Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
BcaC04g18624 Brassica carinata HOM05D004860 ORTHO05D006366 2.9e-186 655.2 357 100.0
C09p57430 Brassica napus HOM05D004860 ORTHO05D006366 6.0e-184 647.5 357 99.2
BolC9t58612H Brassica oleracea HOM05D004860 ORTHO05D006366 7.8e-184 647.1 324 99.4
A10p20640 Brassica napus HOM05D004860 ORTHO05D006366 5.0e-183 644.4 325 99.4
BraA10t44127Z Brassica rapa HOM05D004860 ORTHO05D006366 4.3e-182 641.3 325 99.1
BcaB08g36622 Brassica carinata HOM05D004860 ORTHO05D006366 4.9e-178 627.9 324 96.3
Thhalv10013904m.g Eutrema salsugineum HOM05D004860 ORTHO05D006366 1.0e-175 620.2 327 95.1
AT5G19050 Arabidopsis thaliana HOM05D004860 ORTHO05D006366 4.3e-174 614.8 329 94.2
AL6G30430 Arabidopsis lyrata HOM05D004860 ORTHO05D006366 5.6e-174 614.4 329 94.2
Carub.0006s1737 Capsella rubella HOM05D004860 ORTHO05D006366 9.5e-174 613.6 329 93.9
Sp6g25330 Schrenkiella parvula HOM05D004860 ORTHO05D006366 1.2e-173 613.2 327 94.8
BraA03t10247Z Brassica rapa HOM05D004860 ORTHO05D006366 8.1e-173 610.5 327 93.9
BolC3t13554H Brassica oleracea HOM05D004860 ORTHO05D006366 2.6e-171 605.5 327 93.3
BcaB01g04878 Brassica carinata HOM05D004860 ORTHO05D006366 1.3e-170 603.2 327 93.0
BcaB01g05289 Brassica carinata HOM05D004860 ORTHO05D006366 1.3e-170 603.2 327 93.0
CARHR193940 Cardamine hirsuta HOM05D004860 ORTHO05D006366 4.1e-169 598.2 327 92.4
Aa31LG11G10670 Aethionema arabicum HOM05D004860 ORTHO05D006366 9.6e-166 587.0 338 88.2
C03p10800 Brassica napus HOM05D004860 ORTHO05D006366 8.1e-165 583.9 319 92.8
A03p09270 Brassica napus HOM05D004860 ORTHO05D006366 1.4e-161 573.2 310 93.9
THA.LOC104822311 Tarenaya hassleriana HOM05D004860 ORTHO05D006366 1.1e-158 563.5 328 86.3
THA.LOC104818790 Tarenaya hassleriana HOM05D004860 ORTHO05D006366 5.6e-158 561.2 336 86.0
Thecc.04G221400 Theobroma cacao HOM05D004860 ORTHO05D006366 2.5e-150 535.8 326 81.3
Potri.008G202300 Populus trichocarpa HOM05D004860 ORTHO05D006366 5.6e-150 534.6 327 80.1
Duzib268G1873 Durio zibethinus HOM05D004860 ORTHO05D006366 7.4e-150 534.3 327 81.3
COL.COLO4_21645 Corchorus olitorius HOM05D004860 ORTHO05D006366 1.3e-149 533.5 306 85.6
Gohir.A05G316600 Gossypium hirsutum HOM05D004860 ORTHO05D006366 2.1e-149 532.7 327 82.0
PGR031G2771 Punica granatum HOM05D004860 ORTHO05D006366 3.6e-149 531.9 324 80.6
Duzib212G0960 Durio zibethinus HOM05D004860 ORTHO05D006366 6.2e-149 531.2 333 81.1
Solyc01g080140.3 Solanum lycopersicum HOM05D004860 ORTHO05D006366 8.1e-149 530.8 328 79.6
Sopen01g031920 Solanum pennellii HOM05D004860 ORTHO05D006366 4.0e-148 528.5 328 79.3
Nitab4.5_0001247g0010 Nicotiana tabacum HOM05D004860 ORTHO05D006366 9.0e-148 527.3 326 80.1
Atru.chr4.2574 Acer truncatum HOM05D004860 ORTHO05D006366 2.0e-147 526.2 326 78.8
CANSAT78G2493 Cannabis sativa HOM05D004860 ORTHO05D006366 4.5e-147 525.0 327 79.5
RcHm_v2.0_Chr4g0418381 Rosa chinensis HOM05D004860 ORTHO05D006366 6.4e-146 521.2 325 79.4
Sed0000368 Sechium edule HOM05D004860 ORTHO05D006366 6.4e-146 521.2 325 78.8
ClCG05G005460 Citrullus lanatus HOM05D004860 ORTHO05D006366 1.1e-145 520.4 323 78.6
Gorai.009G340700 Gossypium raimondii HOM05D004860 ORTHO05D006366 1.4e-145 520.0 341 78.3
Ciclev10005293m.g Citrus clementina HOM05D004860 ORTHO05D006366 1.9e-145 519.6 324 79.3
QL06p004255 Quercus lobata HOM05D004860 ORTHO05D006366 3.2e-145 518.8 322 80.7
MELO3C006570.2 Cucumis melo HOM05D004860 ORTHO05D006366 5.5e-145 518.1 323 78.6
FAN07G1456 Fragaria x ananassa HOM05D004860 ORTHO05D006366 7.1e-145 517.7 325 78.8
Actinidia40192 Actinidia chinensis HOM05D004860 ORTHO05D006366 9.3e-145 517.3 327 78.6
FAN22G2324 Fragaria x ananassa HOM05D004860 ORTHO05D006366 1.2e-144 516.9 325 79.1
MD16G1183500 Malus domestica HOM05D004860 ORTHO05D006366 1.2e-144 516.9 323 79.6
Eucgr.D02658 Eucalyptus grandis HOM05D004860 ORTHO05D006366 1.6e-144 516.5 327 79.5
MD13G1182900 Malus domestica HOM05D004860 ORTHO05D006366 3.5e-144 515.4 323 79.6
Manes.15G022900 Manihot esculenta HOM05D004860 ORTHO05D006366 3.5e-144 515.4 326 79.4
CsaV3_3G013760 Cucumis sativus L. HOM05D004860 ORTHO05D006366 6.0e-144 514.6 323 78.0
CiPaw.02G092200 Carya illinoinensis HOM05D004860 ORTHO05D006366 1.8e-143 513.1 327 76.8
TWI73G0632 Tripterygium wilfordii HOM05D004860 ORTHO05D006366 2.3e-143 512.7 327 78.0
CSS0038220 Camellia sinensis var. sinensis HOM05D004860 ORTHO05D006366 3.9e-143 511.9 324 79.3
TAR636G2819 Trochodendron aralioides HOM05D004860 ORTHO05D006366 1.5e-142 510.0 324 78.7
FvH4_4g14470 Fragaria vesca HOM05D004860 ORTHO05D006366 3.3e-142 508.8 324 78.4
FAN12G3962 Fragaria x ananassa HOM05D004860 ORTHO05D006366 5.6e-142 508.1 324 78.4
Glyma.07G256800 Glycine max HOM05D004860 ORTHO05D006366 7.4e-142 507.7 325 78.5
Oeu029304.1 Olea europaea HOM05D004860 ORTHO05D006366 9.6e-142 507.3 325 77.8
TPR.G20138 Trifolium pratense HOM05D004860 ORTHO05D006366 1.3e-141 506.9 327 75.8
Dinv38393 Davidia involucrata HOM05D001530 ORTHO05D004168 2.8e-141 505.8 320 80.9
Glyma.17G017300 Glycine max HOM05D004860 ORTHO05D006366 3.7e-141 505.4 325 77.5
Migut.N00151 Erythranthe guttata HOM05D004860 ORTHO05D006366 4.8e-141 505.0 329 76.0
Ah.07g203980 Amaranthus hybridus HOM05D004860 ORTHO05D006366 6.2e-141 504.6 326 76.1
TAR365G0160 Trochodendron aralioides HOM05D004860 ORTHO05D006366 6.2e-141 504.6 321 78.8
MBI17_g12009_MAGBIO Magnolia biondii HOM05D004860 ORTHO05D006366 5.3e-140 501.5 324 77.2
GSVIVG01017886001 Vitis vinifera HOM05D004860 ORTHO05D006366 5.3e-140 501.5 304 82.2
Medtr4g117310 Medicago truncatula HOM05D004860 ORTHO05D006366 2.0e-139 499.6 324 76.2
arahy.Tifrunner.gnm1.ann1.PDW3QZ Arachis hypogaea HOM05D004860 ORTHO05D006366 3.4e-139 498.8 328 75.6
ECA240G4413 Erigeron canadensis HOM05D004860 ORTHO05D006366 5.8e-139 498.0 304 79.3
Lalb_Chr07g0177321 Lupinus albus HOM05D004860 ORTHO05D006366 5.8e-139 498.0 324 75.9
Nn4g26191 Nelumbo nucifera HOM05D004860 ORTHO05D006366 5.8e-139 498.0 325 76.0
Peaxi162Scf01766g00011 Petunia axillaris HOM05D004860 ORTHO05D006366 5.8e-139 498.0 324 75.3
arahy.Tifrunner.gnm1.ann1.K193BP Arachis hypogaea HOM05D004860 ORTHO05D006366 7.6e-139 497.7 328 75.9
Phvul.003G093000 Phaseolus vulgaris HOM05D004860 ORTHO05D006366 1.0e-138 497.3 323 75.9
Lj4g0005512 Lotus japonicus HOM05D004860 ORTHO05D006366 1.7e-138 496.5 324 75.0
Cc03_g03100 Coffea canephora HOM05D004860 ORTHO05D006366 2.9e-138 495.7 308 78.9
EL10Ac3g06352 Beta vulgaris HOM05D004860 ORTHO05D006366 1.9e-137 493.0 366 68.0
Psat4g031440 Pisum sativum HOM05D004860 ORTHO05D006366 1.9e-137 493.0 326 76.1
MSTRG.24756 Avicennia marina HOM05D004860 ORTHO05D006366 3.2e-137 492.3 332 73.5
CAN.G183.30 Capsicum annuum HOM05D004860 ORTHO05D006366 4.2e-137 491.9 326 75.8
PSO407G0112 Papaver somniferum HOM05D004860 ORTHO05D006366 9.3e-137 490.7 327 74.6
PSO170G1688 Papaver somniferum HOM05D004860 ORTHO05D006366 1.2e-136 490.3 327 74.9
SalBow5G0733 Salvia bowleyana HOM05D004860 ORTHO05D006366 1.2e-136 490.3 330 73.0
SalBow5G4413 Salvia bowleyana HOM05D004860 ORTHO05D006366 1.2e-136 490.3 330 73.0
Lj3C761T9 Lonicera japonica HOM05D004860 ORTHO05D006366 1.6e-136 490.0 321 75.7
Ah.13g074180 Amaranthus hybridus HOM05D004860 ORTHO05D006366 7.9e-136 487.6 328 73.5
Haze_00965 Corylus avellana HOM05D004860 ORTHO05D006366 7.9e-136 487.6 402 63.4
CDE02G3435 Ceratophyllum demersum HOM05D004860 ORTHO05D006366 3.0e-135 485.7 327 75.2
Ca_21591_v3 Cicer arietinum L. HOM05D004860 ORTHO05D006366 3.0e-135 485.7 309 77.3
SEGI_28969 Sequoiadendron giganteum HOM05D004860 ORTHO05D006366 3.0e-135 485.7 284 81.3
Aqoxy2G03261 Aquilegia oxysepala HOM05D004860 ORTHO05D006366 5.1e-135 485.0 317 75.4
HanXRQChr09g0248101 Helianthus annuus HOM05D004860 ORTHO05D006366 8.7e-135 484.2 291 81.1
Cfa015580 Carpinus fangiana HOM05D004860 ORTHO05D006366 4.3e-134 481.9 303 78.5
Gohir.D05G318100 Gossypium hirsutum HOM05D004860 ORTHO05D006366 5.7e-134 481.5 327 75.8
AUR62030079 Chenopodium quinoa HOM05D004860 ORTHO05D006366 9.6e-134 480.7 284 80.3
Cpa.g.sc16.26 Carica papaya HOM05D004860 ORTHO05D006366 1.1e-132 477.2 326 75.8
Lsat_1_v5_gn_7_67361 Lactuca sativa HOM05D004860 ORTHO05D006366 1.3e-130 470.3 325 72.3
Prupe.1G151200 Prunus persica HOM05D004860 ORTHO05D006366 3.2e-129 465.7 268 84.0
CiPaw.01G159800 Carya illinoinensis HOM05D004860 ORTHO05D006366 7.2e-129 464.5 327 72.2
Zm00001eb303280 Zea mays HOM05D004860 ORTHO05D006366 7.2e-129 464.5 343 69.4
Os07g0211800 Oryza sativa ssp. japonica HOM05D004860 ORTHO05D006366 2.7e-128 462.6 304 74.7
unitig_8.g2879 Utricularia gibba HOM05D004860 ORTHO05D006366 1.0e-127 460.7 310 72.6
Hund12197 Selenicereus undatus HOM05D004860 ORTHO05D000105 1.8e-127 459.9 272 80.1
Migut.G00288 Erythranthe guttata HOM05D004860 ORTHO05D006366 4.8e-125 451.8 324 70.7
AUR62038223 Chenopodium quinoa HOM05D004860 ORTHO05D006366 2.0e-123 446.4 270 78.9
Sabra08G0159200 Salix brachista HOM05D004860 ORTHO05D006366 7.7e-123 444.5 298 74.8
Lj6A565G28 Lonicera japonica HOM05D004860 ORTHO05D006366 1.2e-120 437.2 278 78.1
Dinv44480 Davidia involucrata HOM05D001530 ORTHO05D004168 3.0e-119 432.6 319 71.8
Actinidia12990 Actinidia chinensis HOM05D004860 ORTHO05D006366 2.0e-118 429.9 343 66.8
AagrBONN_evm.TU.Sc2ySwM_117.2400 Anthoceros agrestis HOM05D004860 ORTHO05D006366 2.6e-115 419.5 286 69.6
vmacro08274 Vaccinium macrocarpon HOM05D004860 ORTHO05D006366 3.4e-115 419.1 300 71.7
Mapoly0095s0018 Marchantia polymorpha HOM05D004860 ORTHO05D006366 1.4e-113 413.7 272 72.1
Pp3c4_4720 Physcomitrium patens HOM05D004860 ORTHO05D006366 3.2e-113 412.5 283 68.9
Rhsim04G0207200 Rhododendron simsii HOM05D004860 ORTHO05D006366 4.2e-113 412.1 317 67.8
SMO119G0283 Selaginella moellendorffii HOM05D004860 ORTHO05D006366 1.8e-111 406.8 287 69.0
TWI53G0789 Tripterygium wilfordii HOM05D004860 ORTHO05D006366 4.8e-109 398.7 260 75.8
Manes.03G184900 Manihot esculenta HOM05D004860 ORTHO05D006366 6.5e-106 388.3 271 73.8
ATR0626G115 Amborella trichopoda HOM05D004860 ORTHO05D006366 1.9e-105 386.7 254 74.8
Nn1g02160 Nelumbo nucifera HOM05D004860 ORTHO05D006366 4.2e-105 385.6 280 70.0
SGA_v2.0_scaffold166G38376 Striga asiatica HOM05D004860 ORTHO05D006366 1.7e-101 373.6 278 68.3
SalBow2G3077 Salvia bowleyana HOM05D004860 ORTHO05D006366 8.3e-93 344.7 310 59.0
Oeu017197.2 Olea europaea HOM05D004860 ORTHO05D006366 2.2e-90 336.7 228 74.1
VMungo1215G0515 Vigna mungo HOM05D004860 ORTHO05D006366 1.0e-82 311.2 218 73.4
Sc13g0003950 Simmondsia chinensis HOM05D004860 ORTHO05D006366 1.7e-82 310.5 217 73.7
Eucgr.B01143 Eucalyptus grandis HOM05D004860 ORTHO05D006366 2.9e-61 240.0 153 73.9
FAN17G0307 Fragaria x ananassa HOM05D004860 ORTHO05D006366 2.4e-60 236.9 139 79.9
SHI00370 Sapria himalayana HOM05D004860 ORTHO05D000023 1.0e-58 231.5 243 54.3
Actinidia23474 Actinidia chinensis HOM05D004860 ORTHO05D006366 6.6e-58 228.8 327 45.0
HPP92_027344 Vanilla planifolia HOM05D004860 ORTHO05D006366 3.3e-57 226.5 170 69.4
Nitab4.5_0002954g0030 Nicotiana tabacum HOM05D004860 ORTHO05D006366 5.2e-55 219.2 148 76.4
Hund22791 Selenicereus undatus HOM05D004860 ORTHO05D006366 1.1e-52 211.5 132 73.5
VMungo1215G0712 Vigna mungo HOM05D004860 ORTHO05D006366 2.1e-48 197.2 108 84.3
Cc02_g31730 Coffea canephora HOM05D004860 ORTHO05D006366 2.6e-46 190.3 108 79.6
PRCOL_00003006 Prasinoderma coloniale HOM05D004860 ORTHO05D006366 3.8e-37 159.8 272 40.8
CBR_g23274 Chara braunii HOM05D004860 ORTHO05D006366 5.4e-36 156.0 129 57.4
Cre06.g283034 Chlamydomonas reinhardtii HOM05D004860 ORTHO05D006366 3.0e-34 150.2 308 33.4
Cc09_g08330 Coffea canephora HOM05D004860 ORTHO05D006366 6.7e-34 149.1 112 64.3
Cc01_g03740 Coffea canephora HOM05D004860 ORTHO05D006366 3.8e-29 133.3 117 58.1
SHI00369 Sapria himalayana HOM05D004860 ORTHO05D006366 7.9e-27 125.6 161 48.4
DCAR_002416 Daucus carota HOM05D004860 ORTHO05D006366 2.1e-24 117.5 86 67.4
Cfa023854 Carpinus fangiana HOM05D004860 ORTHO05D126341 6.9e-23 112.5 296 31.8
Mapoly0174s0021 Marchantia polymorpha HOM05D004860 ORTHO05D006366 2.9e-21 107.1 87 58.6
HPP92_027343 Vanilla planifolia HOM05D004860 ORTHO05D006366 6.5e-21 105.9 71 70.4
A02p05180 Brassica napus HOM05D004860 ORTHO05D006366 4.2e-20 103.2 91 62.6
BraA02t05478Z Brassica rapa HOM05D004860 ORTHO05D006366 7.1e-20 102.4 93 63.4
THA.LOC104820105 Tarenaya hassleriana HOM05D001530 ORTHO05D004168 5.1e-18 96.3 53 90.6
Lj6C565T4 Lonicera japonica HOM05D004860 ORTHO05D006366 2.8e-16 90.5 53 75.5
CBR_g23273 Chara braunii HOM05D004860 ORTHO05D006366 8.2e-16 89.0 78 53.8
DCAR_030597 Daucus carota HOM05D004860 ORTHO05D006366 1.8e-15 87.8 52 80.8
Cc00_g00380 Coffea canephora HOM05D004860 ORTHO05D006366 1.0e-13 82.0 53 75.5
Cc11_g00440 Coffea canephora HOM05D004860 ORTHO05D005444 3.0e-10 70.5 40 80.0
HPP92_017189 Vanilla planifolia HOM05D004860 ORTHO05D006366 1.2e-06 58.5 31 83.9
BcaC04g22550 Brassica carinata HOM05D004619 ORTHO05D032420 4.5e-06 56.6 38 76.3
QL06p004359 Quercus lobata HOM05D004860 ORTHO05D337479 4.5e-06 56.6 55 60.0
Cc04_g14790 Coffea canephora HOM05D004860 ORTHO05D006366 5.9e-06 56.2 29 79.3


User provided reference genes

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