Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
BcaC03g18564 Brassica carinata HOM05D005858 ORTHO05D006982 9.5e-39 162.9 76 100.0
C02p13870 Brassica napus HOM05D005858 ORTHO05D006982 9.5e-39 162.9 76 100.0
BolC2t07506H Brassica oleracea HOM05D005858 ORTHO05D006982 9.5e-39 162.9 76 100.0
BcaB05g22374 Brassica carinata HOM05D005858 ORTHO05D006982 4.7e-38 160.6 76 97.4
A02p08210 Brassica napus HOM05D005858 ORTHO05D006982 6.1e-38 160.2 76 98.7
BraA02t05894Z Brassica rapa HOM05D005858 ORTHO05D006982 6.1e-38 160.2 76 98.7
BcaB08g36142 Brassica carinata HOM05D005858 ORTHO05D006982 2.3e-32 141.7 75 88.0
Sp6g19450 Schrenkiella parvula HOM05D005858 ORTHO05D006982 5.6e-31 137.1 76 88.2
Thhalv10013683m.g Eutrema salsugineum HOM05D005858 ORTHO05D006982 2.8e-30 134.8 75 84.0
BcaB08g36140 Brassica carinata HOM05D005858 ORTHO05D006982 8.0e-30 133.3 71 87.3
BcaC04g19930 Brassica carinata HOM05D005858 ORTHO05D006982 8.0e-30 133.3 71 87.3
BolC9t57817H Brassica oleracea HOM05D005858 ORTHO05D006982 8.0e-30 133.3 71 87.3
A10p15140 Brassica napus HOM05D005858 ORTHO05D006982 2.6e-28 128.3 73 83.6
BraA10t43597Z Brassica rapa HOM05D005858 ORTHO05D006982 2.6e-28 128.3 73 83.6
C09p49650 Brassica napus HOM05D005858 ORTHO05D006982 3.4e-28 127.9 67 88.1
CARHR271500 Cardamine hirsuta HOM05D005858 ORTHO05D006982 4.4e-28 127.5 75 80.0
AL8G33800 Arabidopsis lyrata HOM05D005858 ORTHO05D006982 2.9e-27 124.8 75 82.7
AT5G57770 Arabidopsis thaliana HOM05D005858 ORTHO05D006982 2.9e-27 124.8 75 82.7
Carub.0008s1828 Capsella rubella HOM05D005858 ORTHO05D006982 3.2e-26 121.3 75 78.7
Aa31LG3G13600 Aethionema arabicum HOM05D005858 ORTHO05D006982 1.1e-23 112.8 76 75.0
THA.LOC104817811 Tarenaya hassleriana HOM05D005858 ORTHO05D006982 2.1e-14 82.0 69 59.4
Ciclev10008554m.g Citrus clementina HOM05D005858 ORTHO05D006982 3.1e-13 78.2 58 63.8
COL.COLO4_04533 Corchorus olitorius HOM05D005858 ORTHO05D006982 1.2e-12 76.3 50 66.0
Thecc.09G160700 Theobroma cacao HOM05D005858 ORTHO05D006982 4.4e-12 74.3 53 60.4
Duzib187G2004 Durio zibethinus HOM05D005858 ORTHO05D006982 2.2e-11 72.0 54 59.3
Atru.chr7.494 Acer truncatum HOM05D005858 ORTHO05D006982 8.4e-11 70.1 54 55.6
Duzib168G1554 Durio zibethinus HOM05D005858 ORTHO05D006982 8.4e-11 70.1 53 58.5
Cpa.g.sc75.19 Carica papaya HOM05D005858 ORTHO05D006982 5.4e-10 67.4 54 55.6
Gohir.A08G096524 Gossypium hirsutum HOM05D005858 ORTHO05D006982 1.2e-09 66.2 56 57.1
Gohir.D04G086000 Gossypium hirsutum HOM05D005858 ORTHO05D006982 1.6e-09 65.9 54 53.7
Gohir.D08G097150 Gossypium hirsutum HOM05D005858 ORTHO05D006982 1.6e-09 65.9 56 55.4
Gorai.004G103900 Gossypium raimondii HOM05D005858 ORTHO05D006982 1.6e-09 65.9 56 55.4
CiPaw.08G040300 Carya illinoinensis HOM05D005858 ORTHO05D006982 2.1e-09 65.5 51 54.9
Oeu035673.1 Olea europaea HOM05D005858 ORTHO05D006982 2.1e-09 65.5 53 60.4
Gohir.A05G345842 Gossypium hirsutum HOM05D005858 ORTHO05D006982 2.7e-09 65.1 53 52.8
Gorai.012G096000 Gossypium raimondii HOM05D005858 ORTHO05D006982 2.7e-09 65.1 53 54.7
MD13G1260700 Malus domestica HOM05D005858 ORTHO05D006982 2.7e-09 65.1 48 58.3
Prupe.1G097500 Prunus persica HOM05D005858 ORTHO05D006982 3.5e-09 64.7 49 57.1
GSVIVG01023744001 Vitis vinifera HOM05D005858 ORTHO05D006982 3.5e-09 64.7 50 56.0
Potri.018G099000 Populus trichocarpa HOM05D005858 ORTHO05D006982 4.6e-09 64.3 55 52.7
Sabra18G0085500 Salix brachista HOM05D005858 ORTHO05D006982 4.6e-09 64.3 55 52.7
FAN22G1041 Fragaria x ananassa HOM05D005858 ORTHO05D006982 6.0e-09 63.9 51 58.8
FvH4_4g09670 Fragaria vesca HOM05D005858 ORTHO05D006982 1.0e-08 63.2 52 55.8
FAN07G0488 Fragaria x ananassa HOM05D005858 ORTHO05D006982 1.0e-08 63.2 51 60.8
FAN12G2717 Fragaria x ananassa HOM05D005858 ORTHO05D006982 1.0e-08 63.2 52 55.8
RcHm_v2.0_Chr4g0404961 Rosa chinensis HOM05D005858 ORTHO05D006982 1.0e-08 63.2 51 56.9
FAN12G2910 Fragaria x ananassa HOM05D005858 ORTHO05D006982 3.0e-08 61.6 52 53.8
Solyc07g006320.4 Solanum lycopersicum HOM05D005858 ORTHO05D006982 3.0e-08 61.6 48 56.2
Sopen07g002410 Solanum pennellii HOM05D005858 ORTHO05D006982 3.0e-08 61.6 48 56.2
Actinidia20954 Actinidia chinensis HOM05D005858 ORTHO05D006982 3.9e-08 61.2 49 59.2
Hma1.2p1_1531F.1_g289239 Hydrangea macrophylla HOM05D005858 ORTHO05D006982 3.9e-08 61.2 48 56.2
PGSC0003DMG400011172 Solanum tuberosum HOM05D005858 ORTHO05D006982 3.9e-08 61.2 54 50.0
Peaxi162Scf00525g00820 Petunia axillaris HOM05D005858 ORTHO05D006982 5.1e-08 60.8 48 54.2
Hund08985 Selenicereus undatus HOM05D005858 ORTHO05D006982 5.1e-08 60.8 52 51.9
GSVIVG01023724001 Vitis vinifera HOM05D005858 ORTHO05D006982 6.6e-08 60.5 50 54.0
FAN17G1719 Fragaria x ananassa HOM05D005858 ORTHO05D006982 1.1e-07 59.7 51 54.9
SalBow6G6404 Salvia bowleyana HOM05D005858 ORTHO05D006982 1.1e-07 59.7 51 52.9
Eucgr.C00211 Eucalyptus grandis HOM05D005858 ORTHO05D006982 1.5e-07 59.3 56 46.4
Hund08986 Selenicereus undatus HOM05D005858 ORTHO05D006982 1.5e-07 59.3 51 54.9
Cc06_g14020 Coffea canephora HOM05D005858 ORTHO05D006982 1.9e-07 58.9 50 50.0
Migut.J01417 Erythranthe guttata HOM05D005858 ORTHO05D006982 1.9e-07 58.9 52 50.0
Lalb_Chr12g0199051 Lupinus albus HOM05D005858 ORTHO05D006982 1.9e-07 58.9 31 77.4
CSS0006326 Camellia sinensis var. sinensis HOM05D005858 ORTHO05D006982 3.3e-07 58.2 54 51.9
CAN.G1870.1 Capsicum annuum HOM05D005858 ORTHO05D006982 3.3e-07 58.2 48 54.2
Nitab4.5_0005985g0060 Nicotiana tabacum HOM05D005858 ORTHO05D006982 3.3e-07 58.2 48 52.1
Dinv42786 Davidia involucrata HOM05D005858 ORTHO05D006982 4.3e-07 57.8 46 60.9
Dinv43315 Davidia involucrata HOM05D005858 ORTHO05D006982 4.3e-07 57.8 46 60.9
MELO3C010169.2 Cucumis melo HOM05D005858 ORTHO05D006982 5.6e-07 57.4 53 49.1
TWI32G1032 Tripterygium wilfordii HOM05D005858 ORTHO05D006982 5.6e-07 57.4 43 60.5
Ah.09g229510 Amaranthus hybridus HOM05D005858 ORTHO05D006982 7.3e-07 57.0 44 56.8
Ca_21182_v3 Cicer arietinum L. HOM05D005858 ORTHO05D006982 7.3e-07 57.0 49 53.1
Nitab4.5_0005551g0040 Nicotiana tabacum HOM05D005858 ORTHO05D006982 7.3e-07 57.0 59 45.8
CANSAT11G0936 Cannabis sativa HOM05D005858 ORTHO05D006982 9.6e-07 56.6 32 78.1
Cfa013549 Carpinus fangiana HOM05D005858 ORTHO05D006982 9.6e-07 56.6 53 47.2
Haze_22170 Corylus avellana HOM05D005858 ORTHO05D006982 1.2e-06 56.2 53 47.2
QL02p095637 Quercus lobata HOM05D005858 ORTHO05D006982 1.6e-06 55.8 43 55.8
Glyma.13G091600 Glycine max HOM05D005858 ORTHO05D006982 2.1e-06 55.5 30 76.7
Glyma.17G068700 Glycine max HOM05D005858 ORTHO05D006982 2.1e-06 55.5 30 76.7
TPR.G5337 Trifolium pratense HOM05D005858 ORTHO05D006982 2.1e-06 55.5 49 51.0
VMungo1215G2346 Vigna mungo HOM05D005858 ORTHO05D006982 2.1e-06 55.5 30 76.7
Lj4g0010700 Lotus japonicus HOM05D005858 ORTHO05D006982 2.8e-06 55.1 32 71.9
Dinv41306 Davidia involucrata HOM05D005858 ORTHO05D006982 3.6e-06 54.7 40 62.5
EL10Ac8g18869 Beta vulgaris HOM05D005858 ORTHO05D006982 4.7e-06 54.3 40 62.5
ClCG06G012900 Citrullus lanatus HOM05D005858 ORTHO05D006982 4.7e-06 54.3 32 71.9
Medtr4g129510 Medicago truncatula HOM05D005858 ORTHO05D006982 6.2e-06 53.9 30 73.3
Psat0s235g0040 Pisum sativum HOM05D005858 ORTHO05D006982 6.2e-06 53.9 30 73.3
Lalb_Chr07g0180081 Lupinus albus HOM05D005858 ORTHO05D006982 8.1e-06 53.5 47 57.4
Phvul.003G151200 Phaseolus vulgaris HOM05D005858 ORTHO05D006982 8.1e-06 53.5 30 73.3
Sed0010370 Sechium edule HOM05D005858 ORTHO05D006982 8.1e-06 53.5 58 50.0
Hund26407 Selenicereus undatus HOM05D005858 ORTHO05D006982 8.1e-06 53.5 48 47.9


User provided reference genes

Program Settings