Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
BcaC04g18576 Brassica carinata HOM05D005221 ORTHO05D006355 3.8e-103 378.6 260 100.0
C09p56940 Brassica napus HOM05D005221 ORTHO05D006355 3.8e-103 378.6 260 100.0
A10p20340 Brassica napus HOM05D005221 ORTHO05D006355 2.1e-101 372.9 260 98.5
BolC9t58548H Brassica oleracea HOM05D005221 ORTHO05D006355 2.1e-101 372.9 260 94.6
BraA10t44105Z Brassica rapa HOM05D005221 ORTHO05D006355 2.1e-101 372.9 260 98.5
BcaB08g36581 Brassica carinata HOM05D005221 ORTHO05D006355 1.9e-78 296.6 261 87.7
BolC3t13571H Brassica oleracea HOM05D005221 ORTHO05D006355 7.9e-69 264.6 273 64.8
BcaB01g04866 Brassica carinata HOM05D005221 ORTHO05D006355 3.3e-67 259.2 267 73.4
C03p11020 Brassica napus HOM05D005221 ORTHO05D006355 5.7e-67 258.5 272 64.3
BraA03t10262Z Brassica rapa HOM05D005221 ORTHO05D006355 5.7e-67 258.5 273 66.3
A03p09440 Brassica napus HOM05D005221 ORTHO05D006355 1.7e-66 256.9 277 70.0
Thhalv10016073m.g Eutrema salsugineum HOM05D005221 ORTHO05D006355 8.5e-63 244.6 284 70.8
BcaB01g05141 Brassica carinata HOM05D005221 ORTHO05D006355 5.5e-62 241.9 270 61.9
Sp6g25070 Schrenkiella parvula HOM05D005221 ORTHO05D006355 3.3e-59 232.6 273 75.5
Carub.0006s1768 Capsella rubella HOM05D005221 ORTHO05D006355 6.3e-58 228.4 286 69.2
AT5G19340 Arabidopsis thaliana HOM05D005221 ORTHO05D006355 2.0e-56 223.4 272 72.4
AL6G30830 Arabidopsis lyrata HOM05D005221 ORTHO05D006355 7.2e-54 214.9 268 72.8
CARHR193620 Cardamine hirsuta HOM05D005221 ORTHO05D006355 8.8e-52 208.0 278 70.1
AL3G16790 Arabidopsis lyrata HOM05D005221 ORTHO05D006355 3.2e-46 189.5 275 51.6
Aa31LG5G16450 Aethionema arabicum HOM05D005221 ORTHO05D006355 4.7e-45 185.7 255 60.4
Carub.0003s0539 Capsella rubella HOM05D005221 ORTHO05D006355 4.7e-45 185.7 277 52.0
A05p42050 Brassica napus HOM05D005221 ORTHO05D006355 6.1e-45 185.3 251 54.6
AT3G05980 Arabidopsis thaliana HOM05D005221 ORTHO05D006355 3.0e-44 183.0 272 50.0
BcaC05g30072 Brassica carinata HOM05D005221 ORTHO05D006355 4.0e-44 182.6 255 52.5
BcaNung07026 Brassica carinata HOM05D005221 ORTHO05D006355 4.0e-44 182.6 176 73.9
C05p61280 Brassica napus HOM05D005221 ORTHO05D006355 5.2e-44 182.2 255 54.1
BolC5t34787H Brassica oleracea HOM05D005221 ORTHO05D006355 5.2e-44 182.2 255 54.1
BraA05t22925Z Brassica rapa HOM05D005221 ORTHO05D006355 6.7e-44 181.8 255 54.1
Thhalv10021379m.g Eutrema salsugineum HOM05D005221 ORTHO05D006355 8.8e-44 181.4 274 64.6
CARHR080490 Cardamine hirsuta HOM05D005221 ORTHO05D006355 2.0e-43 180.3 257 61.1
THA.LOC104802759 Tarenaya hassleriana HOM05D005221 ORTHO05D006355 2.0e-43 180.3 281 52.0
Sp3g04920 Schrenkiella parvula HOM05D005221 ORTHO05D006355 2.2e-42 176.8 274 60.6
BraA01t04457Z Brassica rapa HOM05D005221 ORTHO05D006355 8.2e-42 174.9 270 48.1
Prupe.1G155500 Prunus persica HOM05D005221 ORTHO05D006355 9.4e-38 161.4 272 49.6
FAN22G0945 Fragaria x ananassa HOM05D005221 ORTHO05D006355 2.1e-37 160.2 255 47.8
Manes.03G181200 Manihot esculenta HOM05D005221 ORTHO05D006355 2.1e-37 160.2 271 45.0
FvH4_4g15060 Fragaria vesca HOM05D005221 ORTHO05D006355 2.7e-37 159.8 265 47.2
FAN12G4146 Fragaria x ananassa HOM05D005221 ORTHO05D006355 3.6e-37 159.5 266 47.0
BcaC09g47869 Brassica carinata HOM05D005221 ORTHO05D006355 4.7e-37 159.1 267 49.1
Potri.010G090700 Populus trichocarpa HOM05D005221 ORTHO05D006355 6.1e-37 158.7 267 46.8
BolC1t05645H Brassica oleracea HOM05D005221 ORTHO05D006355 8.0e-37 158.3 267 46.4
QL06p003360 Quercus lobata HOM05D005221 ORTHO05D006355 8.0e-37 158.3 271 46.1
FAN07G2107 Fragaria x ananassa HOM05D005221 ORTHO05D006355 1.0e-36 157.9 274 45.3
Thecc.04G227300 Theobroma cacao HOM05D005221 ORTHO05D006355 1.8e-36 157.1 273 48.7
Nn4g26263 Nelumbo nucifera HOM05D005221 ORTHO05D006355 3.0e-36 156.4 248 44.8
MD16G1188800 Malus domestica HOM05D005221 ORTHO05D006355 1.2e-35 154.5 270 44.4
RcHm_v2.0_Chr4g0416801 Rosa chinensis HOM05D005221 ORTHO05D006355 1.5e-35 154.1 272 45.2
CSS0023930 Camellia sinensis var. sinensis HOM05D005221 ORTHO05D006355 5.7e-35 152.1 266 44.4
Sabra10G0052800 Salix brachista HOM05D005221 ORTHO05D006355 7.5e-35 151.8 279 45.2
THA.LOC104818779 Tarenaya hassleriana HOM05D005221 ORTHO05D006355 7.5e-35 151.8 261 47.9
TWI53G0458 Tripterygium wilfordii HOM05D005221 ORTHO05D006355 7.5e-35 151.8 282 44.7
Cpa.g.sc8.322 Carica papaya HOM05D005221 ORTHO05D006355 2.2e-34 150.2 271 48.0
Duzib151G0158 Durio zibethinus HOM05D005221 ORTHO05D006355 2.8e-34 149.8 261 45.2
Sed0008919 Sechium edule HOM05D005221 ORTHO05D006355 2.8e-34 149.8 255 45.1
Potri.008G150300 Populus trichocarpa HOM05D005221 ORTHO05D006355 3.7e-34 149.4 270 45.6
EL10As3g23360 Beta vulgaris HOM05D005221 ORTHO05D006355 6.3e-34 148.7 280 46.1
Oeu037551.1 Olea europaea HOM05D005221 ORTHO05D006355 8.3e-34 148.3 267 42.7
Sabra08G0114400 Salix brachista HOM05D005221 ORTHO05D006355 8.3e-34 148.3 270 44.8
Sed0012211 Sechium edule HOM05D005221 ORTHO05D006355 1.1e-33 147.9 258 44.6
MSTRG.21844 Avicennia marina HOM05D005221 ORTHO05D006355 1.8e-33 147.1 264 43.9
Manes.15G026700 Manihot esculenta HOM05D005221 ORTHO05D006355 2.4e-33 146.7 265 46.4
CAN.G668.8 Capsicum annuum HOM05D005221 ORTHO05D006355 5.4e-33 145.6 254 40.9
ECA234G2268 Erigeron canadensis HOM05D005221 ORTHO05D006355 5.4e-33 145.6 273 45.4
Cc03_g03470 Coffea canephora HOM05D005221 ORTHO05D006355 7.0e-33 145.2 266 42.1
Duzib212G0790 Durio zibethinus HOM05D005221 ORTHO05D006355 7.0e-33 145.2 283 44.5
MD13G1188400 Malus domestica HOM05D005221 ORTHO05D006355 1.2e-32 144.4 250 42.4
Sc19g0004310 Simmondsia chinensis HOM05D005221 ORTHO05D006355 1.2e-32 144.4 248 50.0
Ciclev10005615m.g Citrus clementina HOM05D005221 ORTHO05D006355 1.6e-32 144.1 275 48.0
Rhsim04G0205100 Rhododendron simsii HOM05D005221 ORTHO05D006355 1.6e-32 144.1 256 42.6
TWI09G0254 Tripterygium wilfordii HOM05D005221 ORTHO05D006355 1.6e-32 144.1 258 45.3
Glyma.10G249900 Glycine max HOM05D005221 ORTHO05D006355 2.0e-32 143.7 253 56.1
Nn1g02242 Nelumbo nucifera HOM05D005221 ORTHO05D006355 2.0e-32 143.7 253 45.1
Lj5g0028012 Lotus japonicus HOM05D005221 ORTHO05D006355 2.7e-32 143.3 241 45.6
Peaxi162Scf00642g00022 Petunia axillaris HOM05D005221 ORTHO05D006355 2.7e-32 143.3 267 43.8
ClCG06G006000 Citrullus lanatus HOM05D005221 ORTHO05D006355 4.5e-32 142.5 250 50.0
CAN.G873.5 Capsicum annuum HOM05D005221 ORTHO05D006355 5.9e-32 142.1 263 39.9
Cfa015617 Carpinus fangiana HOM05D005221 ORTHO05D006355 5.9e-32 142.1 270 47.4
Duzib052G0196 Durio zibethinus HOM05D005221 ORTHO05D006355 5.9e-32 142.1 264 39.4
TAR362G0899 Trochodendron aralioides HOM05D005221 ORTHO05D006355 5.9e-32 142.1 261 42.1
Actinidia23488 Actinidia chinensis HOM05D005221 ORTHO05D006355 7.7e-32 141.7 256 39.8
COL.COLO4_06196 Corchorus olitorius HOM05D005221 ORTHO05D006355 1.0e-31 141.4 285 40.7
Phvul.007G054700 Phaseolus vulgaris HOM05D005221 ORTHO05D006355 1.7e-31 140.6 252 54.4
Ca_10924_v3 Cicer arietinum L. HOM05D005221 ORTHO05D006355 2.3e-31 140.2 276 44.2
Gorai.006G237300 Gossypium raimondii HOM05D005221 ORTHO05D006355 2.3e-31 140.2 280 45.4
Medtr1g104840 Medicago truncatula HOM05D005221 ORTHO05D006355 2.3e-31 140.2 259 45.6
VMungo0720G0147 Vigna mungo HOM05D005221 ORTHO05D006355 2.3e-31 140.2 254 54.7
MELO3C014491.2 Cucumis melo HOM05D005221 ORTHO05D006355 3.8e-31 139.4 251 49.8
Glyma.20G143700 Glycine max HOM05D005221 ORTHO05D006355 3.8e-31 139.4 253 54.5
Nitab4.5_0001545g0020 Nicotiana tabacum HOM05D005221 ORTHO05D006355 5.0e-31 139.0 246 44.3
CiPaw.02G095300 Carya illinoinensis HOM05D005221 ORTHO05D006355 6.5e-31 138.7 278 43.9
Gohir.D09G216800 Gossypium hirsutum HOM05D005221 ORTHO05D006355 6.5e-31 138.7 280 45.0
Gohir.A09G214300 Gossypium hirsutum HOM05D005221 ORTHO05D006355 8.6e-31 138.3 280 47.5
CiPaw.01G163700 Carya illinoinensis HOM05D005221 ORTHO05D006355 1.1e-30 137.9 248 45.6
Solyc06g054280.1 Solanum lycopersicum HOM05D005221 ORTHO05D006355 1.9e-30 137.1 264 42.8
Sopen06g019400 Solanum pennellii HOM05D005221 ORTHO05D006355 1.9e-30 137.1 264 42.8
Nitab4.5_0000321g0080 Nicotiana tabacum HOM05D005221 ORTHO05D006355 3.3e-30 136.3 247 44.9
Aqoxy2G03348 Aquilegia oxysepala HOM05D005221 ORTHO05D006355 4.2e-30 136.0 254 41.7
Nitab4.5_0000260g0100 Nicotiana tabacum HOM05D005221 ORTHO05D006355 4.2e-30 136.0 243 44.4
PGR004G1499 Punica granatum HOM05D005221 ORTHO05D006355 4.2e-30 136.0 261 37.9
Peaxi162Scf00437g00052 Petunia axillaris HOM05D005221 ORTHO05D006355 7.2e-30 135.2 248 41.5
DCAR_030618 Daucus carota HOM05D005221 ORTHO05D006355 9.5e-30 134.8 244 41.4
Eucgr.B01092 Eucalyptus grandis HOM05D005221 ORTHO05D006355 1.6e-29 134.0 269 45.4
PGSC0003DMG400011822 Solanum tuberosum HOM05D005221 ORTHO05D006355 1.6e-29 134.0 264 42.4
TPR.G5529 Trifolium pratense HOM05D005221 ORTHO05D006355 1.6e-29 134.0 257 45.9
Sopen09g030550 Solanum pennellii HOM05D005221 ORTHO05D006355 1.4e-28 131.0 255 44.3
CsaV3_6G038280 Cucumis sativus L. HOM05D005221 ORTHO05D006355 2.3e-28 130.2 251 47.4
CANSAT78G1299 Cannabis sativa HOM05D005221 ORTHO05D006355 3.0e-28 129.8 285 49.8
Lj3P740T18 Lonicera japonica HOM05D005221 ORTHO05D006355 3.0e-28 129.8 255 44.3
Sc13g0004240 Simmondsia chinensis HOM05D005221 ORTHO05D006355 4.0e-28 129.4 280 38.9
Solyc09g075740.1 Solanum lycopersicum HOM05D005221 ORTHO05D006355 4.0e-28 129.4 255 43.1
PGSC0003DMG400031851 Solanum tuberosum HOM05D005221 ORTHO05D006355 8.9e-28 128.3 256 40.2
DCAR_002395 Daucus carota HOM05D005221 ORTHO05D006355 1.2e-27 127.9 263 39.5
Dinv38425 Davidia involucrata HOM05D005221 ORTHO05D006355 1.2e-27 127.9 198 49.0
PGR142G0441 Punica granatum HOM05D005221 ORTHO05D006355 2.6e-27 126.7 273 46.5
Lsat_1_v5_gn_5_148500 Lactuca sativa HOM05D005221 ORTHO05D006355 5.7e-27 125.6 250 42.0
SGA_v2.0_scaffold10G05107 Striga asiatica HOM05D005221 ORTHO05D006355 5.7e-27 125.6 246 48.8
Lalb_Chr06g0160581 Lupinus albus HOM05D005221 ORTHO05D006355 2.8e-26 123.2 270 49.6
Migut.N00171 Erythranthe guttata HOM05D005221 ORTHO05D006355 4.9e-26 122.5 268 39.2
MBI17_g31753_MAGBIO Magnolia biondii HOM05D005221 ORTHO05D006355 4.9e-26 122.5 239 35.6
TAR636G2071 Trochodendron aralioides HOM05D002203 ORTHO05D002647 1.4e-25 120.9 177 46.3
FAN17G2349 Fragaria x ananassa HOM05D005221 ORTHO05D006355 1.8e-25 120.6 267 36.0
Hma1.2p1_0511F.1_g168910 Hydrangea macrophylla HOM05D005221 ORTHO05D006355 1.8e-25 120.6 244 49.6
Aqoxy5G00503 Aquilegia oxysepala HOM05D005221 ORTHO05D006355 5.4e-25 119.0 228 48.2
HanXRQChr04g0110301 Helianthus annuus HOM05D005221 ORTHO05D006355 5.4e-25 119.0 248 42.3
DCAR_024599 Daucus carota HOM05D005221 ORTHO05D006355 1.6e-24 117.5 258 36.4
HanXRQChr10g0296561 Helianthus annuus HOM05D005221 ORTHO05D006355 1.6e-24 117.5 245 40.8
Nitab4.5_0007609g0020 Nicotiana tabacum HOM05D005221 ORTHO05D006355 1.3e-23 114.4 170 43.5
Oeu029026.1 Olea europaea HOM05D005221 ORTHO05D006355 7.3e-22 108.6 196 37.2
MSTRG.4014 Avicennia marina HOM05D005221 ORTHO05D006355 5.4e-17 92.4 269 32.0
Ah.04g154490 Amaranthus hybridus HOM05D005221 ORTHO05D006355 7.0e-17 92.0 232 44.4
Hma1.2p1_0995F.1_g245620 Hydrangea macrophylla HOM05D005221 ORTHO05D006355 6.0e-16 89.0 155 38.7
Lj6P597T84 Lonicera japonica HOM05D005221 ORTHO05D006355 6.0e-16 89.0 200 38.0
Atru.chr4.2515 Acer truncatum HOM05D005221 ORTHO05D006355 6.2e-13 79.0 258 40.3
PSO302G0248 Papaver somniferum HOM05D005221 ORTHO05D006355 3.1e-12 76.6 159 34.6
AUR62038640 Chenopodium quinoa HOM05D005221 ORTHO05D006355 1.5e-11 74.3 166 35.5
SGA_v2.0_scaffold237G43792 Striga asiatica HOM05D005221 ORTHO05D006355 1.7e-10 70.9 264 29.9
SGA_v2.0_scaffold39G15291 Striga asiatica HOM05D005221 ORTHO05D006355 3.7e-10 69.7 122 41.0
Nn5g28878 Nelumbo nucifera HOM05D005221 ORTHO05D006355 6.4e-10 68.9 98 46.9
BcaB01g04867 Brassica carinata HOM05D005221 ORTHO05D006355 7.0e-09 65.5 51 70.6
Psat6g208720 Pisum sativum HOM05D005221 ORTHO05D006355 2.1e-08 63.9 29 89.7
arahy.Tifrunner.gnm1.ann1.0RM5BV Arachis hypogaea HOM05D005221 ORTHO05D006355 4.6e-08 62.8 198 44.4
Nn3g20708 Nelumbo nucifera HOM05D005221 ORTHO05D006355 6.0e-08 62.4 98 43.9
AUR62038093 Chenopodium quinoa HOM05D005221 ORTHO05D006355 7.3e-06 55.5 148 39.9


User provided reference genes

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