Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
BcaC04g18781 Brassica carinata HOM05D005356 ORTHO05D006596 6.8e-229 797.0 402 100.0
A10p21870 Brassica napus HOM05D005356 ORTHO05D006596 1.1e-221 773.1 402 97.3
C09p59620 Brassica napus HOM05D005356 ORTHO05D006596 1.8e-221 772.3 402 97.0
BolC9t58801H Brassica oleracea HOM05D005356 ORTHO05D006596 1.8e-221 772.3 402 97.0
BraA10t44246Z Brassica rapa HOM05D005356 ORTHO05D006596 7.1e-218 760.4 406 95.6
BcaB08g36764 Brassica carinata HOM05D005356 ORTHO05D006596 1.3e-214 749.6 401 94.5
A10p21860 Brassica napus HOM05D005356 ORTHO05D006596 4.6e-201 704.5 375 95.5
Sp6g26700 Schrenkiella parvula HOM05D005356 ORTHO05D006596 3.3e-199 698.4 411 84.7
AL6G28610 Arabidopsis lyrata HOM05D005356 ORTHO05D006596 1.8e-184 649.4 415 80.5
CARHR195670 Cardamine hirsuta HOM05D005356 ORTHO05D006596 4.3e-183 644.8 411 79.6
AT5G17520 Arabidopsis thaliana HOM05D005356 ORTHO05D006596 6.3e-182 641.0 417 78.7
A02p04240 Brassica napus HOM05D005356 ORTHO05D006596 4.1e-181 638.3 395 82.5
BraA02t05387Z Brassica rapa HOM05D005356 ORTHO05D006596 4.1e-181 638.3 395 82.5
BolC2t06824H Brassica oleracea HOM05D005356 ORTHO05D006596 1.5e-180 636.3 402 81.6
C02p09120 Brassica napus HOM05D005356 ORTHO05D006596 5.0e-179 631.3 401 81.5
BcaC03g13524 Brassica carinata HOM05D005356 ORTHO05D006596 4.1e-173 611.7 357 85.4
Aa31LG11G12150 Aethionema arabicum HOM05D005356 ORTHO05D006596 3.5e-172 608.6 408 77.7
THA.LOC104802905 Tarenaya hassleriana HOM05D005356 ORTHO05D006596 3.7e-166 588.6 411 72.5
THA.LOC104820830 Tarenaya hassleriana HOM05D005356 ORTHO05D006596 2.1e-161 572.8 414 69.6
Thecc.05G227000 Theobroma cacao HOM05D005356 ORTHO05D006596 5.7e-143 511.5 379 68.1
COL.COLO4_32921 Corchorus olitorius HOM05D005356 ORTHO05D006596 1.6e-140 503.4 393 65.4
Potri.013G076100 Populus trichocarpa HOM05D005356 ORTHO05D006596 3.0e-139 499.2 355 69.6
Gorai.007G246900 Gossypium raimondii HOM05D005356 ORTHO05D006596 3.9e-139 498.8 403 63.5
Ciclev10031697m.g Citrus clementina HOM05D005356 ORTHO05D006596 4.3e-138 495.4 411 62.5
Gohir.D11G234600 Gossypium hirsutum HOM05D005356 ORTHO05D006596 5.6e-138 495.0 403 63.0
Manes.08G159200 Manihot esculenta HOM05D005356 ORTHO05D006596 9.5e-138 494.2 401 62.1
Gorai.004G255200 Gossypium raimondii HOM05D005356 ORTHO05D006596 1.6e-137 493.4 350 69.4
Gohir.A11G226000 Gossypium hirsutum HOM05D005356 ORTHO05D006596 6.2e-137 491.5 351 68.4
Phvul.011G016500 Phaseolus vulgaris HOM05D005356 ORTHO05D006596 8.0e-137 491.1 330 71.8
Prupe.2G329800 Prunus persica HOM05D005356 ORTHO05D006596 1.8e-136 490.0 370 66.2
Gohir.A08G221634 Gossypium hirsutum HOM05D005356 ORTHO05D006596 2.3e-136 489.6 350 69.1
Medtr0172s0020 Medicago truncatula HOM05D005356 ORTHO05D006596 5.2e-136 488.4 324 71.6
Sabra13G0065300 Salix brachista HOM05D005356 ORTHO05D006596 5.2e-136 488.4 353 68.6
PGR119G0933 Punica granatum HOM05D005356 ORTHO05D006596 6.8e-136 488.0 325 74.5
PGR008G0003 Punica granatum HOM05D005356 ORTHO05D006596 2.0e-135 486.5 325 74.2
PGR131G0008 Punica granatum HOM05D005356 ORTHO05D006596 2.0e-135 486.5 325 74.2
Lj3g0010653 Lotus japonicus HOM05D005356 ORTHO05D006596 3.4e-135 485.7 329 69.6
FvH4_7g34281 Fragaria vesca HOM05D005356 ORTHO05D006596 5.8e-135 485.0 361 66.8
Atru.chr12.1818 Acer truncatum HOM05D005356 ORTHO05D006596 1.3e-134 483.8 404 60.9
Hund11857 Selenicereus undatus HOM05D005356 ORTHO05D006596 1.7e-134 483.4 351 68.4
RcHm_v2.0_Chr1g0384641 Rosa chinensis HOM05D005356 ORTHO05D006596 2.2e-134 483.0 353 67.1
arahy.Tifrunner.gnm1.ann1.RW14FX Arachis hypogaea HOM05D005356 ORTHO05D006596 2.9e-134 482.6 332 70.8
DCAR_009031 Daucus carota HOM05D005356 ORTHO05D006596 2.9e-134 482.6 346 67.1
Glyma.12G013400 Glycine max HOM05D005356 ORTHO05D006596 2.9e-134 482.6 333 71.5
Sed0019262 Sechium edule HOM05D005356 ORTHO05D006596 4.9e-134 481.9 348 67.5
arahy.Tifrunner.gnm1.ann1.509DQ1 Arachis hypogaea HOM05D005356 ORTHO05D006596 6.4e-134 481.5 329 71.1
MELO3C024754.2 Cucumis melo HOM05D005356 ORTHO05D006596 9.2e-133 477.6 347 68.6
CiPaw.05G210900 Carya illinoinensis HOM05D005356 ORTHO05D006596 2.7e-132 476.1 329 70.8
CiPaw.06G037000 Carya illinoinensis HOM05D005356 ORTHO05D006596 2.7e-132 476.1 332 70.5
TAR629G3426 Trochodendron aralioides HOM05D005356 ORTHO05D006596 3.5e-132 475.7 354 66.7
CsaV3_2G035860 Cucumis sativus L. HOM05D005356 ORTHO05D006596 4.6e-132 475.3 347 67.4
MD07G1311300 Malus domestica HOM05D005356 ORTHO05D006596 4.6e-132 475.3 316 72.5
Sabra19G0053800 Salix brachista HOM05D005356 ORTHO05D006596 4.6e-132 475.3 374 64.7
Sed0017544 Sechium edule HOM05D005356 ORTHO05D006596 6.0e-132 474.9 347 68.0
TAR375G1012 Trochodendron aralioides HOM05D005356 ORTHO05D006596 2.3e-131 473.0 344 68.0
TPR.G9827 Trifolium pratense HOM05D005356 ORTHO05D006596 3.9e-131 472.2 379 63.6
Hma1.2p1_0564F.1_g179310 Hydrangea macrophylla HOM05D005356 ORTHO05D006596 5.0e-131 471.9 318 72.0
GSVIVG01024263001 Vitis vinifera HOM05D005356 ORTHO05D006596 6.6e-131 471.5 346 66.5
Lalb_Chr01g0000721 Lupinus albus HOM05D005356 ORTHO05D006596 2.5e-130 469.5 328 68.0
Dinv17238 Davidia involucrata HOM05D005356 ORTHO05D006596 1.6e-129 466.8 317 71.6
Nn1g09227 Nelumbo nucifera HOM05D005356 ORTHO05D006596 1.6e-129 466.8 331 67.7
Hma1.2p1_0419F.1_g149580 Hydrangea macrophylla HOM05D005356 ORTHO05D006596 3.6e-129 465.7 335 67.5
Solyc04g064720.3 Solanum lycopersicum HOM05D005356 ORTHO05D006596 3.6e-129 465.7 346 64.2
Sopen04g026680 Solanum pennellii HOM05D005356 ORTHO05D006596 3.6e-129 465.7 346 64.2
PSO782G1515 Papaver somniferum HOM05D005356 ORTHO05D006596 4.7e-129 465.3 399 60.7
Psat0s2502g0200 Pisum sativum HOM05D005356 ORTHO05D006596 4.7e-129 465.3 319 68.3
CAN.G2009.1 Capsicum annuum HOM05D005356 ORTHO05D006596 8.1e-129 464.5 346 63.9
PGSC0003DMG400024812 Solanum tuberosum HOM05D005356 ORTHO05D006596 1.1e-128 464.2 346 63.9
Nitab4.5_0002990g0020 Nicotiana tabacum HOM05D005356 ORTHO05D006596 1.4e-128 463.8 382 59.4
Cc10_g12920 Coffea canephora HOM05D005356 ORTHO05D006596 1.8e-128 463.4 344 65.1
Nitab4.5_0000299g0040 Nicotiana tabacum HOM05D005356 ORTHO05D006596 2.3e-128 463.0 382 59.7
Os04g0602400 Oryza sativa ssp. japonica HOM05D005356 ORTHO05D006596 2.3e-128 463.0 341 66.9
Eucgr.A02993 Eucalyptus grandis HOM05D005356 ORTHO05D006596 4.0e-128 462.2 325 68.9
Peaxi162Scf00263g00323 Petunia axillaris HOM05D005356 ORTHO05D006596 4.0e-128 462.2 382 60.5
Nn3g19190 Nelumbo nucifera HOM05D005356 ORTHO05D006596 8.9e-128 461.1 356 63.8
EL10Ac3g05893 Beta vulgaris HOM05D005356 ORTHO05D006596 7.5e-127 458.0 316 69.3
VMungo0647G2360 Vigna mungo HOM05D005356 ORTHO05D006596 7.5e-127 458.0 313 71.2
ATR0369G003 Amborella trichopoda HOM05D005356 ORTHO05D006596 9.8e-127 457.6 318 68.2
CANSAT21G1742 Cannabis sativa HOM05D005356 ORTHO05D006596 3.7e-126 455.7 316 69.9
Carub.0006s1575 Capsella rubella HOM05D005356 ORTHO05D006596 3.7e-126 455.7 261 86.2
Aqoxy3G04210 Aquilegia oxysepala HOM05D005356 ORTHO05D006596 1.9e-125 453.4 325 68.3
Lsat_1_v5_gn_9_47941 Lactuca sativa HOM05D005356 ORTHO05D006596 2.4e-125 453.0 379 59.9
Migut.C01041 Erythranthe guttata HOM05D005356 ORTHO05D006596 9.2e-125 451.1 388 57.2
Aqoxy1G01762 Aquilegia oxysepala HOM05D005356 ORTHO05D006596 2.1e-124 449.9 314 68.2
ECA232G1465 Erigeron canadensis HOM05D005356 ORTHO05D006596 2.1e-124 449.9 315 67.6
FAN03G1362 Fragaria x ananassa HOM05D005356 ORTHO05D006596 2.3e-123 446.4 321 68.5
HanXRQChr05g0139001 Helianthus annuus HOM05D005356 ORTHO05D006596 3.3e-122 442.6 317 67.5
MSTRG.24194 Avicennia marina HOM05D005356 ORTHO05D006596 4.3e-122 442.2 324 66.0
SalBow7G2700 Salvia bowleyana HOM05D005356 ORTHO05D006596 5.6e-122 441.8 343 61.5
AUR62002252 Chenopodium quinoa HOM05D005356 ORTHO05D006596 7.3e-122 441.4 364 59.3
Oeu030531.2 Olea europaea HOM05D005356 ORTHO05D006596 7.3e-122 441.4 349 61.3
SalBow6G3313 Salvia bowleyana HOM05D005356 ORTHO05D006596 2.8e-121 439.5 329 63.8
Migut.N03237 Erythranthe guttata HOM05D005356 ORTHO05D006596 1.4e-120 437.2 322 64.9
Manes.09G130400 Manihot esculenta HOM05D005356 ORTHO05D006596 1.3e-118 430.6 406 55.9
AUR62015463 Chenopodium quinoa HOM05D005356 ORTHO05D006596 1.2e-116 424.1 376 56.4
MSTRG.22381 Avicennia marina HOM05D005356 ORTHO05D006596 8.6e-115 417.9 345 59.7
MD01G1240200 Malus domestica HOM05D005356 ORTHO05D006596 2.5e-114 416.4 316 65.8
unitig_744.g24563 Utricularia gibba HOM05D005356 ORTHO05D006596 2.8e-113 412.9 336 61.0
Oeu015013.2 Olea europaea HOM05D005356 ORTHO05D006596 1.8e-112 410.2 423 51.8
PSO063G2098 Papaver somniferum HOM05D005356 ORTHO05D006596 9.9e-111 404.4 346 61.3
Gohir.D08G239900 Gossypium hirsutum HOM05D005356 ORTHO05D006596 1.7e-110 403.7 270 72.2
Duzib177G1190 Durio zibethinus HOM05D005356 ORTHO05D006596 2.7e-108 396.4 331 63.4
Actinidia33804 Actinidia chinensis HOM05D005356 ORTHO05D006596 1.0e-107 394.4 355 58.3
Ca_19620_v3 Cicer arietinum L. HOM05D005356 ORTHO05D006596 1.3e-107 394.0 269 69.1
SGA_v2.0_scaffold19G08642 Striga asiatica HOM05D005356 ORTHO05D006596 9.6e-106 387.9 333 57.1
SEGI_37553 Sequoiadendron giganteum HOM05D005356 ORTHO05D006596 4.8e-105 385.6 316 59.8
Cpa.g.sc43.152 Carica papaya HOM05D005356 ORTHO05D006596 2.4e-104 383.3 282 67.4
Lj3A883T53 Lonicera japonica HOM05D005356 ORTHO05D006596 1.7e-102 377.1 311 62.1
Haze_00348 Corylus avellana HOM05D005356 ORTHO05D006596 4.2e-101 372.5 283 67.1
ClCG02G007870 Citrullus lanatus HOM05D005356 ORTHO05D006596 3.5e-100 369.4 299 61.5
Pp3c6_18710 Physcomitrium patens HOM05D005356 ORTHO05D006596 8.7e-99 364.8 352 52.3
Rhsim09G0214300 Rhododendron simsii HOM05D005356 ORTHO05D006596 1.1e-96 357.8 250 71.2
Mapoly0051s0014 Marchantia polymorpha HOM05D005356 ORTHO05D006596 2.1e-92 343.6 317 53.3
Pp3c24_890 Physcomitrium patens HOM05D005356 ORTHO05D006596 2.5e-90 336.7 322 53.1
SMO012G0030 Selaginella moellendorffii HOM05D005356 ORTHO05D006596 3.3e-90 336.3 360 50.0
AagrBONN_evm.TU.Sc2ySwM_228.477 Anthoceros agrestis HOM05D005356 ORTHO05D006596 1.3e-89 334.3 332 52.7
CDE11G1065 Ceratophyllum demersum HOM05D005356 ORTHO05D006596 4.8e-89 332.4 346 53.8
MBI04_g30781_MAGBIO Magnolia biondii HOM05D005356 ORTHO05D006596 1.1e-82 311.2 216 71.3
AT5G17523 Arabidopsis thaliana HOM05D005356 ORTHO05D006596 2.9e-78 296.6 235 69.4
HPP92_022764 Vanilla planifolia HOM05D005356 ORTHO05D006596 5.0e-78 295.8 220 60.5
SMO118G0252 Selaginella moellendorffii HOM05D005356 ORTHO05D006596 5.5e-77 292.4 267 56.6
CANSAT21G0168 Cannabis sativa HOM05D005356 ORTHO05D006596 6.1e-76 288.9 218 63.8
Sopen04g026690 Solanum pennellii HOM05D005356 ORTHO05D006596 1.0e-75 288.1 224 62.9
CANSAT21G1370 Cannabis sativa HOM05D005356 ORTHO05D006596 4.6e-68 262.7 173 70.5
CSS0033101 Camellia sinensis var. sinensis HOM05D005356 ORTHO05D006596 1.5e-66 257.7 205 65.4
vmacro22188 Vaccinium macrocarpon HOM05D005356 ORTHO05D006596 3.3e-66 256.5 224 59.8
Zm00001eb071770 Zea mays HOM05D005356 ORTHO05D006596 9.7e-66 255.0 190 70.5
Sc03g0005650 Simmondsia chinensis HOM05D005356 ORTHO05D006596 2.2e-62 243.8 202 62.9
Pp3c23_14070 Physcomitrium patens HOM05D005356 ORTHO05D006596 2.7e-60 236.9 244 51.6
Thhalv10016106m.g Eutrema salsugineum HOM05D005356 ORTHO05D006596 1.1e-56 224.9 117 86.3
Actinidia04557 Actinidia chinensis HOM05D005356 ORTHO05D006596 1.7e-49 201.1 224 50.9
MCO10G093 Micromonas commoda HOM05D005356 ORTHO05D006596 6.3e-41 172.6 303 34.0
Cre12.g486600 Chlamydomonas reinhardtii HOM05D005356 ORTHO05D006596 5.0e-38 162.9 314 31.8
Pp3c24_840 Physcomitrium patens HOM05D005356 ORTHO05D006596 1.6e-36 157.9 150 50.7
Glyma.09G223400 Glycine max HOM05D005356 ORTHO05D006596 4.0e-35 153.3 93 74.2
PRCOL_00004977 Prasinoderma coloniale HOM05D005356 ORTHO05D006596 2.4e-32 144.1 314 33.1
CSS0037967 Camellia sinensis var. sinensis HOM05D005356 ORTHO05D006596 1.5e-29 134.8 84 73.8
CBR_g17686 Chara braunii HOM05D005356 ORTHO05D006596 5.4e-24 116.3 98 50.0
CBR_g17688 Chara braunii HOM05D005356 ORTHO05D006596 2.0e-18 97.8 95 49.5
Zm00001eb003380 Zea mays HOM05D001522 ORTHO05D001547 1.2e-15 88.6 81 66.7
Pp3c21_10850 Physcomitrium patens HOM05D005356 ORTHO05D310352 3.3e-13 80.5 189 29.6
HPP92_022763 Vanilla planifolia HOM05D005356 ORTHO05D006596 9.5e-13 79.0 63 60.3


User provided reference genes

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