Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
BcaC04g18779 Brassica carinata HOM05D006461 ORTHO05D008199 4.8e-89 331.3 180 100.0
C09p59590 Brassica napus HOM05D006461 ORTHO05D008199 1.5e-82 309.7 172 96.5
BolC9t58798H Brassica oleracea HOM05D006461 ORTHO05D008199 3.3e-82 308.5 172 96.5
A10p21840 Brassica napus HOM05D006461 ORTHO05D008199 2.9e-78 295.4 184 89.7
BraA10t44244Z Brassica rapa HOM05D006461 ORTHO05D008199 6.5e-78 294.3 178 91.6
BcaB08g36762 Brassica carinata HOM05D006461 ORTHO05D008199 1.8e-75 286.2 180 87.2
Thhalv10014786m.g Eutrema salsugineum HOM05D006461 ORTHO05D008199 3.7e-73 278.5 184 83.7
Sp6g26660 Schrenkiella parvula HOM05D006461 ORTHO05D008199 3.4e-71 271.9 183 82.5
BcaB01g04940 Brassica carinata HOM05D006461 ORTHO05D008199 3.8e-70 268.5 183 82.0
BcaB01g05208 Brassica carinata HOM05D006461 ORTHO05D008199 1.4e-69 266.5 184 82.1
C03p09820 Brassica napus HOM05D006461 ORTHO05D008199 1.4e-69 266.5 184 82.1
Carub.0006s1580 Capsella rubella HOM05D006461 ORTHO05D008199 1.4e-69 266.5 181 82.9
A03p08420 Brassica napus HOM05D006461 ORTHO05D008199 1.9e-69 266.2 185 82.7
BraA03t10165Z Brassica rapa HOM05D006461 ORTHO05D008199 1.9e-69 266.2 185 82.7
BolC3t13470H Brassica oleracea HOM05D006461 ORTHO05D008199 2.5e-69 265.8 184 81.5
AL6G28650 Arabidopsis lyrata HOM05D006461 ORTHO05D008199 3.0e-67 258.8 180 82.2
CARHR195620 Cardamine hirsuta HOM05D006461 ORTHO05D008199 1.9e-66 256.1 180 80.6
Aa31LG11G12100 Aethionema arabicum HOM05D006461 ORTHO05D008199 2.9e-54 215.7 184 72.3
THA.LOC104802902 Tarenaya hassleriana HOM05D006461 ORTHO05D008199 9.1e-48 194.1 186 63.4
AT5G17560 Arabidopsis thaliana HOM05D006461 ORTHO05D008199 5.9e-39 164.9 132 74.2
Atru.chr2.1733 Acer truncatum HOM05D006461 ORTHO05D008199 1.1e-37 160.6 178 57.3
Cfa016120 Carpinus fangiana HOM05D006461 ORTHO05D008199 2.7e-36 156.0 176 54.5
Sed0021956 Sechium edule HOM05D006461 ORTHO05D008199 1.4e-35 153.7 140 62.1
Thecc.05G228900 Theobroma cacao HOM05D006461 ORTHO05D008199 1.4e-35 153.7 192 52.1
CiPaw.05G210400 Carya illinoinensis HOM05D006461 ORTHO05D008199 2.3e-35 152.9 181 55.8
ClCG01G005420 Citrullus lanatus HOM05D006461 ORTHO05D008199 3.0e-35 152.5 141 63.8
Manes.08G158500 Manihot esculenta HOM05D006461 ORTHO05D008199 5.2e-35 151.8 189 54.0
CsaV3_5G005660 Cucumis sativus L. HOM05D006461 ORTHO05D008199 1.2e-34 150.6 96 79.2
QL09p005902 Quercus lobata HOM05D006461 ORTHO05D008199 2.0e-34 149.8 178 51.1
MELO3C005387.2 Cucumis melo HOM05D006461 ORTHO05D008199 2.6e-34 149.4 141 61.7
Prupe.1G398900 Prunus persica HOM05D006461 ORTHO05D008199 2.6e-34 149.4 96 79.2
Phvul.007G281100 Phaseolus vulgaris HOM05D006461 ORTHO05D008199 5.7e-34 148.3 96 78.1
Glyma.02G000900 Glycine max HOM05D006461 ORTHO05D008199 1.3e-33 147.1 95 77.9
MD15G1045100 Malus domestica HOM05D006461 ORTHO05D008199 1.3e-33 147.1 96 77.1
Potri.013G074100 Populus trichocarpa HOM05D006461 ORTHO05D008199 1.3e-33 147.1 104 74.0
Duzib106G1824 Durio zibethinus HOM05D006461 ORTHO05D008199 1.7e-33 146.7 189 52.4
MD08G1049500 Malus domestica HOM05D006461 ORTHO05D008199 1.7e-33 146.7 148 58.8
Ca_26296_v3 Cicer arietinum L. HOM05D006461 ORTHO05D008199 2.2e-33 146.4 95 77.9
Medtr1g040145 Medicago truncatula HOM05D006461 ORTHO05D008199 2.2e-33 146.4 95 76.8
arahy.Tifrunner.gnm1.ann1.8SK5FU Arachis hypogaea HOM05D006461 ORTHO05D008199 2.8e-33 146.0 96 76.0
arahy.Tifrunner.gnm1.ann1.W7YZT9 Arachis hypogaea HOM05D006461 ORTHO05D008199 2.8e-33 146.0 96 76.0
RcHm_v2.0_Chr4g0406641 Rosa chinensis HOM05D006461 ORTHO05D008199 2.8e-33 146.0 95 78.9
VMungo0720G0947 Vigna mungo HOM05D006461 ORTHO05D008199 2.8e-33 146.0 95 76.8
Nn3g19117 Nelumbo nucifera HOM05D006461 ORTHO05D008199 3.7e-33 145.6 150 58.0
TPR.G30220 Trifolium pratense HOM05D006461 ORTHO05D008199 3.7e-33 145.6 95 78.9
TAR375G0815 Trochodendron aralioides HOM05D006461 ORTHO05D008199 3.7e-33 145.6 178 52.8
Manes.09G131300 Manihot esculenta HOM05D006461 ORTHO05D008199 8.3e-33 144.4 104 71.2
TWI32G0808 Tripterygium wilfordii HOM05D006461 ORTHO05D008199 8.3e-33 144.4 171 54.4
Gohir.D13G163800 Gossypium hirsutum HOM05D006461 ORTHO05D008199 1.1e-32 144.1 188 50.5
Lj6g0024347 Lotus japonicus HOM05D006461 ORTHO05D008199 1.1e-32 144.1 95 76.8
CANSAT54G2891 Cannabis sativa HOM05D006461 ORTHO05D008199 1.8e-32 143.3 90 81.1
CiPaw.06G037900 Carya illinoinensis HOM05D006461 ORTHO05D008199 1.8e-32 143.3 181 52.5
FvH4_4g10840 Fragaria vesca HOM05D006461 ORTHO05D008199 1.8e-32 143.3 95 75.8
FAN12G0004 Fragaria x ananassa HOM05D006461 ORTHO05D008199 1.8e-32 143.3 95 75.8
FAN17G2347 Fragaria x ananassa HOM05D006461 ORTHO05D008199 1.8e-32 143.3 95 75.8
Aqoxy3G01574 Aquilegia oxysepala HOM05D006461 ORTHO05D008199 2.4e-32 142.9 100 75.0
Ciclev10032825m.g Citrus clementina HOM05D006461 ORTHO05D008199 2.4e-32 142.9 174 53.4
PGR119G0757 Punica granatum HOM05D006461 ORTHO05D008199 2.4e-32 142.9 93 78.5
Hma1.2p1_0074F.1_g039100 Hydrangea macrophylla HOM05D006461 ORTHO05D008199 3.1e-32 142.5 97 76.3
Gorai.013G199400 Gossypium raimondii HOM05D006461 ORTHO05D008199 4.1e-32 142.1 188 50.0
Rhsim03G0225700 Rhododendron simsii HOM05D006461 ORTHO05D008199 5.4e-32 141.7 104 70.2
Gohir.A13G158700 Gossypium hirsutum HOM05D006461 ORTHO05D008199 7.0e-32 141.4 188 50.0
Actinidia08786 Actinidia chinensis HOM05D006461 ORTHO05D008199 2.7e-31 139.4 106 68.9
DCAR_020437 Daucus carota HOM05D006461 ORTHO05D008199 2.7e-31 139.4 89 77.5
Dinv19309 Davidia involucrata HOM05D006461 ORTHO05D008199 3.5e-31 139.0 98 74.5
Nitab4.5_0000021g0870 Nicotiana tabacum HOM05D006461 ORTHO05D008199 4.5e-31 138.7 95 76.8
Cc02_g00020 Coffea canephora HOM05D006461 ORTHO05D008199 7.7e-31 137.9 86 79.1
Nitab4.5_0005545g0020 Nicotiana tabacum HOM05D006461 ORTHO05D008199 1.0e-30 137.5 95 75.8
Peaxi162Scf00516g00428 Petunia axillaris HOM05D006461 ORTHO05D008199 1.0e-30 137.5 95 76.8
CAN.G732.29 Capsicum annuum HOM05D006461 ORTHO05D008199 1.7e-30 136.7 95 75.8
Ah.08g222190 Amaranthus hybridus HOM05D006461 ORTHO05D008199 2.9e-30 136.0 101 71.3
Psat6g101920 Pisum sativum HOM05D006461 ORTHO05D008199 2.9e-30 136.0 164 51.2
ECA232G1267 Erigeron canadensis HOM05D006461 ORTHO05D008199 3.8e-30 135.6 96 76.0
TWI60G1716 Tripterygium wilfordii HOM05D006461 ORTHO05D008199 3.8e-30 135.6 149 53.0
Lsat_1_v5_gn_9_48000 Lactuca sativa HOM05D006461 ORTHO05D008199 6.5e-30 134.8 96 75.0
PSO063G2738 Papaver somniferum HOM05D006461 ORTHO05D008199 6.5e-30 134.8 185 50.3
Sopen03g028120 Solanum pennellii HOM05D006461 ORTHO05D008199 8.6e-30 134.4 95 71.6
CDE12G0687 Ceratophyllum demersum HOM05D006461 ORTHO05D008199 1.1e-29 134.0 95 68.4
Sc03g0004610 Simmondsia chinensis HOM05D006461 ORTHO05D008199 1.1e-29 134.0 89 75.3
PGSC0003DMG400026478 Solanum tuberosum HOM05D006461 ORTHO05D008199 1.1e-29 134.0 95 72.6
Os06g0484600 Oryza sativa ssp. japonica HOM05D006461 ORTHO05D008199 1.5e-29 133.7 97 71.1
Solyc03g097360.3 Solanum lycopersicum HOM05D006461 ORTHO05D008199 3.2e-29 132.5 95 70.5
SEGI_06006 Sequoiadendron giganteum HOM05D006461 ORTHO05D008199 4.2e-29 132.1 90 70.0
Cc11_g04930 Coffea canephora HOM05D006461 ORTHO05D008199 9.5e-29 131.0 86 75.6
Hund20961 Selenicereus undatus HOM05D006461 ORTHO05D008199 9.5e-29 131.0 92 72.8
SGA_v2.0_scaffold51G18860 Striga asiatica HOM05D006461 ORTHO05D008199 9.5e-29 131.0 177 50.8
unitig_62.g23822 Utricularia gibba HOM05D006461 ORTHO05D008199 9.5e-29 131.0 96 74.0
Sabra13G0064300 Salix brachista HOM05D006461 ORTHO05D008199 2.8e-28 129.4 139 56.8
Migut.F00927 Erythranthe guttata HOM05D006461 ORTHO05D008199 4.7e-28 128.6 147 56.5
AUR62001576 Chenopodium quinoa HOM05D006461 ORTHO05D008199 8.0e-28 127.9 183 49.7
AUR62020207 Chenopodium quinoa HOM05D006461 ORTHO05D008199 1.0e-27 127.5 183 49.7
HanXRQChr05g0140271 Helianthus annuus HOM05D006461 ORTHO05D008199 1.0e-27 127.5 98 70.4
Zm00001eb278180 Zea mays HOM05D006461 ORTHO05D008199 1.4e-27 127.1 148 52.7
EL10Ac7g16271 Beta vulgaris HOM05D006461 ORTHO05D008199 1.8e-27 126.7 185 48.1
Lj7P538T25 Lonicera japonica HOM05D006461 ORTHO05D008199 1.8e-27 126.7 75 84.0
GSVIVG01024255001 Vitis vinifera HOM05D006461 ORTHO05D008199 3.0e-27 125.9 75 84.0
MSTRG.8560 Avicennia marina HOM05D006461 ORTHO05D008199 2.6e-26 122.9 171 49.7
AagrBONN_evm.TU.Sc2ySwM_117.1385 Anthoceros agrestis HOM05D006461 ORTHO05D008199 2.2e-25 119.8 97 60.8
SMO358G0572 Selaginella moellendorffii HOM05D006461 ORTHO05D008199 2.8e-25 119.4 95 63.2
Mapoly0098s0024 Marchantia polymorpha HOM05D006461 ORTHO05D008199 1.4e-24 117.1 179 46.4
SalBow2G0694 Salvia bowleyana HOM05D006461 ORTHO05D008199 1.4e-24 117.1 160 48.8
Hund18806 Selenicereus undatus HOM05D006461 ORTHO05D008199 1.8e-24 116.7 150 46.7
Pp3c1_12810 Physcomitrium patens HOM05D006461 ORTHO05D008199 3.1e-24 115.9 97 62.9
HPP92_003741 Vanilla planifolia HOM05D001207 ORTHO05D007056 5.4e-24 115.2 73 78.1
Haze_00341 Corylus avellana HOM05D006461 ORTHO05D000508 2.0e-23 113.2 226 39.4
Actinidia24631 Actinidia chinensis HOM05D006461 ORTHO05D008199 5.9e-23 111.7 75 76.0
Sed0001670 Sechium edule HOM05D006461 ORTHO05D008199 5.0e-22 108.6 145 47.6
Cre09.g394701 Chlamydomonas reinhardtii HOM05D006461 ORTHO05D008199 2.3e-19 99.8 82 59.8
PRCOL_00004611 Prasinoderma coloniale HOM05D006461 ORTHO05D008199 6.4e-17 91.7 92 50.0
MCO16G354 Micromonas commoda HOM05D006461 ORTHO05D008199 9.2e-16 87.8 77 59.7
Cpa.g.sc2589.1 Carica papaya HOM05D006461 ORTHO05D008199 3.0e-14 82.8 137 45.3
CSS0025765 Camellia sinensis var. sinensis HOM05D006461 ORTHO05D008199 3.9e-14 82.4 45 84.4
CSS0040075 Camellia sinensis var. sinensis HOM05D006461 ORTHO05D008199 3.9e-14 82.4 45 84.4
Lalb_Chr19g0127781 Lupinus albus HOM05D006461 ORTHO05D008199 1.1e-13 80.9 45 86.7
SMO358G0215 Selaginella moellendorffii HOM05D006461 ORTHO05D008199 1.5e-13 80.5 72 48.6
SHI39095 Sapria himalayana HOM05D006461 ORTHO05D008199 2.5e-13 79.7 102 47.1
Eucgr.A02995 Eucalyptus grandis HOM05D006461 ORTHO05D008199 7.3e-13 78.2 100 48.0
Thhalv10002241m.g Eutrema salsugineum HOM05D006461 ORTHO05D008199 8.3e-09 64.7 47 78.7
Actinidia28897 Actinidia chinensis HOM05D006461 ORTHO05D008199 1.4e-08 63.9 65 53.8
AL3G12640 Arabidopsis lyrata HOM05D006461 ORTHO05D008199 3.2e-08 62.8 74 54.1
AL3G12680 Arabidopsis lyrata HOM05D000403 ORTHO05D000350 1.2e-07 60.8 39 79.5
AL3G13180 Arabidopsis lyrata HOM05D058763 ORTHO05D079728 2.7e-07 59.7 58 56.9
Nitab4.5_0000598g0090 Nicotiana tabacum HOM05D002854 ORTHO05D003051 6.0e-07 58.5 148 34.5
Aa31LG5G14020 Aethionema arabicum HOM05D006461 ORTHO05D008199 1.7e-06 57.0 105 45.7
Nitab4.5_0010989g0010 Nicotiana tabacum HOM05D002854 ORTHO05D003051 2.3e-06 56.6 133 33.8
Pp3c5_25080 Physcomitrium patens HOM05D002854 ORTHO05D003051 3.0e-06 56.2 90 38.9
BcaNung02408 Brassica carinata HOM05D002854 ORTHO05D003051 8.6e-06 54.7 89 39.3


User provided reference genes

Program Settings