Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
BcaC03g18478 Brassica carinata HOM05D003588 ORTHO05D004252 1.7e-48 195.7 100 100.0
BcaC03g18481 Brassica carinata HOM05D003588 ORTHO05D004252 1.7e-48 195.7 100 100.0
BcaNung02226 Brassica carinata HOM05D003588 ORTHO05D004252 1.7e-48 195.7 100 100.0
BcaC03g18474 Brassica carinata HOM05D003588 ORTHO05D004252 8.1e-46 186.8 101 97.0
A02p03430 Brassica napus HOM05D003588 ORTHO05D004252 8.1e-46 186.8 101 97.0
C02p08190 Brassica napus HOM05D003588 ORTHO05D004252 8.1e-46 186.8 101 97.0
BolC2t06743H Brassica oleracea HOM05D003588 ORTHO05D004252 8.1e-46 186.8 101 97.0
BraA02t05314Z Brassica rapa HOM05D003588 ORTHO05D004252 8.1e-46 186.8 101 97.0
Thhalv10012470m.g Eutrema salsugineum HOM05D003588 ORTHO05D004252 5.4e-42 174.1 100 90.0
Sp6g27950 Schrenkiella parvula HOM05D003588 ORTHO05D004252 2.1e-41 172.2 100 90.0
BcaC04g18898 Brassica carinata HOM05D003588 ORTHO05D004252 2.7e-41 171.8 100 88.0
C09p60810 Brassica napus HOM05D003588 ORTHO05D004252 2.7e-41 171.8 100 88.0
BolC9t58921H Brassica oleracea HOM05D003588 ORTHO05D004252 2.7e-41 171.8 100 88.0
AL6G27090 Arabidopsis lyrata HOM05D003588 ORTHO05D004252 1.1e-39 166.4 100 86.0
CARHR197100 Cardamine hirsuta HOM05D003588 ORTHO05D004252 1.9e-39 165.6 100 87.0
Carub.0006s1440 Capsella rubella HOM05D003588 ORTHO05D004252 5.2e-37 157.5 94 85.1
AT5G16210 Arabidopsis thaliana HOM05D003588 ORTHO05D004252 5.8e-36 154.1 100 83.0
Aa31LG11G13400 Aethionema arabicum HOM05D003588 ORTHO05D004252 5.1e-32 141.0 97 78.4
Sabra04G0065000 Salix brachista HOM05D003588 ORTHO05D004252 6.6e-24 114.0 97 69.1
AUR62023267 Chenopodium quinoa HOM05D003588 ORTHO05D004252 8.7e-24 113.6 96 66.7
GSVIVG01030980001 Vitis vinifera HOM05D003588 ORTHO05D004252 4.3e-23 111.3 95 65.3
AUR62009038 Chenopodium quinoa HOM05D003588 ORTHO05D004252 5.6e-23 110.9 96 66.7
Potri.004G095900 Populus trichocarpa HOM05D003588 ORTHO05D004252 5.6e-23 110.9 97 67.0
PGR004G1031 Punica granatum HOM05D003588 ORTHO05D004252 5.6e-23 110.9 94 63.8
Dinv33964 Davidia involucrata HOM05D003588 ORTHO05D004252 1.3e-22 109.8 96 62.5
EL10Ac2g04530 Beta vulgaris HOM05D003588 ORTHO05D004252 1.6e-22 109.4 96 66.7
A10p22850 Brassica napus HOM05D003588 ORTHO05D004252 1.6e-22 109.4 63 85.7
BraA10t44352Z Brassica rapa HOM05D003588 ORTHO05D004252 1.6e-22 109.4 63 85.7
Glyma.02G089000 Glycine max HOM05D003588 ORTHO05D004252 2.8e-22 108.6 94 66.0
Rhsim10G0072600 Rhododendron simsii HOM05D003588 ORTHO05D004252 2.8e-22 108.6 96 58.3
CiPaw.04G044200 Carya illinoinensis HOM05D003588 ORTHO05D004252 3.6e-22 108.2 94 62.8
Eucgr.F02790 Eucalyptus grandis HOM05D003588 ORTHO05D004252 3.6e-22 108.2 96 62.5
Ah.10g037630 Amaranthus hybridus HOM05D003588 ORTHO05D004252 6.2e-22 107.5 96 63.5
QL02p050347 Quercus lobata HOM05D003588 ORTHO05D004252 6.2e-22 107.5 98 61.2
QL04p012047 Quercus lobata HOM05D003588 ORTHO05D004252 6.2e-22 107.5 98 61.2
Solyc02g086320.1 Solanum lycopersicum HOM05D003588 ORTHO05D004252 1.1e-21 106.7 97 60.8
Sopen02g031000 Solanum pennellii HOM05D003588 ORTHO05D004252 1.1e-21 106.7 97 60.8
CANSAT78G2002 Cannabis sativa HOM05D003588 ORTHO05D004252 1.4e-21 106.3 95 61.1
Phvul.008G008300 Phaseolus vulgaris HOM05D003588 ORTHO05D004252 1.4e-21 106.3 93 61.3
vmacro05528 Vaccinium macrocarpon HOM05D003588 ORTHO05D004252 1.8e-21 105.9 96 59.4
vmacro22953 Vaccinium macrocarpon HOM05D003588 ORTHO05D004252 1.8e-21 105.9 96 59.4
Cpa.g.sc170.32 Carica papaya HOM05D003588 ORTHO05D004252 3.1e-21 105.1 86 65.1
Duzib133G0570 Durio zibethinus HOM05D003588 ORTHO05D004252 4.0e-21 104.8 96 65.6
Hund16184 Selenicereus undatus HOM05D003588 ORTHO05D004252 4.0e-21 104.8 96 62.5
TWI53G1720 Tripterygium wilfordii HOM05D003588 ORTHO05D004252 5.3e-21 104.4 96 62.5
VMungo1383G2782 Vigna mungo HOM05D003588 ORTHO05D004252 5.3e-21 104.4 93 60.2
Duzib138G1780 Durio zibethinus HOM05D003588 ORTHO05D004252 9.0e-21 103.6 96 65.6
Thecc.04G128900 Theobroma cacao HOM05D003588 ORTHO05D004252 9.0e-21 103.6 96 63.5
Nitab4.5_0008521g0020 Nicotiana tabacum HOM05D003588 ORTHO05D004252 1.5e-20 102.8 97 58.8
THA.LOC104820941 Tarenaya hassleriana HOM05D003588 ORTHO05D004252 1.5e-20 102.8 89 67.4
Ca_08090_v3 Cicer arietinum L. HOM05D003588 ORTHO05D004252 2.0e-20 102.4 89 61.8
Nitab4.5_0000753g0220 Nicotiana tabacum HOM05D003588 ORTHO05D004252 2.0e-20 102.4 97 58.8
COL.COLO4_09374 Corchorus olitorius HOM05D003588 ORTHO05D004252 2.6e-20 102.1 96 64.6
Medtr7g082650 Medicago truncatula HOM05D003588 ORTHO05D004252 4.5e-20 101.3 93 57.0
TPR.G16544 Trifolium pratense HOM05D003588 ORTHO05D004252 5.8e-20 100.9 93 59.1
Cfa007893 Carpinus fangiana HOM05D003588 ORTHO05D004252 9.9e-20 100.1 88 62.5
Gohir.A07G174400 Gossypium hirsutum HOM05D003588 ORTHO05D004252 9.9e-20 100.1 96 64.6
Lj1g0020363 Lotus japonicus HOM05D003588 ORTHO05D004252 9.9e-20 100.1 93 58.1
Lj4C184G4 Lonicera japonica HOM05D003588 ORTHO05D004252 1.7e-19 99.4 99 55.6
Nn4g23954 Nelumbo nucifera HOM05D003588 ORTHO05D004252 2.2e-19 99.0 94 59.6
Atru.chr1.1617 Acer truncatum HOM05D003588 ORTHO05D004252 2.9e-19 98.6 92 60.9
Haze_14184 Corylus avellana HOM05D003588 ORTHO05D004252 4.9e-19 97.8 88 60.2
CSS0016689 Camellia sinensis var. sinensis HOM05D003588 ORTHO05D004252 6.4e-19 97.4 88 61.4
CSS0025104 Camellia sinensis var. sinensis HOM05D003588 ORTHO05D004252 6.4e-19 97.4 88 61.4
MBI16_g38075_MAGBIO Magnolia biondii HOM05D003588 ORTHO05D004252 8.4e-19 97.1 97 55.7
MD17G1249900 Malus domestica HOM05D003588 ORTHO05D004252 8.4e-19 97.1 98 58.2
MSTRG.2778 Avicennia marina HOM05D003588 ORTHO05D004252 1.1e-18 96.7 88 58.0
Cc07_g08540 Coffea canephora HOM05D003588 ORTHO05D004252 1.1e-18 96.7 95 57.9
Oeu050384.1 Olea europaea HOM05D003588 ORTHO05D004252 1.1e-18 96.7 99 51.5
TAR622G0110 Trochodendron aralioides HOM05D003588 ORTHO05D004252 1.4e-18 96.3 92 60.9
Psat3g097680 Pisum sativum HOM05D003588 ORTHO05D004252 1.9e-18 95.9 94 57.4
RcHm_v2.0_Chr3g0494131 Rosa chinensis HOM05D003588 ORTHO05D004252 1.9e-18 95.9 98 58.2
Gohir.D07G181700 Gossypium hirsutum HOM05D003588 ORTHO05D004252 2.4e-18 95.5 96 62.5
Gorai.001G202700 Gossypium raimondii HOM05D003588 ORTHO05D004252 2.4e-18 95.5 96 62.5
MD17G1249700 Malus domestica HOM05D003588 ORTHO05D004252 2.4e-18 95.5 98 57.1
MD09G1255900 Malus domestica HOM05D003588 ORTHO05D004252 3.2e-18 95.1 98 57.1
Sed0005237 Sechium edule HOM05D003588 ORTHO05D004252 3.2e-18 95.1 94 57.4
CsaV3_2G033840 Cucumis sativus L. HOM05D003588 ORTHO05D004252 7.1e-18 94.0 96 57.3
ECA232G2944 Erigeron canadensis HOM05D003588 ORTHO05D004252 7.1e-18 94.0 101 51.5
FAN03G2066 Fragaria x ananassa HOM05D003588 ORTHO05D004252 1.2e-17 93.2 98 58.2
FAN10G2177 Fragaria x ananassa HOM05D003588 ORTHO05D004252 1.2e-17 93.2 98 58.2
unitig_899.g14514 Utricularia gibba HOM05D003588 ORTHO05D004252 1.6e-17 92.8 87 55.2
Aqoxy3G00200 Aquilegia oxysepala HOM05D003588 ORTHO05D004252 2.1e-17 92.4 97 56.7
HanXRQChr09g0262701 Helianthus annuus HOM05D003588 ORTHO05D004252 2.1e-17 92.4 94 50.0
Manes.01G112900 Manihot esculenta HOM05D003588 ORTHO05D004252 2.1e-17 92.4 95 58.9
CSS0045616 Camellia sinensis var. sinensis HOM05D003588 ORTHO05D004252 3.5e-17 91.7 101 55.4
FvH4_7g07990 Fragaria vesca HOM05D003588 ORTHO05D004252 6.0e-17 90.9 98 57.1
FAN01G1119 Fragaria x ananassa HOM05D003588 ORTHO05D004252 6.0e-17 90.9 98 57.1
FAN06G2375 Fragaria x ananassa HOM05D003588 ORTHO05D004252 6.0e-17 90.9 98 57.1
Lsat_1_v5_gn_4_155620 Lactuca sativa HOM05D003588 ORTHO05D004252 6.0e-17 90.9 97 52.6
ClCG11G007740 Citrullus lanatus HOM05D003588 ORTHO05D004252 1.0e-16 90.1 95 54.7
Manes.02G071350 Manihot esculenta HOM05D003588 ORTHO05D004252 1.0e-16 90.1 94 56.4
Prupe.3G148000 Prunus persica HOM05D003588 ORTHO05D004252 1.0e-16 90.1 95 60.0
Ciclev10010937m.g Citrus clementina HOM05D003588 ORTHO05D004252 1.3e-16 89.7 98 57.1
Gohir.A11G165800 Gossypium hirsutum HOM05D003588 ORTHO05D004252 1.3e-16 89.7 99 56.6
Gohir.D11G172000 Gossypium hirsutum HOM05D003588 ORTHO05D004252 1.3e-16 89.7 99 56.6
Gorai.007G184400 Gossypium raimondii HOM05D003588 ORTHO05D004252 1.3e-16 89.7 99 56.6
ATR0681G242 Amborella trichopoda HOM05D003588 ORTHO05D004252 2.3e-16 89.0 105 48.6
PSO478G1111 Papaver somniferum HOM05D003588 ORTHO05D004252 3.0e-16 88.6 96 55.2
PSO017G4387 Papaver somniferum HOM05D003588 ORTHO05D004252 3.9e-16 88.2 96 55.2
SGA_v2.0_scaffold49G18119 Striga asiatica HOM05D003588 ORTHO05D004252 6.7e-16 87.4 97 49.5
Lalb_Chr10g0091441 Lupinus albus HOM05D003588 ORTHO05D004252 8.7e-16 87.0 93 52.7
arahy.Tifrunner.gnm1.ann1.JMF5N7 Arachis hypogaea HOM05D003588 ORTHO05D004252 3.3e-15 85.1 99 50.5
arahy.Tifrunner.gnm1.ann1.QJYU1D Arachis hypogaea HOM05D003588 ORTHO05D004252 3.3e-15 85.1 99 50.5
DCAR_025903 Daucus carota HOM05D003588 ORTHO05D004252 1.6e-14 82.8 92 53.3
CDE09G0638 Ceratophyllum demersum HOM05D003588 ORTHO05D004252 4.8e-14 81.3 87 51.7
VMungo0464G0444 Vigna mungo HOM05D003588 ORTHO05D004252 6.2e-14 80.9 97 44.3
Os01g0514300 Oryza sativa ssp. japonica HOM05D003588 ORTHO05D004252 2.4e-13 79.0 92 50.0
Glyma.05G002100 Glycine max HOM05D003588 ORTHO05D004252 4.0e-13 78.2 95 49.5
arahy.Tifrunner.gnm1.ann1.SZ4JBM Arachis hypogaea HOM05D003588 ORTHO05D009236 1.2e-12 76.6 99 48.5
Ca_04138_v3 Cicer arietinum L. HOM05D003588 ORTHO05D004252 1.2e-12 76.6 98 46.9
CDE02G3249 Ceratophyllum demersum HOM05D003588 ORTHO05D004252 2.0e-12 75.9 87 49.4
SEGI_01406 Sequoiadendron giganteum HOM05D003588 ORTHO05D004252 2.6e-12 75.5 103 44.7
Zm00001eb341840 Zea mays HOM05D003588 ORTHO05D004252 2.6e-12 75.5 89 52.8
Glyma.19G002000 Glycine max HOM05D003588 ORTHO05D004252 3.4e-12 75.1 99 47.5
TPR.G25232 Trifolium pratense HOM05D003588 ORTHO05D004252 1.1e-10 70.1 96 45.8
Actinidia15898 Actinidia chinensis HOM05D003588 ORTHO05D004252 1.4e-10 69.7 57 63.2
Medtr6g004240 Medicago truncatula HOM05D003588 ORTHO05D004252 2.5e-10 68.9 94 44.7
CAN.G625.55 Capsicum annuum HOM05D003588 ORTHO05D000105 1.6e-09 66.2 51 64.7
Phvul.004G002300 Phaseolus vulgaris HOM05D003588 ORTHO05D004252 6.0e-09 64.3 113 38.9
CDE02G1293 Ceratophyllum demersum HOM05D003588 ORTHO05D004252 3.3e-07 58.5 66 51.5
arahy.Tifrunner.gnm1.ann1.CE0ZIG Arachis hypogaea HOM05D003588 ORTHO05D004252 2.8e-06 55.5 95 42.1
arahy.Tifrunner.gnm1.ann1.K3Z2GB Arachis hypogaea HOM05D003588 ORTHO05D004252 2.8e-06 55.5 95 42.1


User provided reference genes

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