Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
BcaC04g18670 Brassica carinata HOM05D006881 ORTHO05D008423 8.0e-58 226.9 114 100.0
C09p57950 Brassica napus HOM05D006881 ORTHO05D008423 7.3e-35 150.6 95 83.2
BolC9t58662H Brassica oleracea HOM05D006881 ORTHO05D008423 3.6e-34 148.3 101 78.2
BcaB05g23335 Brassica carinata HOM05D006881 ORTHO05D008423 4.2e-22 108.2 91 61.5
A02p04970 Brassica napus HOM05D006881 ORTHO05D008423 4.2e-22 108.2 91 61.5
BcaC03g13606 Brassica carinata HOM05D006881 ORTHO05D008423 5.4e-22 107.8 64 82.8
C02p10000 Brassica napus HOM05D006881 ORTHO05D008423 5.4e-22 107.8 64 82.8
CARHR194480 Cardamine hirsuta HOM05D006881 ORTHO05D008423 5.4e-22 107.8 91 61.5
Thhalv10014829m.g Eutrema salsugineum HOM05D006881 ORTHO05D008423 5.4e-22 107.8 91 62.6
BraA02t05456Z Brassica rapa HOM05D006881 ORTHO05D008423 1.6e-21 106.3 91 60.4
Sp6g25790 Schrenkiella parvula HOM05D006881 ORTHO05D008423 1.6e-21 106.3 91 61.5
BolC2t06902H Brassica oleracea HOM05D006881 ORTHO05D008423 2.7e-21 105.5 64 81.2
Carub.0006s1681 Capsella rubella HOM05D006881 ORTHO05D008423 4.6e-21 104.8 91 59.3
AL6G29810 Arabidopsis lyrata HOM05D006881 ORTHO05D008423 7.8e-21 104.0 91 59.3
AT5G18540 Arabidopsis thaliana HOM05D006881 ORTHO05D008423 7.8e-21 104.0 91 59.3
Aa31LG11G11080 Aethionema arabicum HOM05D006881 ORTHO05D008423 1.1e-19 100.1 100 59.0
Thecc.04G282000 Theobroma cacao HOM05D006881 ORTHO05D008423 4.3e-19 98.2 78 70.5
A10p21020 Brassica napus HOM05D006881 ORTHO05D008423 5.6e-19 97.8 69 73.9
Cpa.g.sc16.153 Carica papaya HOM05D006881 ORTHO05D008423 7.3e-19 97.4 102 55.9
Potri.008G216700 Populus trichocarpa HOM05D006881 ORTHO05D008423 7.3e-19 97.4 90 58.9
Sabra08G0154800 Salix brachista HOM05D006881 ORTHO05D008423 1.6e-18 96.3 88 58.0
Nitab4.5_0013689g0020 Nicotiana tabacum HOM05D006881 ORTHO05D008423 2.1e-18 95.9 64 75.0
CAN.G223.19 Capsicum annuum HOM05D006881 ORTHO05D008423 6.2e-18 94.4 63 74.6
Duzib212G0198 Durio zibethinus HOM05D006881 ORTHO05D008423 6.2e-18 94.4 87 65.5
QL06p008283 Quercus lobata HOM05D006881 ORTHO05D008423 6.2e-18 94.4 79 62.0
Manes.03G192600 Manihot esculenta HOM05D006881 ORTHO05D008423 1.1e-17 93.6 88 58.0
Sopen01g029530 Solanum pennellii HOM05D006881 ORTHO05D008423 1.1e-17 93.6 63 74.6
PGSC0003DMG400010658 Solanum tuberosum HOM05D006881 ORTHO05D008423 1.8e-17 92.8 64 71.9
Actinidia00041 Actinidia chinensis HOM05D006881 ORTHO05D008423 3.1e-17 92.0 71 69.0
Peaxi162Scf00386g00414 Petunia axillaris HOM05D006881 ORTHO05D008423 3.1e-17 92.0 89 58.4
Nn3g21363 Nelumbo nucifera HOM05D006881 ORTHO05D008423 4.0e-17 91.7 94 59.6
Solyc01g067580.4 Solanum lycopersicum HOM05D006881 ORTHO05D008423 4.0e-17 91.7 63 73.0
CiPaw.01G150600 Carya illinoinensis HOM05D006881 ORTHO05D008423 6.9e-17 90.9 64 73.4
Medtr2g437470 Medicago truncatula HOM05D006881 ORTHO05D008423 6.9e-17 90.9 72 63.9
Hma1.2p1_0698F.1_g205340 Hydrangea macrophylla HOM05D006881 ORTHO05D008423 9.0e-17 90.5 71 67.6
THA.LOC104818851 Tarenaya hassleriana HOM05D006881 ORTHO05D008423 9.0e-17 90.5 82 65.9
Atru.chr4.2800 Acer truncatum HOM05D006881 ORTHO05D008423 1.2e-16 90.1 77 64.9
arahy.Tifrunner.gnm1.ann1.NXX1KJ Arachis hypogaea HOM05D006881 ORTHO05D008423 1.2e-16 90.1 63 71.4
HanXRQChr17g0536111 Helianthus annuus HOM05D006881 ORTHO05D008423 1.5e-16 89.7 91 54.9
Ciclev10005896m.g Citrus clementina HOM05D006881 ORTHO05D008423 2.0e-16 89.4 77 64.9
arahy.Tifrunner.gnm1.ann1.E8HU74 Arachis hypogaea HOM05D006881 ORTHO05D008423 2.6e-16 89.0 63 69.8
Migut.G00182 Erythranthe guttata HOM05D006881 ORTHO05D008423 2.6e-16 89.0 64 68.8
Lalb_Chr18g0051811 Lupinus albus HOM05D006881 ORTHO05D008423 2.6e-16 89.0 88 56.8
Oeu021111.1 Olea europaea HOM05D006881 ORTHO05D008423 2.6e-16 89.0 64 70.3
TAR636G2672 Trochodendron aralioides HOM05D006881 ORTHO05D008423 4.5e-16 88.2 88 54.5
unitig_748.g8741 Utricularia gibba HOM05D006881 ORTHO05D008423 4.5e-16 88.2 91 51.6
Dinv38306 Davidia involucrata HOM05D006881 ORTHO05D008423 5.8e-16 87.8 88 56.8
Psat1g151960 Pisum sativum HOM05D006881 ORTHO05D008423 5.8e-16 87.8 63 69.8
ClCG05G005980 Citrullus lanatus HOM05D006881 ORTHO05D008423 7.6e-16 87.4 65 75.4
Cc03_g02070 Coffea canephora HOM05D006881 ORTHO05D008423 7.6e-16 87.4 81 60.5
BraA10t44166Z Brassica rapa HOM05D006881 ORTHO05D008423 9.9e-16 87.0 68 66.2
Sed0007304 Sechium edule HOM05D006881 ORTHO05D008423 9.9e-16 87.0 65 72.3
vmacro15245 Vaccinium macrocarpon HOM05D006881 ORTHO05D008423 9.9e-16 87.0 88 55.7
CANSAT78G0809 Cannabis sativa HOM05D006881 ORTHO05D008423 1.3e-15 86.7 81 65.4
SalBow2G0124 Salvia bowleyana HOM05D006881 ORTHO05D008423 1.3e-15 86.7 64 68.8
SalBow2G2956 Salvia bowleyana HOM05D006881 ORTHO05D008423 1.3e-15 86.7 64 68.8
Prupe.1G139200 Prunus persica HOM05D006881 ORTHO05D008423 2.2e-15 85.9 69 71.0
TPR.G23710 Trifolium pratense HOM05D006881 ORTHO05D008423 2.2e-15 85.9 63 68.3
MSTRG.10082 Avicennia marina HOM05D006881 ORTHO05D008423 3.8e-15 85.1 64 64.1
Eucgr.B01283 Eucalyptus grandis HOM05D006881 ORTHO05D008423 3.8e-15 85.1 64 68.8
Gohir.A02G048200 Gossypium hirsutum HOM05D006881 ORTHO05D008423 4.9e-15 84.7 75 65.3
Gohir.D02G053300 Gossypium hirsutum HOM05D006881 ORTHO05D008423 4.9e-15 84.7 75 65.3
Gorai.005G059100 Gossypium raimondii HOM05D006881 ORTHO05D008423 4.9e-15 84.7 75 65.3
PGR031G0133 Punica granatum HOM05D006881 ORTHO05D008423 4.9e-15 84.7 104 51.9
TWI09G1277 Tripterygium wilfordii HOM05D006881 ORTHO05D008423 4.9e-15 84.7 59 74.6
FvH4_4g17670 Fragaria vesca HOM05D006881 ORTHO05D008423 8.4e-15 84.0 59 78.0
FAN07G1171 Fragaria x ananassa HOM05D006881 ORTHO05D008423 8.4e-15 84.0 59 78.0
FAN12G2006 Fragaria x ananassa HOM05D006881 ORTHO05D008423 8.4e-15 84.0 59 78.0
FAN12G2996 Fragaria x ananassa HOM05D006881 ORTHO05D008423 8.4e-15 84.0 59 78.0
FAN17G1543 Fragaria x ananassa HOM05D006881 ORTHO05D008423 8.4e-15 84.0 59 78.0
Lsat_1_v5_gn_3_24181 Lactuca sativa HOM05D006881 ORTHO05D008423 8.4e-15 84.0 69 66.7
Rhsim02G0011900 Rhododendron simsii HOM05D006881 ORTHO05D008423 8.4e-15 84.0 64 68.8
HPP92_025226 Vanilla planifolia HOM05D006881 ORTHO05D008423 8.4e-15 84.0 84 57.1
CsaV3_3G014430 Cucumis sativus L. HOM05D006881 ORTHO05D008423 1.1e-14 83.6 65 72.3
DCAR_024558 Daucus carota HOM05D006881 ORTHO05D008423 1.1e-14 83.6 69 65.2
MBI19_g24002_MAGBIO Magnolia biondii HOM05D006881 ORTHO05D008423 1.1e-14 83.6 64 67.2
PSO170G5464 Papaver somniferum HOM05D006881 ORTHO05D008423 1.1e-14 83.6 59 71.2
PSO210G1559 Papaver somniferum HOM05D006881 ORTHO05D008423 1.1e-14 83.6 59 71.2
EL10Ac3g06585 Beta vulgaris HOM05D006881 ORTHO05D008423 1.4e-14 83.2 91 49.5
Phvul.009G245900 Phaseolus vulgaris HOM05D006881 ORTHO05D008423 1.4e-14 83.2 63 69.8
RcHm_v2.0_Chr4g0421611 Rosa chinensis HOM05D006881 ORTHO05D008423 1.4e-14 83.2 69 71.0
HPP92_025214 Vanilla planifolia HOM05D006881 ORTHO05D008423 1.4e-14 83.2 84 57.1
GSVIVG01017769001 Vitis vinifera HOM05D006881 ORTHO05D008423 1.9e-14 82.8 89 52.8
Zm00001eb330210 Zea mays HOM05D006881 ORTHO05D008423 1.9e-14 82.8 68 63.2
SGA_v2.0_scaffold86G26903 Striga asiatica HOM05D006881 ORTHO05D008423 2.4e-14 82.4 67 64.2
Ca_02413_v3 Cicer arietinum L. HOM05D002802 ORTHO05D003166 3.2e-14 82.0 63 66.7
MELO3C006643.2 Cucumis melo HOM05D006881 ORTHO05D008423 3.2e-14 82.0 65 70.8
MD13G1170800 Malus domestica HOM05D006881 ORTHO05D008423 3.2e-14 82.0 59 78.0
Os07g0669600 Oryza sativa ssp. japonica HOM05D006881 ORTHO05D008423 4.2e-14 81.6 68 61.8
VMungo1309G2079 Vigna mungo HOM05D006881 ORTHO05D008423 4.2e-14 81.6 63 68.3
SHI00284 Sapria himalayana HOM05D006881 ORTHO05D008423 7.1e-14 80.9 68 58.8
CSS0005297 Camellia sinensis var. sinensis HOM05D006881 ORTHO05D008423 9.3e-14 80.5 74 60.8
CSS0009612 Camellia sinensis var. sinensis HOM05D006881 ORTHO05D008423 9.3e-14 80.5 74 60.8
Glyma.09G046900 Glycine max HOM05D006881 ORTHO05D008423 9.3e-14 80.5 68 64.7
ECA246G4172 Erigeron canadensis HOM05D006881 ORTHO05D008423 1.2e-13 80.1 71 62.0
Hund20570 Selenicereus undatus HOM05D006881 ORTHO05D008423 1.6e-13 79.7 93 46.2
CSS0034417 Camellia sinensis var. sinensis HOM05D006881 ORTHO05D008423 2.7e-13 79.0 74 59.5
Glyma.15G154400 Glycine max HOM05D006881 ORTHO05D008423 6.0e-13 77.8 68 64.7
Lj6g0021421 Lotus japonicus HOM05D006881 ORTHO05D008423 1.0e-12 77.0 63 63.5
Aqoxy2G03052 Aquilegia oxysepala HOM05D006881 ORTHO05D008423 1.8e-12 76.3 90 50.0
Ah.13g074590 Amaranthus hybridus HOM05D006881 ORTHO05D008423 5.1e-12 74.7 71 53.5
SMO367G0816 Selaginella moellendorffii HOM05D006881 ORTHO05D008423 1.5e-11 73.2 59 62.7
TWI73G0635 Tripterygium wilfordii HOM05D006881 ORTHO05D008423 1.9e-11 72.8 43 79.1
CDE09G1155 Ceratophyllum demersum HOM05D006881 ORTHO05D008423 2.5e-11 72.4 65 61.5
ATR0706G047 Amborella trichopoda HOM05D006881 ORTHO05D008423 4.3e-11 71.6 44 75.0
Haze_01236 Corylus avellana HOM05D006881 ORTHO05D008423 3.6e-10 68.6 74 55.4
AUR62040384 Chenopodium quinoa HOM05D006881 ORTHO05D008423 6.2e-10 67.8 58 56.9
Sc19g0005040 Simmondsia chinensis HOM05D006881 ORTHO05D008423 6.2e-10 67.8 90 45.6
CDE02G3907 Ceratophyllum demersum HOM05D006881 ORTHO05D008423 1.1e-09 67.0 65 58.5
AagrBONN_evm.TU.Sc2ySwM_228.1971 Anthoceros agrestis HOM05D006881 ORTHO05D008423 6.9e-09 64.3 45 71.1
SEGI_11441 Sequoiadendron giganteum HOM05D006881 ORTHO05D008423 1.2e-08 63.5 39 71.8
Pp3c15_10020 Physcomitrium patens HOM05D006881 ORTHO05D008423 7.6e-08 60.8 39 69.2
Mapoly0010s0048 Marchantia polymorpha HOM05D006881 ORTHO05D008423 1.3e-07 60.1 61 54.1
CBR_g46646 Chara braunii HOM05D006881 ORTHO05D008423 2.9e-07 58.9 44 61.4


User provided reference genes

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