Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
BcaC04g18782 Brassica carinata HOM05D004645 ORTHO05D005693 2.0e-163 579.3 367 100.0
BolC9t58802H Brassica oleracea HOM05D004645 ORTHO05D005693 1.9e-161 572.8 367 99.5
C09p59630 Brassica napus HOM05D004645 ORTHO05D005693 3.1e-159 565.5 369 98.4
BraA10t44247Z Brassica rapa HOM05D004645 ORTHO05D005693 1.7e-157 559.7 372 97.6
A10p21880 Brassica napus HOM05D004645 ORTHO05D005693 1.1e-156 557.0 371 97.6
BcaB08g36765 Brassica carinata HOM05D004645 ORTHO05D005693 4.1e-156 555.1 372 97.0
AT5G17510 Arabidopsis thaliana HOM05D004645 ORTHO05D005693 2.1e-147 526.2 319 94.7
Sp6g26710 Schrenkiella parvula HOM05D004645 ORTHO05D005693 3.6e-144 515.4 326 92.6
Carub.0006s1574 Capsella rubella HOM05D004645 ORTHO05D005693 8.1e-144 514.2 323 92.9
AL6G28600 Arabidopsis lyrata HOM05D004645 ORTHO05D005693 2.4e-143 512.7 319 93.4
Thhalv10013879m.g Eutrema salsugineum HOM05D004645 ORTHO05D005693 3.0e-138 495.7 368 91.0
Aa31LG11G12160 Aethionema arabicum HOM05D004645 ORTHO05D005693 1.1e-137 493.8 326 88.3
THA.LOC104820831 Tarenaya hassleriana HOM05D004645 ORTHO05D005693 4.9e-133 478.4 327 83.5
CARHR195680 Cardamine hirsuta HOM05D004645 ORTHO05D005693 1.9e-124 449.9 322 85.4
THA.LOC104802906 Tarenaya hassleriana HOM05D004645 ORTHO05D005693 9.6e-121 437.6 329 75.4
Thecc.05G223300 Theobroma cacao HOM05D004645 ORTHO05D005693 5.0e-109 398.7 328 75.6
Gohir.D03G055700 Gossypium hirsutum HOM05D004645 ORTHO05D005693 2.3e-106 389.8 333 73.3
Gohir.A02G114700 Gossypium hirsutum HOM05D004645 ORTHO05D005693 5.1e-106 388.7 332 72.6
Gorai.003G058500 Gossypium raimondii HOM05D004645 ORTHO05D005693 5.1e-106 388.7 336 72.6
Duzib177G0889 Durio zibethinus HOM05D004645 ORTHO05D005693 1.5e-105 387.1 347 70.9
Lj1g0014871 Lotus japonicus HOM05D004645 ORTHO05D005693 3.3e-105 386.0 323 73.4
Manes.09G130100 Manihot esculenta HOM05D004645 ORTHO05D005693 1.2e-102 377.5 327 70.6
VMungo1127G1262 Vigna mungo HOM05D004645 ORTHO05D005693 1.2e-102 377.5 338 68.0
CSS0046309 Camellia sinensis var. sinensis HOM05D004645 ORTHO05D005693 1.5e-102 377.1 325 72.6
Ciclev10031859m.g Citrus clementina HOM05D004645 ORTHO05D005693 7.7e-102 374.8 327 71.3
CiPaw.05G212200 Carya illinoinensis HOM05D004645 ORTHO05D005693 1.7e-101 373.6 322 69.6
CiPaw.06G036400 Carya illinoinensis HOM05D004645 ORTHO05D005693 1.7e-101 373.6 329 70.2
GSVIVG01024286001 Vitis vinifera HOM05D004645 ORTHO05D005693 1.7e-101 373.6 252 77.4
Glyma.12G014000 Glycine max HOM05D004645 ORTHO05D005693 2.2e-101 373.2 338 66.6
Manes.08G160200 Manihot esculenta HOM05D004645 ORTHO05D005693 2.9e-101 372.9 323 69.3
Glyma.09G223000 Glycine max HOM05D004645 ORTHO05D005693 3.8e-101 372.5 329 68.7
Gohir.A13G158000 Gossypium hirsutum HOM05D004645 ORTHO05D005693 3.8e-101 372.5 330 73.0
Actinidia33801 Actinidia chinensis HOM05D004645 ORTHO05D005693 5.0e-101 372.1 332 72.6
CANSAT21G0324 Cannabis sativa HOM05D004645 ORTHO05D005693 1.1e-100 370.9 322 71.4
Hma1.2p1_0419F.1_g149550 Hydrangea macrophylla HOM05D004645 ORTHO05D005693 5.5e-100 368.6 247 78.5
Dinv01810 Davidia involucrata HOM05D004645 ORTHO05D005693 9.4e-100 367.9 337 70.0
Medtr0004s0240 Medicago truncatula HOM05D004645 ORTHO05D005693 9.4e-100 367.9 324 72.2
Potri.013G076800 Populus trichocarpa HOM05D004645 ORTHO05D005693 1.2e-99 367.5 324 66.4
Atru.chr12.1851 Acer truncatum HOM05D004645 ORTHO05D005693 2.1e-99 366.7 326 71.2
CSS0029852 Camellia sinensis var. sinensis HOM05D004645 ORTHO05D005693 2.1e-99 366.7 332 71.1
MD01G1239600 Malus domestica HOM05D004645 ORTHO05D005693 2.7e-99 366.3 321 70.4
Phvul.011G016900 Phaseolus vulgaris HOM05D004645 ORTHO05D005693 3.6e-99 365.9 336 65.5
TWI60G0474 Tripterygium wilfordii HOM05D004645 ORTHO05D005693 4.6e-99 365.5 343 65.9
Gohir.D13G162500 Gossypium hirsutum HOM05D004645 ORTHO05D005693 5.1e-98 362.1 326 72.1
Hund09812 Selenicereus undatus HOM05D004645 ORTHO05D005693 5.1e-98 362.1 247 77.3
Duzib128G1942 Durio zibethinus HOM05D004645 ORTHO05D005693 1.5e-97 360.5 333 69.1
arahy.Tifrunner.gnm1.ann1.3IB4NC Arachis hypogaea HOM05D004645 ORTHO05D005693 2.0e-97 360.1 346 68.2
arahy.Tifrunner.gnm1.ann1.7F5N7U Arachis hypogaea HOM05D004645 ORTHO05D005693 2.0e-97 360.1 346 68.2
Thhalv10020936m.g Eutrema salsugineum HOM05D004645 ORTHO05D005693 1.7e-96 357.1 354 68.4
RcHm_v2.0_Chr1g0384691 Rosa chinensis HOM05D004645 ORTHO05D005693 1.7e-96 357.1 333 67.0
Prupe.2G329500 Prunus persica HOM05D004645 ORTHO05D005693 6.3e-96 355.1 329 69.0
Lj5g0009502 Lotus japonicus HOM05D004645 ORTHO05D005693 3.1e-95 352.8 321 70.7
Potri.019G042800 Populus trichocarpa HOM05D004645 ORTHO05D005693 4.1e-95 352.4 369 64.2
PGR119G0624 Punica granatum HOM05D004645 ORTHO05D005693 5.3e-95 352.1 322 69.9
TAR629G2315 Trochodendron aralioides HOM05D004645 ORTHO05D005693 1.0e-93 347.8 326 69.3
Nitab4.5_0009278g0030 Nicotiana tabacum HOM05D004645 ORTHO05D005693 1.3e-93 347.4 328 59.5
Solyc03g097300.4 Solanum lycopersicum HOM05D004645 ORTHO05D005693 2.2e-93 346.7 326 63.2
Sopen03g028070 Solanum pennellii HOM05D004645 ORTHO05D005693 2.2e-93 346.7 326 63.2
FAN10G3994 Fragaria x ananassa HOM05D004645 ORTHO05D005693 3.8e-93 345.9 326 65.0
FvH4_7g34300 Fragaria vesca HOM05D004645 ORTHO05D005693 8.5e-93 344.7 326 65.6
AL3G13140 Arabidopsis lyrata HOM05D004645 ORTHO05D005693 1.1e-92 344.4 329 68.1
Oeu028988.1 Olea europaea HOM05D004645 ORTHO05D005693 5.5e-92 342.0 321 64.5
Gorai.013G184600 Gossypium raimondii HOM05D004645 ORTHO05D005693 9.4e-92 341.3 328 69.5
HanXRQChr11g0333681 Helianthus annuus HOM05D004645 ORTHO05D005693 4.7e-91 339.0 322 62.4
HanXRQChr14g0434641 Helianthus annuus HOM05D004645 ORTHO05D005693 1.4e-90 337.4 318 61.6
Lalb_Chr03g0037841 Lupinus albus HOM05D004645 ORTHO05D005693 2.3e-90 336.7 322 67.7
TWI32G1082 Tripterygium wilfordii HOM05D004645 ORTHO05D005693 2.3e-90 336.7 322 67.4
CAN.G732.33 Capsicum annuum HOM05D004645 ORTHO05D005693 3.9e-90 335.9 325 61.8
PGSC0003DMG400026490 Solanum tuberosum HOM05D004645 ORTHO05D005693 3.9e-90 335.9 335 61.8
Peaxi162Scf00516g00425 Petunia axillaris HOM05D004645 ORTHO05D005693 5.2e-90 335.5 323 67.2
Sed0013778 Sechium edule HOM05D004645 ORTHO05D005693 5.2e-90 335.5 325 66.5
Lsat_1_v5_gn_8_3080 Lactuca sativa HOM05D004645 ORTHO05D005693 6.7e-90 335.1 319 63.6
Nitab4.5_0000021g0850 Nicotiana tabacum HOM05D004645 ORTHO05D005693 1.5e-89 334.0 248 71.0
Carub.0003s0260 Capsella rubella HOM05D004645 ORTHO05D005693 4.4e-89 332.4 342 64.9
MSTRG.26920 Avicennia marina HOM05D004645 ORTHO05D005693 5.7e-89 332.0 332 59.3
ECA238G1292 Erigeron canadensis HOM05D004645 ORTHO05D005693 9.7e-89 331.3 246 72.4
Aa31LG5G13980 Aethionema arabicum HOM05D000507 ORTHO05D000416 2.2e-88 330.1 256 70.7
Cc02_g00050 Coffea canephora HOM05D004645 ORTHO05D005693 4.8e-88 328.9 333 62.2
TAR633G2534 Trochodendron aralioides HOM05D004645 ORTHO05D005693 4.8e-88 328.9 241 73.9
Lalb_Chr19g0140101 Lupinus albus HOM05D004645 ORTHO05D005693 1.1e-87 327.8 321 60.1
Lj3C883G6 Lonicera japonica HOM05D000507 ORTHO05D000416 1.8e-87 327.0 248 74.6
FAN03G2055 Fragaria x ananassa HOM05D004645 ORTHO05D005693 7.0e-87 325.1 352 62.5
Sp3g02460 Schrenkiella parvula HOM05D004645 ORTHO05D005693 9.1e-87 324.7 336 66.4
ClCG09G013170 Citrullus lanatus HOM05D004645 ORTHO05D005693 3.5e-86 322.8 325 64.9
Sabra19G0053400 Salix brachista HOM05D004645 ORTHO05D005693 1.0e-85 321.2 286 64.0
MELO3C014340.2 Cucumis melo HOM05D004645 ORTHO05D005693 3.8e-85 319.3 326 65.6
PSO063G6220 Papaver somniferum HOM05D004645 ORTHO05D005693 3.8e-85 319.3 323 64.7
COL.COLO4_15124 Corchorus olitorius HOM05D004645 ORTHO05D005693 5.0e-85 318.9 216 79.6
AT3G03460 Arabidopsis thaliana HOM05D004645 ORTHO05D005693 8.5e-85 318.2 333 66.1
Oeu027899.1 Olea europaea HOM05D004645 ORTHO05D005693 1.5e-84 317.4 333 60.4
PSO782G2658 Papaver somniferum HOM05D004645 ORTHO05D005693 1.9e-84 317.0 323 64.1
TPR.G9835 Trifolium pratense HOM05D004645 ORTHO05D005693 3.2e-84 316.2 325 65.8
CsaV3_6G036830 Cucumis sativus L. HOM05D004645 ORTHO05D005693 5.2e-82 308.9 252 68.7
Migut.L00703 Erythranthe guttata HOM05D004645 ORTHO05D005693 3.3e-81 306.2 341 58.4
Aqoxy5G00549 Aquilegia oxysepala HOM05D004645 ORTHO05D005693 5.7e-81 305.4 332 61.1
Haze_00365 Corylus avellana HOM05D004645 ORTHO05D005693 7.0e-79 298.5 211 76.8
BNapus_Darmor_BZH_scaffold_162p00170 Brassica napus HOM05D004645 ORTHO05D005693 9.1e-79 298.1 326 64.7
BolC1t05829H Brassica oleracea HOM05D004645 ORTHO05D005693 9.1e-79 298.1 326 64.7
AUR62028214 Chenopodium quinoa HOM05D004645 ORTHO05D005693 2.0e-78 297.0 245 65.7
unitig_92.g28227 Utricularia gibba HOM05D004645 ORTHO05D005693 7.7e-78 295.0 237 66.7
QL09p020526 Quercus lobata HOM05D004645 ORTHO05D005693 1.5e-76 290.8 210 76.2
EL10Ac3g05041 Beta vulgaris HOM05D004645 ORTHO05D005693 1.2e-75 287.7 405 50.6
HanXRQChr05g0156891 Helianthus annuus HOM05D004645 ORTHO05D005693 2.1e-75 287.0 240 68.3
CDE04G1041 Ceratophyllum demersum HOM05D004645 ORTHO05D005693 1.8e-74 283.9 325 54.5
SHI15009 Sapria himalayana HOM05D004645 ORTHO05D005693 2.3e-74 283.5 329 56.8
vmacro06368 Vaccinium macrocarpon HOM05D004645 ORTHO05D005693 2.3e-74 283.5 226 72.6
AUR62002096 Chenopodium quinoa HOM05D004645 ORTHO05D005693 5.2e-74 282.3 236 65.3
ECA233G1188 Erigeron canadensis HOM05D004645 ORTHO05D005693 5.2e-74 282.3 237 65.8
SGA_v2.0_scaffold18G08211 Striga asiatica HOM05D004645 ORTHO05D005693 6.8e-74 282.0 337 56.4
A06p26400 Brassica napus HOM05D004645 ORTHO05D005693 1.2e-73 281.2 328 62.8
BNapus_Darmor_BZH_scaffold_78p00150 Brassica napus HOM05D004645 ORTHO05D005693 1.2e-73 281.2 328 62.8
Ca_19601_v3 Cicer arietinum L. HOM05D004645 ORTHO05D005693 1.2e-73 281.2 218 72.0
BraA01t04578Z Brassica rapa HOM05D004645 ORTHO05D005693 2.6e-73 280.0 328 62.8
DCAR_010525 Daucus carota HOM05D004645 ORTHO05D005693 6.3e-72 275.4 227 68.7
Os12g0465700 Oryza sativa ssp. japonica HOM05D004645 ORTHO05D005693 2.0e-70 270.4 326 53.1
DCAR_014580 Daucus carota HOM05D004645 ORTHO05D005693 5.0e-69 265.8 334 50.9
Ah.04g156130 Amaranthus hybridus HOM05D004645 ORTHO05D005693 8.6e-69 265.0 334 54.2
Sc08g0005180 Simmondsia chinensis HOM05D004645 ORTHO05D005693 1.5e-68 264.2 213 74.6
Lj3g0007707 Lotus japonicus HOM05D004645 ORTHO05D005693 2.1e-67 260.4 205 71.2
BcaC09g47748 Brassica carinata HOM05D004645 ORTHO05D005693 2.8e-67 260.0 320 59.1
Cfa016080 Carpinus fangiana HOM05D004645 ORTHO05D005693 1.7e-64 250.8 183 74.9
ATR0582G008 Amborella trichopoda HOM05D004645 ORTHO05D005693 2.2e-64 250.4 322 50.9
Rhsim03G0224700 Rhododendron simsii HOM05D004645 ORTHO05D005693 2.2e-64 250.4 337 58.2
HPP92_006448 Vanilla planifolia HOM05D004645 ORTHO05D005693 2.3e-61 240.4 330 57.6
SEGI_39287 Sequoiadendron giganteum HOM05D004645 ORTHO05D005693 1.7e-48 197.6 263 46.8
HPP92_027983 Vanilla planifolia HOM05D004645 ORTHO05D005693 3.7e-48 196.4 210 63.3
CARHR077490 Cardamine hirsuta HOM05D004645 ORTHO05D005693 4.1e-47 193.0 220 59.1
Psat7g154680 Pisum sativum HOM05D004645 ORTHO05D005693 1.3e-37 161.4 159 59.7
FAN01G0394 Fragaria x ananassa HOM05D004645 ORTHO05D005693 3.0e-37 160.2 102 84.3
TAR636G0353 Trochodendron aralioides HOM05D004645 ORTHO05D005693 1.5e-36 157.9 131 69.5
AagrBONN_evm.TU.Sc2ySwM_228.1766 Anthoceros agrestis HOM05D004645 ORTHO05D005693 6.2e-27 125.9 156 46.2
Mapoly0012s0180 Marchantia polymorpha HOM05D004645 ORTHO05D005693 8.1e-27 125.6 148 43.2
Pp3c11_2710 Physcomitrium patens HOM05D004645 ORTHO05D005693 1.5e-25 121.3 136 45.6
HPP92_028759 Vanilla planifolia HOM05D004645 ORTHO05D005693 1.3e-24 118.2 213 46.0
Os04g0393100 Oryza sativa ssp. japonica HOM05D004645 ORTHO05D005693 3.5e-22 110.2 121 46.3
CBR_g4003 Chara braunii HOM05D004645 ORTHO05D005693 1.9e-20 104.4 148 39.9
Os04g0393200 Oryza sativa ssp. japonica HOM05D004645 ORTHO05D005693 5.6e-20 102.8 119 45.4
Cpa.g.c34419 Carica papaya HOM05D004645 ORTHO05D005693 4.8e-19 99.8 125 64.8
Zm00001eb421230 Zea mays HOM05D004645 ORTHO05D005693 2.4e-18 97.4 130 39.2
Actinidia04560 Actinidia chinensis HOM05D004645 ORTHO05D005693 1.2e-17 95.1 112 63.4
Dinv17242 Davidia involucrata HOM05D004645 ORTHO05D005693 1.2e-17 95.1 115 67.0
Psat0s904g0040 Pisum sativum HOM05D004645 ORTHO05D005693 5.4e-15 86.3 117 47.9
AL3G45560 Arabidopsis lyrata HOM05D004645 ORTHO05D005693 2.7e-14 84.0 53 69.8
FAN01G2860 Fragaria x ananassa HOM05D004645 ORTHO05D005693 6.0e-14 82.8 112 57.1
Haze_00364 Corylus avellana HOM05D004645 ORTHO05D005693 3.0e-13 80.5 124 59.7
Sabra13G0065800 Salix brachista HOM05D004645 ORTHO05D005693 5.1e-13 79.7 104 53.8
QL09p020516 Quercus lobata HOM05D004645 ORTHO05D005693 1.3e-11 75.1 37 83.8
ECA075G0001 Erigeron canadensis HOM05D004645 ORTHO05D005693 5.8e-09 66.2 35 82.9
Oeu057736.1 Olea europaea HOM05D004645 ORTHO05D005693 4.6e-06 56.6 120 36.7


User provided reference genes

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