Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
BcaC03g18565 Brassica carinata HOM05D005858 ORTHO05D006982 7.4e-92 340.5 170 100.0
C02p13870 Brassica napus HOM05D005858 ORTHO05D006982 1.7e-91 339.3 170 99.4
BolC2t07506H Brassica oleracea HOM05D005858 ORTHO05D006982 1.7e-91 339.3 170 99.4
A02p08210 Brassica napus HOM05D005858 ORTHO05D006982 2.5e-87 325.5 170 94.1
BraA02t05894Z Brassica rapa HOM05D005858 ORTHO05D006982 2.5e-87 325.5 170 94.1
BcaB05g22374 Brassica carinata HOM05D005858 ORTHO05D006982 5.0e-80 301.2 170 90.6
A10p15140 Brassica napus HOM05D005858 ORTHO05D006982 9.4e-79 297.0 170 85.9
BraA10t43597Z Brassica rapa HOM05D005858 ORTHO05D006982 9.4e-79 297.0 170 85.9
Thhalv10013683m.g Eutrema salsugineum HOM05D005858 ORTHO05D006982 1.2e-78 296.6 170 88.8
Sp6g19450 Schrenkiella parvula HOM05D005858 ORTHO05D006982 3.6e-78 295.0 170 89.4
CARHR271500 Cardamine hirsuta HOM05D005858 ORTHO05D006982 3.0e-77 292.0 172 89.5
BcaB08g36142 Brassica carinata HOM05D005858 ORTHO05D006982 4.0e-77 291.6 170 87.1
Carub.0008s1828 Capsella rubella HOM05D005858 ORTHO05D006982 5.2e-77 291.2 170 88.2
AT5G57770 Arabidopsis thaliana HOM05D005858 ORTHO05D006982 3.3e-76 288.5 170 88.2
AL8G33800 Arabidopsis lyrata HOM05D005858 ORTHO05D006982 1.7e-75 286.2 170 87.6
BcaC04g19930 Brassica carinata HOM05D005858 ORTHO05D006982 5.3e-74 281.2 170 82.9
BolC9t57817H Brassica oleracea HOM05D005858 ORTHO05D006982 5.3e-74 281.2 170 82.9
C09p49650 Brassica napus HOM05D005858 ORTHO05D006982 6.1e-70 267.7 152 86.2
Aa31LG3G13600 Aethionema arabicum HOM05D005858 ORTHO05D006982 1.5e-68 263.1 167 79.6
BcaB05g22372 Brassica carinata HOM05D005858 ORTHO05D006982 1.3e-67 260.0 171 81.9
BcaB08g36140 Brassica carinata HOM05D005858 ORTHO05D006982 3.2e-63 245.4 160 77.5
THA.LOC104817811 Tarenaya hassleriana HOM05D005858 ORTHO05D006982 1.7e-51 206.5 165 68.5
QL02p095637 Quercus lobata HOM05D005858 ORTHO05D006982 5.0e-48 194.9 166 62.7
Duzib187G2004 Durio zibethinus HOM05D005858 ORTHO05D006982 1.1e-47 193.7 166 62.0
COL.COLO4_04533 Corchorus olitorius HOM05D005858 ORTHO05D006982 7.3e-47 191.0 166 62.7
Thecc.09G160700 Theobroma cacao HOM05D005858 ORTHO05D006982 6.2e-46 188.0 166 60.8
Cfa013549 Carpinus fangiana HOM05D005858 ORTHO05D006982 3.1e-45 185.7 166 59.0
Gorai.012G096000 Gossypium raimondii HOM05D005858 ORTHO05D006982 1.5e-44 183.3 165 60.6
Lalb_Chr12g0199051 Lupinus albus HOM05D005858 ORTHO05D006982 2.0e-44 183.0 162 59.9
Duzib168G1554 Durio zibethinus HOM05D005858 ORTHO05D006982 5.8e-44 181.4 166 59.6
Gohir.D04G086000 Gossypium hirsutum HOM05D005858 ORTHO05D006982 7.5e-44 181.0 165 60.6
Atru.chr7.494 Acer truncatum HOM05D005858 ORTHO05D006982 1.7e-43 179.9 169 58.0
Gohir.A05G345842 Gossypium hirsutum HOM05D005858 ORTHO05D006982 1.7e-43 179.9 165 59.4
Medtr4g129510 Medicago truncatula HOM05D005858 ORTHO05D006982 1.7e-43 179.9 166 57.8
VMungo1215G2346 Vigna mungo HOM05D005858 ORTHO05D006982 4.9e-43 178.3 166 57.8
Manes.06G025900 Manihot esculenta HOM05D005858 ORTHO05D006982 6.4e-43 177.9 167 58.7
PGR142G1620 Punica granatum HOM05D005858 ORTHO05D006982 6.4e-43 177.9 173 57.8
Potri.018G099000 Populus trichocarpa HOM05D005858 ORTHO05D006982 1.1e-42 177.2 166 59.6
CiPaw.08G040300 Carya illinoinensis HOM05D005858 ORTHO05D006982 1.9e-42 176.4 166 57.2
Sabra18G0085500 Salix brachista HOM05D005858 ORTHO05D006982 1.9e-42 176.4 166 59.0
Glyma.13G091600 Glycine max HOM05D005858 ORTHO05D006982 4.1e-42 175.3 166 55.4
TWI32G1032 Tripterygium wilfordii HOM05D005858 ORTHO05D006982 4.1e-42 175.3 170 58.2
Phvul.003G151200 Phaseolus vulgaris HOM05D005858 ORTHO05D006982 7.0e-42 174.5 166 55.4
TPR.G5337 Trifolium pratense HOM05D005858 ORTHO05D006982 1.6e-41 173.3 166 54.2
Glyma.17G068700 Glycine max HOM05D005858 ORTHO05D006982 4.6e-41 171.8 166 55.4
Gohir.A08G096524 Gossypium hirsutum HOM05D005858 ORTHO05D006982 7.8e-41 171.0 163 58.3
Ciclev10008554m.g Citrus clementina HOM05D005858 ORTHO05D006982 1.0e-40 170.6 169 55.6
Lj4g0010700 Lotus japonicus HOM05D005858 ORTHO05D006982 1.0e-40 170.6 166 54.8
Psat0s235g0040 Pisum sativum HOM05D005858 ORTHO05D006982 1.0e-40 170.6 166 54.2
Gohir.D08G097150 Gossypium hirsutum HOM05D005858 ORTHO05D006982 1.7e-40 169.9 166 57.2
Gorai.004G103900 Gossypium raimondii HOM05D005858 ORTHO05D006982 1.7e-40 169.9 166 56.6
Prupe.1G097500 Prunus persica HOM05D005858 ORTHO05D006982 1.7e-40 169.9 168 55.4
Ca_21182_v3 Cicer arietinum L. HOM05D005858 ORTHO05D006982 2.3e-40 169.5 167 54.5
FAN12G2910 Fragaria x ananassa HOM05D005858 ORTHO05D006982 5.6e-39 164.9 166 56.0
Eucgr.C00211 Eucalyptus grandis HOM05D005858 ORTHO05D006982 9.5e-39 164.1 169 55.0
GSVIVG01023724001 Vitis vinifera HOM05D005858 ORTHO05D006982 1.6e-38 163.3 169 55.0
GSVIVG01023744001 Vitis vinifera HOM05D005858 ORTHO05D006982 1.6e-38 163.3 169 55.0
FvH4_4g09670 Fragaria vesca HOM05D005858 ORTHO05D006982 2.1e-38 162.9 166 55.4
FAN12G2717 Fragaria x ananassa HOM05D005858 ORTHO05D006982 2.1e-38 162.9 166 55.4
FAN22G1041 Fragaria x ananassa HOM05D005858 ORTHO05D006982 3.6e-38 162.2 166 55.4
FAN07G0488 Fragaria x ananassa HOM05D005858 ORTHO05D006982 1.1e-37 160.6 166 54.2
Cc06_g14020 Coffea canephora HOM05D005858 ORTHO05D006982 2.3e-37 159.5 169 53.8
Actinidia20954 Actinidia chinensis HOM05D005858 ORTHO05D006982 3.1e-37 159.1 170 56.5
RcHm_v2.0_Chr4g0404961 Rosa chinensis HOM05D005858 ORTHO05D006982 3.1e-37 159.1 166 53.6
MD13G1260700 Malus domestica HOM05D005858 ORTHO05D006982 5.2e-37 158.3 167 52.7
FAN17G1719 Fragaria x ananassa HOM05D005858 ORTHO05D006982 1.2e-36 157.1 166 54.2
Oeu035673.1 Olea europaea HOM05D005858 ORTHO05D006982 9.8e-36 154.1 168 54.2
TAR383G0158 Trochodendron aralioides HOM05D005858 ORTHO05D006982 6.4e-35 151.4 169 52.1
Peaxi162Scf00525g00820 Petunia axillaris HOM05D005858 ORTHO05D006982 1.1e-34 150.6 167 53.3
Migut.J01417 Erythranthe guttata HOM05D005858 ORTHO05D006982 3.2e-34 149.1 169 51.5
CANSAT11G0936 Cannabis sativa HOM05D005858 ORTHO05D006982 4.1e-34 148.7 155 53.5
Nn8g40237 Nelumbo nucifera HOM05D005858 ORTHO05D006982 1.2e-33 147.1 169 50.9
PGSC0003DMG400011172 Solanum tuberosum HOM05D005858 ORTHO05D006982 1.6e-33 146.7 169 52.1
Sopen07g002410 Solanum pennellii HOM05D005858 ORTHO05D006982 2.7e-33 146.0 169 51.5
DCAR_017943 Daucus carota HOM05D005858 ORTHO05D006982 3.5e-33 145.6 173 53.2
CAN.G1870.1 Capsicum annuum HOM05D005858 ORTHO05D006982 4.6e-33 145.2 169 50.3
Dinv41306 Davidia involucrata HOM05D005858 ORTHO05D006982 6.0e-33 144.8 175 52.6
SalBow6G6404 Salvia bowleyana HOM05D005858 ORTHO05D006982 2.3e-32 142.9 169 49.7
Sc08g0005620 Simmondsia chinensis HOM05D005858 ORTHO05D006982 9.5e-31 137.5 163 52.8
EL10Ac8g18869 Beta vulgaris HOM05D005858 ORTHO05D006982 2.8e-30 136.0 171 50.3
ClCG06G012900 Citrullus lanatus HOM05D005858 ORTHO05D006982 2.8e-30 136.0 162 46.9
Aqoxy7G03242 Aquilegia oxysepala HOM05D005858 ORTHO05D006982 6.2e-30 134.8 169 49.1
Hund08985 Selenicereus undatus HOM05D005858 ORTHO05D006982 3.1e-29 132.5 173 50.9
AUR62039752 Chenopodium quinoa HOM05D005858 ORTHO05D006982 6.8e-29 131.3 157 51.6
Hund26407 Selenicereus undatus HOM05D005858 ORTHO05D006982 8.9e-29 131.0 170 50.0
CSS0006326 Camellia sinensis var. sinensis HOM05D005858 ORTHO05D006982 1.2e-28 130.6 169 49.7
AUR62028410 Chenopodium quinoa HOM05D005858 ORTHO05D006982 1.2e-28 130.6 157 51.6
Rhsim01G0012300 Rhododendron simsii HOM05D005858 ORTHO05D006982 2.6e-28 129.4 167 49.1
Sed0010370 Sechium edule HOM05D005858 ORTHO05D006982 2.6e-28 129.4 158 49.4
CsaV3_1G029470 Cucumis sativus L. HOM05D005858 ORTHO05D006982 3.4e-28 129.0 162 46.3
ECA234G1989 Erigeron canadensis HOM05D005858 ORTHO05D006982 4.4e-28 128.6 170 48.8
Nn2g12544 Nelumbo nucifera HOM05D005858 ORTHO05D006982 4.4e-28 128.6 169 45.0
Sed0010280 Sechium edule HOM05D005858 ORTHO05D006982 4.4e-28 128.6 161 44.7
Hund08986 Selenicereus undatus HOM05D005858 ORTHO05D006982 5.8e-28 128.3 171 49.1
SGA_v2.0_scaffold66G22516 Striga asiatica HOM05D005858 ORTHO05D006982 5.8e-28 128.3 169 47.9
HanXRQChr12g0358041 Helianthus annuus HOM05D005858 ORTHO05D006982 9.9e-28 127.5 162 46.9
HanXRQChr10g0306461 Helianthus annuus HOM05D005858 ORTHO05D006982 2.2e-27 126.3 173 44.5
Lsat_1_v5_gn_5_87041 Lactuca sativa HOM05D005858 ORTHO05D006982 4.9e-27 125.2 168 47.0
PSO782G0888 Papaver somniferum HOM05D005858 ORTHO05D006982 6.4e-27 124.8 169 47.3
arahy.Tifrunner.gnm1.ann1.TG9B3Q Arachis hypogaea HOM05D005858 ORTHO05D006982 2.7e-25 119.4 172 45.3
MELO3C010169.2 Cucumis melo HOM05D005858 ORTHO05D006982 2.7e-25 119.4 154 46.8
MD16G1262400 Malus domestica HOM05D005858 ORTHO05D006982 3.9e-24 115.5 175 42.9
Haze_22170 Corylus avellana HOM05D005858 ORTHO05D006982 5.1e-24 115.2 130 50.8
Cpa.g.sc75.19 Carica papaya HOM05D005858 ORTHO05D006982 9.6e-23 110.9 90 66.7
Lj9A728G21 Lonicera japonica HOM05D005858 ORTHO05D006982 1.6e-22 110.2 166 44.0
Nitab4.5_0005551g0040 Nicotiana tabacum HOM05D005858 ORTHO05D006982 2.8e-22 109.4 166 43.4
Dinv42786 Davidia involucrata HOM05D005858 ORTHO05D006982 1.4e-21 107.1 172 43.6
Dinv43315 Davidia involucrata HOM05D005858 ORTHO05D006982 1.4e-21 107.1 172 43.6
Lalb_Chr07g0180091 Lupinus albus HOM05D005858 ORTHO05D006982 1.4e-21 107.1 104 55.8
Nitab4.5_0005985g0060 Nicotiana tabacum HOM05D005858 ORTHO05D006982 2.2e-19 99.8 166 41.6
MBI14_g08081_MAGBIO Magnolia biondii HOM05D005858 ORTHO05D006982 7.1e-18 94.7 170 40.0
ATR0580G055 Amborella trichopoda HOM05D005858 ORTHO05D006982 1.5e-15 87.0 175 37.1
Zm00001eb425800 Zea mays HOM05D005858 ORTHO05D006982 3.6e-14 82.4 167 33.5
arahy.Tifrunner.gnm1.ann1.67VYHR Arachis hypogaea HOM05D005858 ORTHO05D006982 7.9e-09 64.7 81 48.1
Aqoxy5G02254 Aquilegia oxysepala HOM05D005858 ORTHO05D006982 3.9e-08 62.4 144 31.9
Lalb_Chr18g0049841 Lupinus albus HOM05D005858 ORTHO05D006982 3.9e-08 62.4 56 60.7
Ah.09g229510 Amaranthus hybridus HOM05D005858 ORTHO05D006982 4.8e-06 55.5 63 54.0


User provided reference genes

Program Settings