Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
BcaC03g18430 Brassica carinata HOM05D003963 ORTHO05D004558 9.3e-193 677.6 619 100.0
BraA06t26067Z Brassica rapa HOM05D003963 ORTHO05D004558 1.5e-158 563.9 621 92.4
BolC3t18432H Brassica oleracea HOM05D003963 ORTHO05D004558 5.7e-158 562.0 621 92.4
Sp2g27620 Schrenkiella parvula HOM05D003963 ORTHO05D004558 7.5e-158 561.6 635 90.4
C03p61710 Brassica napus HOM05D003963 ORTHO05D004558 1.4e-156 557.4 622 92.3
A06p31280 Brassica napus HOM05D003963 ORTHO05D004558 1.5e-153 547.4 622 91.8
AL8G41940 Arabidopsis lyrata HOM05D003963 ORTHO05D004558 1.7e-149 533.9 638 88.6
Carub.0008s2535 Capsella rubella HOM05D003963 ORTHO05D004558 2.4e-148 530.0 640 88.9
AT5G64550 Arabidopsis thaliana HOM05D003963 ORTHO05D004558 1.3e-146 524.2 639 87.9
Thhalv10003819m.g Eutrema salsugineum HOM05D003963 ORTHO05D004558 1.3e-138 497.7 648 86.6
CARHR278520 Cardamine hirsuta HOM05D003963 ORTHO05D004558 2.1e-128 463.8 639 83.9
BcaB07g29747 Brassica carinata HOM05D003963 ORTHO05D004558 6.8e-119 432.2 618 84.6
A02p43350 Brassica napus HOM05D003963 ORTHO05D004558 1.1e-116 424.9 620 83.4
BraA02t09261Z Brassica rapa HOM05D003963 ORTHO05D004558 9.2e-116 421.8 617 83.6
C02p63440 Brassica napus HOM05D003963 ORTHO05D004558 2.6e-110 403.7 620 81.0
BolC2t12411H Brassica oleracea HOM05D003963 ORTHO05D004558 2.6e-110 403.7 620 81.0
A09p08700 Brassica napus HOM05D003963 ORTHO05D004558 3.6e-96 356.7 615 77.2
BraA09t36518Z Brassica rapa HOM05D003963 ORTHO05D004558 1.1e-95 355.1 615 77.2
Aa31LG1G17380 Aethionema arabicum HOM05D003963 ORTHO05D004558 3.8e-93 346.7 639 76.8
Aa31LG3G17400 Aethionema arabicum HOM05D003963 ORTHO05D004558 2.3e-82 310.8 645 70.4
Aa31sc1834G20 Aethionema arabicum HOM05D003963 ORTHO05D004558 8.2e-80 302.4 637 70.8
THA.LOC104799580 Tarenaya hassleriana HOM05D003963 ORTHO05D004558 1.5e-73 281.6 644 70.8
Sp6g33710 Schrenkiella parvula HOM05D003963 ORTHO05D004558 3.3e-65 253.8 628 69.6
Thhalv10013049m.g Eutrema salsugineum HOM05D003963 ORTHO05D004558 8.2e-64 249.2 628 68.9
AL6G20100 Arabidopsis lyrata HOM05D003963 ORTHO05D004558 5.0e-61 240.0 628 68.3
Potri.003G023300 Populus trichocarpa HOM05D003963 ORTHO05D004558 5.7e-57 226.5 656 62.7
TWI59G0617 Tripterygium wilfordii HOM05D003963 ORTHO05D004558 2.8e-56 224.2 661 65.1
CARHR203720 Cardamine hirsuta HOM05D003963 ORTHO05D004558 3.1e-55 220.7 619 68.8
Sabra03G0014600 Salix brachista HOM05D003963 ORTHO05D004558 1.5e-54 218.4 656 62.5
Cpa.g.sc0.13 Carica papaya HOM05D003963 ORTHO05D004558 4.5e-54 216.9 654 63.8
Potri.001G206600 Populus trichocarpa HOM05D003963 ORTHO05D004558 4.5e-54 216.9 655 62.0
Manes.04G062400 Manihot esculenta HOM05D003963 ORTHO05D004558 6.5e-53 213.0 661 62.0
FvH4_5g30651 Fragaria vesca HOM05D003963 ORTHO05D004558 8.5e-53 212.6 646 62.4
AUR62031300 Chenopodium quinoa HOM05D003963 ORTHO05D004558 1.4e-52 211.8 652 62.9
Ciclev10000572m.g Citrus clementina HOM05D003963 ORTHO05D004558 1.9e-52 211.5 644 62.7
Thecc.02G143400 Theobroma cacao HOM05D003963 ORTHO05D004558 1.9e-52 211.5 660 62.3
TWI23G1041 Tripterygium wilfordii HOM05D003963 ORTHO05D004558 1.9e-52 211.5 663 62.7
AUR62027385 Chenopodium quinoa HOM05D003963 ORTHO05D004558 9.4e-52 209.1 651 63.1
AT5G09670 Arabidopsis thaliana HOM05D003963 ORTHO05D004558 1.2e-51 208.8 597 69.5
FAN04G2665 Fragaria x ananassa HOM05D003963 ORTHO05D004558 1.6e-51 208.4 645 62.5
FAN13G1550 Fragaria x ananassa HOM05D003963 ORTHO05D004558 2.1e-51 208.0 645 64.7
COL.COLO4_20869 Corchorus olitorius HOM05D003963 ORTHO05D004558 2.3e-50 204.5 659 62.2
Duzib052G0219 Durio zibethinus HOM05D003963 ORTHO05D004558 3.9e-50 203.8 659 61.9
RcHm_v2.0_Chr7g0225521 Rosa chinensis HOM05D003963 ORTHO05D004558 6.7e-50 203.0 651 62.2
Sabra03G0014700 Salix brachista HOM05D003963 ORTHO05D004558 9.7e-49 199.1 650 63.4
Gorai.013G063300 Gossypium raimondii HOM05D003963 ORTHO05D004558 3.7e-48 197.2 658 63.2
QL11p019412 Quercus lobata HOM05D003963 ORTHO05D004558 5.3e-47 193.4 657 61.0
Haze_09992 Corylus avellana HOM05D003963 ORTHO05D004558 9.1e-47 192.6 654 60.9
ClCG06G009720 Citrullus lanatus HOM05D003963 ORTHO05D004558 1.6e-46 191.8 646 60.4
BolC9t53891H Brassica oleracea HOM05D003963 ORTHO05D004558 3.5e-46 190.7 227 52.4
BcaC04g23312 Brassica carinata HOM05D003963 ORTHO05D004558 4.5e-46 190.3 590 68.1
Duzib248G1667 Durio zibethinus HOM05D003963 ORTHO05D004558 7.7e-46 189.5 654 61.8
MD08G1221900 Malus domestica HOM05D003963 ORTHO05D004558 7.7e-46 189.5 656 60.1
Gohir.D13G056000 Gossypium hirsutum HOM05D003963 ORTHO05D004558 1.3e-45 188.7 658 63.7
EL10Ac8g19340 Beta vulgaris HOM05D003963 ORTHO05D004558 2.9e-45 187.6 641 62.7
Ah.14g085400 Amaranthus hybridus HOM05D003963 ORTHO05D004558 1.5e-44 185.3 640 61.2
Cfa005579 Carpinus fangiana HOM05D003963 ORTHO05D004558 1.9e-44 184.9 652 60.6
Haze_10775 Corylus avellana HOM05D003963 ORTHO05D004558 3.2e-44 184.1 657 60.6
Prupe.1G559700 Prunus persica HOM05D003963 ORTHO05D004558 1.2e-43 182.2 653 60.3
MD15G1414300 Malus domestica HOM05D003963 ORTHO05D004558 1.6e-43 181.8 657 59.8
Sed0018276 Sechium edule HOM05D003963 ORTHO05D004558 2.1e-43 181.4 646 59.9
CANSAT11G0470 Cannabis sativa HOM05D003963 ORTHO05D004558 2.7e-43 181.0 654 61.0
CsaV3_2G011200 Cucumis sativus L. HOM05D003963 ORTHO05D004558 6.1e-43 179.9 645 60.6
MELO3C020350.2 Cucumis melo HOM05D003963 ORTHO05D004558 8.0e-43 179.5 645 60.3
CSS0000527 Camellia sinensis var. sinensis HOM05D003963 ORTHO05D004558 4.0e-42 177.2 660 61.8
CSS0022227 Camellia sinensis var. sinensis HOM05D003963 ORTHO05D004558 4.0e-42 177.2 660 61.8
Gohir.A13G065700 Gossypium hirsutum HOM05D003963 ORTHO05D004558 5.2e-42 176.8 658 63.2
C09p09830 Brassica napus HOM05D003963 ORTHO05D004558 6.7e-42 176.4 225 50.2
Ah.09g232110 Amaranthus hybridus HOM05D003963 ORTHO05D004558 1.5e-41 175.3 633 61.1
VMungo0251G0315 Vigna mungo HOM05D003963 ORTHO05D004558 2.0e-41 174.9 655 60.8
Glyma.08G074900 Glycine max HOM05D003963 ORTHO05D004558 3.3e-41 174.1 653 60.9
Hma1.2p1_0217F.1_g091740 Hydrangea macrophylla HOM05D003963 ORTHO05D004558 3.3e-41 174.1 642 61.7
Glyma.05G120100 Glycine max HOM05D003963 ORTHO05D004558 9.7e-41 172.6 655 60.8
DCAR_029216 Daucus carota HOM05D003963 ORTHO05D004558 6.3e-40 169.9 664 61.7
Eucgr.I02691 Eucalyptus grandis HOM05D003963 ORTHO05D004558 8.2e-40 169.5 657 60.7
ECA236G3037 Erigeron canadensis HOM05D003963 ORTHO05D004558 1.8e-39 168.3 641 64.1
Dinv19323 Davidia involucrata HOM05D003963 ORTHO05D004558 3.1e-39 167.5 643 60.0
Dinv24217 Davidia involucrata HOM05D003963 ORTHO05D004558 4.1e-39 167.2 641 60.5
Ca_18336_v3 Cicer arietinum L. HOM05D003963 ORTHO05D004558 9.1e-39 166.0 655 60.8
BcaB05g21539 Brassica carinata HOM05D003963 ORTHO05D004558 1.2e-38 165.6 624 61.1
CiPaw.05G038900 Carya illinoinensis HOM05D003963 ORTHO05D004558 2.7e-38 164.5 654 60.1
Gorai.005G217900 Gossypium raimondii HOM05D003963 ORTHO05D004558 2.7e-38 164.5 654 59.9
Gohir.D02G195000 Gossypium hirsutum HOM05D003963 ORTHO05D004558 4.5e-38 163.7 654 59.9
GSVIVG01038733001 Vitis vinifera HOM05D003963 ORTHO05D004558 1.3e-37 162.2 240 47.1
vmacro01810 Vaccinium macrocarpon HOM05D003963 ORTHO05D004558 2.2e-37 161.4 644 59.8
HanXRQChr11g0337121 Helianthus annuus HOM05D003963 ORTHO05D004558 8.5e-37 159.5 641 60.8
BcaB04g19973 Brassica carinata HOM05D003963 ORTHO05D004558 1.1e-36 159.1 547 29.6
Cc02_g21840 Coffea canephora HOM05D003963 ORTHO05D004558 1.1e-36 159.1 664 58.3
Medtr4g094290 Medicago truncatula HOM05D003963 ORTHO05D004558 1.1e-36 159.1 655 60.3
Sc14g0002710 Simmondsia chinensis HOM05D003963 ORTHO05D004558 1.1e-36 159.1 653 59.0
Hma1.2p1_0557F.1_g178060 Hydrangea macrophylla HOM05D003963 ORTHO05D004558 1.5e-36 158.7 633 62.4
Actinidia28070 Actinidia chinensis HOM05D003963 ORTHO05D004558 1.9e-36 158.3 656 59.0
Nn1g05173 Nelumbo nucifera HOM05D003963 ORTHO05D004558 1.9e-36 158.3 657 59.5
A02p00100 Brassica napus HOM05D003963 ORTHO05D004558 2.5e-36 157.9 600 61.7
Lj4g0008212 Lotus japonicus HOM05D003963 ORTHO05D004558 3.2e-36 157.5 636 60.4
BraA02t04995Z Brassica rapa HOM05D003963 ORTHO05D004558 5.5e-36 156.8 600 64.5
Lsat_1_v5_gn_7_80140 Lactuca sativa HOM05D003963 ORTHO05D004558 1.2e-35 155.6 630 60.3
Oeu037198.2 Olea europaea HOM05D003963 ORTHO05D004558 1.2e-35 155.6 652 58.9
CiPaw.06G151200 Carya illinoinensis HOM05D003963 ORTHO05D004558 4.7e-35 153.7 659 58.3
Atru.chr6.908 Acer truncatum HOM05D003963 ORTHO05D004558 6.1e-35 153.3 259 42.9
Phvul.002G206700 Phaseolus vulgaris HOM05D003963 ORTHO05D004558 8.0e-35 152.9 603 63.0
Lalb_Chr13g0291591 Lupinus albus HOM05D003963 ORTHO05D004558 1.4e-34 152.1 657 60.9
Rhsim11G0134700 Rhododendron simsii HOM05D003963 ORTHO05D004558 8.8e-34 149.4 646 59.1
CAN.G523.95 Capsicum annuum HOM05D003963 ORTHO05D004558 2.6e-33 147.9 631 62.3
Psat7g097440 Pisum sativum HOM05D003963 ORTHO05D004558 5.7e-33 146.7 656 59.3
Peaxi162Scf00001g00041 Petunia axillaris HOM05D003963 ORTHO05D004558 7.5e-33 146.4 658 58.5
Peaxi162Scf00001g00043 Petunia axillaris HOM05D003963 ORTHO05D004558 7.5e-33 146.4 658 58.5
Nitab4.5_0002865g0100 Nicotiana tabacum HOM05D003963 ORTHO05D004558 9.8e-33 146.0 639 59.8
TAR381G1468 Trochodendron aralioides HOM05D003963 ORTHO05D004558 2.8e-32 144.4 653 61.9
PGSC0003DMG400029740 Solanum tuberosum HOM05D003963 ORTHO05D004558 3.7e-32 144.1 637 61.4
Gohir.A03G171700 Gossypium hirsutum HOM05D003963 ORTHO05D004558 4.8e-32 143.7 592 63.0
SalBow5G2159 Salvia bowleyana HOM05D003963 ORTHO05D004558 2.4e-31 141.4 623 60.8
Solyc01g104910.3 Solanum lycopersicum HOM05D003963 ORTHO05D004558 2.4e-31 141.4 634 61.7
Peaxi162Scf00003g00367 Petunia axillaris HOM05D003963 ORTHO05D004558 3.1e-31 141.0 657 59.4
Actinidia00250 Actinidia chinensis HOM05D003963 ORTHO05D004558 7.0e-31 139.8 595 60.3
Aqoxy6G00464 Aquilegia oxysepala HOM05D003963 ORTHO05D004558 1.2e-30 139.0 655 61.2
Nitab4.5_0003748g0020 Nicotiana tabacum HOM05D003963 ORTHO05D004558 1.2e-30 139.0 642 58.4
Sopen01g047420 Solanum pennellii HOM05D003963 ORTHO05D004558 1.6e-30 138.7 598 64.2
Oeu000233.2 Olea europaea HOM05D003963 ORTHO05D004558 4.5e-30 137.1 629 60.9
PSO541G3622 Papaver somniferum HOM05D003963 ORTHO05D004558 1.0e-29 136.0 655 59.5
Migut.B00637 Erythranthe guttata HOM05D003963 ORTHO05D004558 2.3e-29 134.8 607 59.5
TPR.G10467 Trifolium pratense HOM05D003963 ORTHO05D004558 8.6e-29 132.9 257 42.8
MSTRG.16566 Avicennia marina HOM05D003963 ORTHO05D004558 1.5e-28 132.1 636 58.2
Nn5g28887 Nelumbo nucifera HOM05D003963 ORTHO05D004558 7.2e-28 129.8 265 41.1
Lalb_Chr12g0208491 Lupinus albus HOM05D003963 ORTHO05D004558 1.2e-27 129.0 657 58.3
BolC2t06362H Brassica oleracea HOM05D006324 ORTHO05D007463 2.1e-27 128.3 615 50.9
BcaC03g13269 Brassica carinata HOM05D003963 ORTHO05D004558 2.8e-27 127.9 623 50.9
Oeu037196.1 Olea europaea HOM05D003963 ORTHO05D004558 4.7e-27 127.1 262 40.1
Hund06704 Selenicereus undatus HOM05D003963 ORTHO05D004558 8.0e-27 126.3 611 60.1
MBI05_g46461_MAGBIO Magnolia biondii HOM05D003963 ORTHO05D004558 1.0e-26 125.9 636 60.7
Atru.chr10.2101 Acer truncatum HOM05D003963 ORTHO05D004558 1.4e-26 125.6 244 39.8
SalBow6G3757 Salvia bowleyana HOM05D003963 ORTHO05D004558 5.2e-26 123.6 620 60.2
SalBow6G4534 Salvia bowleyana HOM05D003963 ORTHO05D004558 5.2e-26 123.6 620 60.2
PSO675G1096 Papaver somniferum HOM05D003963 ORTHO05D004558 6.8e-26 123.2 269 37.9
Atru.chr10.2100 Acer truncatum HOM05D003963 ORTHO05D004558 9.8e-25 119.4 236 63.1
Actinidia38971 Actinidia chinensis HOM05D003963 ORTHO05D004558 6.3e-24 116.7 633 58.8
ECA234G1426 Erigeron canadensis HOM05D003963 ORTHO05D004558 5.0e-21 107.1 230 39.1
Lalb_Chr07g0189461 Lupinus albus HOM05D003963 ORTHO05D004558 1.5e-20 105.5 645 56.4
Rhsim11G0135400 Rhododendron simsii HOM05D003963 ORTHO05D004558 5.6e-20 103.6 237 39.7
Peaxi162Scf00152g01123 Petunia axillaris HOM05D003963 ORTHO05D004558 1.2e-19 102.4 264 37.5
Os04g0640900 Oryza sativa ssp. japonica HOM05D003963 ORTHO05D004558 2.3e-18 98.2 260 35.0
Os04g0458200 Oryza sativa ssp. japonica HOM05D003963 ORTHO05D004558 1.2e-17 95.9 236 34.3
unitig_62.g23623 Utricularia gibba HOM05D003963 ORTHO05D004558 1.5e-17 95.5 215 38.1
CDE05G1767 Ceratophyllum demersum HOM05D003963 ORTHO05D004558 2.6e-17 94.7 197 40.1
SGA_v2.0_scaffold45G17289 Striga asiatica HOM05D003963 ORTHO05D004558 2.6e-17 94.7 223 39.5
Zm00001eb080920 Zea mays HOM05D003963 ORTHO05D004558 2.6e-17 94.7 234 33.3
Zm00001eb423980 Zea mays HOM05D003963 ORTHO05D004558 2.2e-16 91.7 195 37.9
Lj5C243T4 Lonicera japonica HOM05D003963 ORTHO05D004558 3.7e-16 90.9 622 55.6
Zm00001eb068980 Zea mays HOM05D003963 ORTHO05D004558 1.4e-15 89.0 207 36.2
Os02g0575700 Oryza sativa ssp. japonica HOM05D003963 ORTHO05D004558 2.4e-15 88.2 262 32.8
Zm00001eb244890 Zea mays HOM05D003963 ORTHO05D004558 5.4e-15 87.0 189 38.1
Zm00001eb182980 Zea mays HOM05D003963 ORTHO05D004558 1.6e-14 85.5 257 34.6
CDE02G0069 Ceratophyllum demersum HOM05D003963 ORTHO05D004558 1.0e-13 82.8 227 35.2
Lj9P318T69 Lonicera japonica HOM05D003963 ORTHO05D004558 1.0e-13 82.8 436 70.2
Zm00001eb347870 Zea mays HOM05D003963 ORTHO05D010684 1.0e-13 82.8 209 34.4
ATR0564G216 Amborella trichopoda HOM05D003963 ORTHO05D004558 8.6e-13 79.7 227 39.6
HanXRQChr10g0293231 Helianthus annuus HOM05D003963 ORTHO05D004558 1.5e-12 79.0 229 33.6
Haze_09989 Corylus avellana HOM05D003963 ORTHO05D004558 9.5e-12 76.3 118 42.4
HPP92_027148 Vanilla planifolia HOM05D003963 ORTHO05D004558 4.7e-11 73.9 215 35.8
SEGI_28658 Sequoiadendron giganteum HOM05D003548 ORTHO05D004066 4.4e-09 67.4 179 34.6
Lsat_1_v5_gn_5_106681 Lactuca sativa HOM05D003963 ORTHO05D004558 2.2e-08 65.1 604 44.5
Pp3c7_8590 Physcomitrium patens HOM05D031910 ORTHO05D004558 4.9e-08 63.9 152 34.9
Pp3c11_24820 Physcomitrium patens HOM05D031910 ORTHO05D004558 6.4e-08 63.5 176 31.8
HPP92_016461 Vanilla planifolia HOM05D003963 ORTHO05D004558 2.4e-07 61.6 194 36.6
MBI06_g29318_MAGBIO Magnolia biondii HOM05D003548 ORTHO05D004066 1.6e-06 58.9 104 37.5
Nn1g01756 Nelumbo nucifera HOM05D003548 ORTHO05D004066 1.6e-06 58.9 34 73.5
HPP92_006483 Vanilla planifolia HOM05D003548 ORTHO05D004066 1.6e-06 58.9 41 65.9
CDE10G0521 Ceratophyllum demersum HOM05D003548 ORTHO05D004066 2.7e-06 58.2 70 45.7
PSO135G0411 Papaver somniferum HOM05D003548 ORTHO05D004066 4.6e-06 57.4 69 47.8
PSO384G2366 Papaver somniferum HOM05D003548 ORTHO05D004066 4.6e-06 57.4 69 47.8
SEGI_29670 Sequoiadendron giganteum HOM05D003963 ORTHO05D004558 6.0e-06 57.0 108 38.9


User provided reference genes

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