1e-28 129.4 72 83.3
QL02p001672 Quercus lobata HOM05D005188 ORTHO05D006153 1.1e-28 129.4 73 82.2
Cpa.g.sc3.345 Carica papaya HOM05D005188 ORTHO05D006153 1.5e-28 129.0 74 79.7
MBI03_g42548_MAGBIO Magnolia biondii HOM05D005188 ORTHO05D006153 1.5e-28 129.0 74 81.1
CDE08G0648 Ceratophyllum demersum HOM05D005188 ORTHO05D006153 1.9e-28 128.6 74 79.7
Ciclev10002687m.g Citrus clementina HOM05D005188 ORTHO05D006153 1.9e-28 128.6 74 81.1
Glyma.04G215800 Glycine max HOM05D005188 ORTHO05D006153 1.9e-28 128.6 74 79.7
Glyma.06G150300 Glycine max HOM05D005188 ORTHO05D006153 1.9e-28 128.6 74 79.7
Lj4g0001203 Lotus japonicus HOM05D005188 ORTHO05D006153 1.9e-28 128.6 74 81.1
MELO3C008060.2 Cucumis melo HOM05D005188 ORTHO05D006153 2.5e-28 128.3 74 79.7
CsaV3_6G041600 Cucumis sativus L. HOM05D005188 ORTHO05D006153 2.5e-28 128.3 74 79.7
Phvul.002G269400 Phaseolus vulgaris HOM05D005188 ORTHO05D006153 2.5e-28 128.3 74 79.7
RcHm_v2.0_Chr2g0120891 Rosa chinensis HOM05D005188 ORTHO05D006153 2.5e-28 128.3 74 79.7
GSVIVG01026478001 Vitis vinifera HOM05D005188 ORTHO05D006153 2.5e-28 128.3 74 79.7
Ah.02g121530 Amaranthus hybridus HOM05D005188 ORTHO05D006153 3.3e-28 127.9 74 78.4
PGR008G0006 Punica granatum HOM05D005188 ORTHO05D006153 3.3e-28 127.9 74 79.7
PGR119G0239 Punica granatum HOM05D005188 ORTHO05D006153 3.3e-28 127.9 74 79.7
AUR62017881 Chenopodium quinoa HOM05D005188 ORTHO05D006153 5.6e-28 127.1 74 79.7
VMungo0251G2948 Vigna mungo HOM05D005188 ORTHO05D006153 5.6e-28 127.1 74 78.4
MSTRG.2649 Avicennia marina HOM05D005188 ORTHO05D006153 7.3e-28 126.7 73 79.5
ATR0987G005 Amborella trichopoda HOM05D005188 ORTHO05D006153 2.1e-27 125.2 75 74.7
CDE02G4401 Ceratophyllum demersum HOM05D005188 ORTHO05D006153 2.1e-27 125.2 72 79.2
Dinv24366 Davidia involucrata HOM05D005188 ORTHO05D006153 2.1e-27 125.2 74 75.7
Nn2g12180 Nelumbo nucifera HOM05D005188 ORTHO05D006153 2.1e-27 125.2 72 80.6
PSO541G2775 Papaver somniferum HOM05D005188 ORTHO05D006153 2.1e-27 125.2 75 74.7
PSO675G9377 Papaver somniferum HOM05D005188 ORTHO05D006153 2.1e-27 125.2 75 74.7
unitig_899.g14682 Utricularia gibba HOM05D005188 ORTHO05D006153 3.6e-27 124.4 74 78.4
Os12g0189400 Oryza sativa ssp. japonica HOM05D005188 ORTHO05D006153 4.8e-27 124.0 74 77.0
Rhsim10G0133700 Rhododendron simsii HOM05D005188 ORTHO05D006153 6.2e-27 123.6 74 78.4
DCAR_001211 Daucus carota HOM05D005188 ORTHO05D006153 8.1e-27 123.2 74 78.4
FAN26G2437 Fragaria x ananassa HOM05D002517 ORTHO05D006153 1.4e-26 122.5 74 79.7
Zm00001eb138650 Zea mays HOM05D005188 ORTHO05D006153 1.4e-26 122.5 74 75.7
HanXRQChr04g0107551 Helianthus annuus HOM05D005188 ORTHO05D006153 1.8e-26 122.1 74 77.0
Actinidia06616 Actinidia chinensis HOM05D005188 ORTHO05D006153 2.4e-26 121.7 74 77.0
CSS0010064 Camellia sinensis var. sinensis HOM05D005188 ORTHO05D006153 2.4e-26 121.7 74 77.0
CSS0045275 Camellia sinensis var. sinensis HOM05D005188 ORTHO05D006153 2.4e-26 121.7 74 77.0
Lsat_1_v5_gn_1_10061 Lactuca sativa HOM05D005188 ORTHO05D006153 4.0e-26 120.9 74 75.7
Lj2A607T35 Lonicera japonica HOM05D005188 ORTHO05D006153 4.0e-26 120.9 74 75.7
HPP92_019391 Vanilla planifolia HOM05D005188 ORTHO05D006153 4.0e-26 120.9 74 75.7
Cc10_g12590 Coffea canephora HOM05D005188 ORTHO05D006153 6.9e-26 120.2 74 73.0
Nitab4.5_0000673g0170 Nicotiana tabacum HOM05D005188 ORTHO05D006153 6.9e-26 120.2 67 83.6
vmacro12795 Vaccinium macrocarpon HOM05D005188 ORTHO05D006153 9.0e-26 119.8 74 75.7
Zm00001eb409220 Zea mays HOM05D005188 ORTHO05D006153 2.0e-25 118.6 74 71.6
BcaC03g13890 Brassica carinata HOM05D005188 ORTHO05D006153 4.4e-25 117.5 74 77.0
ECA247G1960 Erigeron canadensis HOM05D005188 ORTHO05D006153 5.8e-25 117.1 72 75.0
BolC3t18491H Brassica oleracea HOM05D005188 ORTHO05D006153 9.9e-25 116.3 78 74.4
SMO144G0055 Selaginella moellendorffii HOM05D005188 ORTHO05D006153 1.1e-23 112.8 73 69.9
A09p08510 Brassica napus HOM05D005188 ORTHO05D006153 1.9e-23 112.1 73 75.3
BraA09t36500Z Brassica rapa HOM05D005188 ORTHO05D006153 1.9e-23 112.1 73 75.3
SEGI_16120 Sequoiadendron giganteum HOM05D005188 ORTHO05D006153 6.0e-22 107.1 72 66.7
BcaB04g17222 Brassica carinata HOM05D005188 ORTHO05D006153 9.9e-17 89.7 79 59.5
Mapoly0116s0042 Marchantia polymorpha HOM05D005188 ORTHO05D006153 5.4e-15 84.0 68 60.3
C03p62290 Brassica napus HOM05D005188 ORTHO05D006153 1.6e-14 82.4 44 88.6
BraA06t26017Z Brassica rapa HOM05D005188 ORTHO05D006153 1.6e-14 82.4 44 88.6
Eucgr.I00200 Eucalyptus grandis HOM05D005188 ORTHO05D006153 1.6e-14 82.4 47 78.7
Sc16g0003820 Simmondsia chinensis HOM05D005188 ORTHO05D006153 4.6e-14 80.9 45 82.2
Duzib147G0711 Durio zibethinus HOM05D005188 ORTHO05D006153 7.9e-14 80.1 44 84.1
Duzib264G0557 Durio zibethinus HOM05D005188 ORTHO05D006153 7.9e-14 80.1 44 84.1
AagrBONN_evm.TU.Sc2ySwM_362.2803 Anthoceros agrestis HOM05D005188 ORTHO05D006153 1.6e-11 72.4 47 74.5
Cre02.g082500 Chlamydomonas reinhardtii HOM05D005188 ORTHO05D006153 2.1e-11 72.0 67 53.7
C02p10930 Brassica napus HOM05D005188 ORTHO05D006153 8.1e-11 70.1 34 88.2
AUR62003566 Chenopodium quinoa HOM05D005188 ORTHO05D006153 1.3e-08 62.8 33 78.8
CBR_g45633 Chara braunii HOM05D005188 ORTHO05D006153 1.7e-08 62.4 45 64.4
PRCOL_00004565 Prasinoderma coloniale HOM05D005188 ORTHO05D006153 2.2e-08 62.0 59 54.2
MCO09G058 Micromonas commoda HOM05D005188 ORTHO05D006153 3.2e-07 58.2 68 47.1


User provided reference genes

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