Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
BcaC03g18407 Brassica carinata HOM05D000626 ORTHO05D003868 9.2e-65 250.0 118 100.0
BraA07t29454Z Brassica rapa HOM05D000626 ORTHO05D003868 5.8e-43 177.6 185 56.2
Sp2g30020 Schrenkiella parvula HOM05D000626 ORTHO05D003868 9.8e-43 176.8 185 55.7
BcaB02g10001 Brassica carinata HOM05D000626 ORTHO05D003868 1.3e-42 176.4 185 55.7
BcaB04g20111 Brassica carinata HOM05D000626 ORTHO05D003868 1.7e-42 176.0 185 55.7
A09p09850 Brassica napus HOM05D000626 ORTHO05D003868 1.7e-42 176.0 185 55.7
C09p11660 Brassica napus HOM05D000626 ORTHO05D003868 1.7e-42 176.0 185 55.7
BolC9t54060H Brassica oleracea HOM05D000626 ORTHO05D003868 1.7e-42 176.0 185 55.7
BraA09t36632Z Brassica rapa HOM05D000626 ORTHO05D003868 1.7e-42 176.0 185 55.7
C07p25140 Brassica napus HOM05D000626 ORTHO05D003868 3.7e-42 174.9 185 55.1
Thhalv10004242m.g Eutrema salsugineum HOM05D000626 ORTHO05D003868 3.7e-42 174.9 185 55.1
BcaC06g34731 Brassica carinata HOM05D000626 ORTHO05D003868 4.9e-42 174.5 185 55.1
A07p17280 Brassica napus HOM05D000626 ORTHO05D003868 4.9e-42 174.5 165 58.8
Aa31LG1G15220 Aethionema arabicum HOM05D000626 ORTHO05D003868 1.1e-41 173.3 185 55.7
BcaC04g23148 Brassica carinata HOM05D000626 ORTHO05D003868 1.4e-41 172.9 185 54.6
AL8G44800 Arabidopsis lyrata HOM05D000626 ORTHO05D003868 1.9e-41 172.6 165 58.2
Carub.0008s2782 Capsella rubella HOM05D000626 ORTHO05D003868 1.9e-41 172.6 165 58.2
CARHR281040 Cardamine hirsuta HOM05D000626 ORTHO05D003868 1.9e-41 172.6 165 58.2
AT5G66680 Arabidopsis thaliana HOM05D000626 ORTHO05D003868 4.1e-41 171.4 165 57.6
THA.LOC104819216 Tarenaya hassleriana HOM05D000626 ORTHO05D003868 7.3e-38 160.6 185 51.4
THA.LOC104826869 Tarenaya hassleriana HOM05D000626 ORTHO05D003868 1.4e-36 156.4 165 52.7
MELO3C021946.2 Cucumis melo HOM05D000626 ORTHO05D003868 2.9e-34 148.7 130 56.9
PSO675G2926 Papaver somniferum HOM05D000626 ORTHO05D003868 3.8e-34 148.3 185 46.5
Manes.13G136200 Manihot esculenta HOM05D000626 ORTHO05D003868 6.4e-34 147.5 165 49.1
PSO541G5997 Papaver somniferum HOM05D000626 ORTHO05D003868 8.4e-34 147.1 185 46.5
Gohir.D13G047000 Gossypium hirsutum HOM05D000626 ORTHO05D003868 1.4e-33 146.4 165 47.9
Atru.chr3.513 Acer truncatum HOM05D000626 ORTHO05D003868 1.9e-33 146.0 165 50.3
HanXRQChr15g0487501 Helianthus annuus HOM05D000626 ORTHO05D003868 1.9e-33 146.0 165 49.7
Thecc.01G041600 Theobroma cacao HOM05D000626 ORTHO05D003868 2.4e-33 145.6 165 49.7
BolC7t43044H Brassica oleracea HOM05D000626 ORTHO05D003868 4.1e-33 144.8 184 47.8
CSS0014885 Camellia sinensis var. sinensis HOM05D000626 ORTHO05D003868 5.4e-33 144.4 165 49.1
ECA232G3839 Erigeron canadensis HOM05D000626 ORTHO05D003868 5.4e-33 144.4 164 48.8
arahy.Tifrunner.gnm1.ann1.GNS53T Arachis hypogaea HOM05D000626 ORTHO05D003868 1.6e-32 142.9 165 48.5
arahy.Tifrunner.gnm1.ann1.NL7PFA Arachis hypogaea HOM05D000626 ORTHO05D003868 1.6e-32 142.9 165 48.5
MSTRG.23557 Avicennia marina HOM05D000626 ORTHO05D003868 1.6e-32 142.9 185 47.6
C02p64860 Brassica napus HOM05D000626 ORTHO05D003868 1.6e-32 142.9 68 97.1
Gohir.A13G048600 Gossypium hirsutum HOM05D000626 ORTHO05D003868 2.1e-32 142.5 165 46.7
Manes.12G098300 Manihot esculenta HOM05D000626 ORTHO05D003868 2.7e-32 142.1 165 48.5
Thecc.02G122300 Theobroma cacao HOM05D000626 ORTHO05D003868 2.7e-32 142.1 165 47.9
TWI31G0747 Tripterygium wilfordii HOM05D000626 ORTHO05D003868 3.5e-32 141.7 169 46.7
Duzib052G0942 Durio zibethinus HOM05D000626 ORTHO05D003868 4.6e-32 141.4 143 55.9
Nn5g29507 Nelumbo nucifera HOM05D000626 ORTHO05D003868 4.6e-32 141.4 165 48.5
Potri.007G031000 Populus trichocarpa HOM05D000626 ORTHO05D003868 4.6e-32 141.4 165 48.5
VMungo1127G0953 Vigna mungo HOM05D000626 ORTHO05D003868 4.6e-32 141.4 185 47.0
FvH4_2g08200 Fragaria vesca HOM05D000626 ORTHO05D003868 6.0e-32 141.0 166 48.2
FAN24G1839 Fragaria x ananassa HOM05D000626 ORTHO05D003868 6.0e-32 141.0 166 48.2
CDE01G0575 Ceratophyllum demersum HOM05D000626 ORTHO05D003868 7.8e-32 140.6 165 46.7
Dinv39947 Davidia involucrata HOM05D000626 ORTHO05D003868 7.8e-32 140.6 164 48.8
Prupe.7G148700 Prunus persica HOM05D000626 ORTHO05D003868 7.8e-32 140.6 165 46.1
Prupe.8G102600 Prunus persica HOM05D000626 ORTHO05D003868 7.8e-32 140.6 166 47.0
COL.COLO4_22139 Corchorus olitorius HOM05D000626 ORTHO05D003868 1.0e-31 140.2 165 48.5
FAN15G2364 Fragaria x ananassa HOM05D000626 ORTHO05D003868 1.0e-31 140.2 166 47.0
Gohir.D04G159100 Gossypium hirsutum HOM05D000626 ORTHO05D003868 1.0e-31 140.2 165 46.7
Gorai.012G146500 Gossypium raimondii HOM05D000626 ORTHO05D003868 1.0e-31 140.2 165 46.7
MD05G1070400 Malus domestica HOM05D000626 ORTHO05D003868 1.0e-31 140.2 166 47.6
RcHm_v2.0_Chr6g0262991 Rosa chinensis HOM05D000626 ORTHO05D003868 1.0e-31 140.2 166 47.0
TAR376G0372 Trochodendron aralioides HOM05D000626 ORTHO05D003868 1.0e-31 140.2 185 44.3
COL.COLO4_32455 Corchorus olitorius HOM05D000626 ORTHO05D003868 1.3e-31 139.8 185 44.9
FAN20G2380 Fragaria x ananassa HOM05D000626 ORTHO05D003868 1.3e-31 139.8 166 47.6
Lj3g0026150 Lotus japonicus HOM05D000626 ORTHO05D003868 1.3e-31 139.8 185 45.4
Lalb_Chr03g0025801 Lupinus albus HOM05D000626 ORTHO05D003868 1.3e-31 139.8 185 44.9
Phvul.011G047300 Phaseolus vulgaris HOM05D000626 ORTHO05D003868 1.3e-31 139.8 185 45.9
TWI09G1554 Tripterygium wilfordii HOM05D000626 ORTHO05D003868 1.7e-31 139.4 165 47.9
Actinidia36541 Actinidia chinensis HOM05D000626 ORTHO05D003868 2.3e-31 139.0 164 46.3
Duzib264G0072 Durio zibethinus HOM05D000626 ORTHO05D003868 2.3e-31 139.0 165 48.5
FAN27G0454 Fragaria x ananassa HOM05D000626 ORTHO05D003868 2.3e-31 139.0 166 47.6
PGR042G1683 Punica granatum HOM05D000626 ORTHO05D003868 2.3e-31 139.0 165 46.7
GSVIVG01019024001 Vitis vinifera HOM05D000626 ORTHO05D003868 2.3e-31 139.0 185 42.7
GSVIVG01031917001 Vitis vinifera HOM05D000626 ORTHO05D003868 2.3e-31 139.0 185 44.3
Actinidia25417 Actinidia chinensis HOM05D000626 ORTHO05D003868 3.0e-31 138.7 165 46.1
CDE02G0645 Ceratophyllum demersum HOM05D000626 ORTHO05D003868 3.0e-31 138.7 139 54.7
Potri.005G127000 Populus trichocarpa HOM05D000626 ORTHO05D003868 3.0e-31 138.7 165 47.9
Sabra07G0026800 Salix brachista HOM05D000626 ORTHO05D003868 3.9e-31 138.3 165 47.3
Ciclev10028484m.g Citrus clementina HOM05D000626 ORTHO05D003868 5.1e-31 137.9 165 46.1
Gohir.A04G117400 Gossypium hirsutum HOM05D000626 ORTHO05D003868 6.6e-31 137.5 165 45.5
Solyc01g109410.4 Solanum lycopersicum HOM05D000626 ORTHO05D003868 6.6e-31 137.5 165 46.7
Sopen01g051600 Solanum pennellii HOM05D000626 ORTHO05D003868 6.6e-31 137.5 165 46.7
SGA_v2.0_scaffold276G46656 Striga asiatica HOM05D000626 ORTHO05D003868 6.6e-31 137.5 165 46.7
Oeu032561.1 Olea europaea HOM05D000626 ORTHO05D003868 8.6e-31 137.1 185 44.9
Duzib132G0298 Durio zibethinus HOM05D000626 ORTHO05D003868 1.1e-30 136.7 165 46.1
Lalb_Chr01g0002691 Lupinus albus HOM05D000626 ORTHO05D003868 1.1e-30 136.7 165 45.5
Hund06221 Selenicereus undatus HOM05D000626 ORTHO05D003868 1.1e-30 136.7 165 46.1
TWI53G0930 Tripterygium wilfordii HOM05D000626 ORTHO05D003868 1.1e-30 136.7 165 47.3
Eucgr.G01893 Eucalyptus grandis HOM05D000626 ORTHO05D003868 1.5e-30 136.3 185 43.2
MD15G1269000 Malus domestica HOM05D000626 ORTHO05D003868 1.5e-30 136.3 185 41.6
CAN.G322.113 Capsicum annuum HOM05D000626 ORTHO05D003868 1.9e-30 136.0 165 45.5
Cpa.g.sc158.17 Carica papaya HOM05D000626 ORTHO05D003868 1.9e-30 136.0 185 45.4
SGA_v2.0_scaffold33G13424 Striga asiatica HOM05D000626 ORTHO05D003868 1.9e-30 136.0 165 46.7
Actinidia00502 Actinidia chinensis HOM05D000626 ORTHO05D003868 2.5e-30 135.6 142 50.7
Aqoxy6G01025 Aquilegia oxysepala HOM05D000626 ORTHO05D003868 2.5e-30 135.6 165 45.5
CsaV3_2G014400 Cucumis sativus L. HOM05D000626 ORTHO05D003868 2.5e-30 135.6 165 46.1
Dinv26800 Davidia involucrata HOM05D000626 ORTHO05D003868 2.5e-30 135.6 163 46.6
Psat7g141000 Pisum sativum HOM05D000626 ORTHO05D003868 2.5e-30 135.6 165 46.7
Sed0005165 Sechium edule HOM05D000626 ORTHO05D003868 2.5e-30 135.6 165 46.1
CANSAT01G0918 Cannabis sativa HOM05D000626 ORTHO05D003868 3.3e-30 135.2 163 45.4
CiPaw.05G061300 Carya illinoinensis HOM05D000626 ORTHO05D003868 3.3e-30 135.2 165 46.1
AUR62008017 Chenopodium quinoa HOM05D000626 ORTHO05D003868 3.3e-30 135.2 165 44.2
Cc07_g09070 Coffea canephora HOM05D000626 ORTHO05D003868 3.3e-30 135.2 165 46.7
Hund14135 Selenicereus undatus HOM05D000626 ORTHO05D003868 3.3e-30 135.2 165 45.5
ClCG09G017810 Citrullus lanatus HOM05D000626 ORTHO05D003868 4.3e-30 134.8 165 45.5
MD10G1081300 Malus domestica HOM05D000626 ORTHO05D003868 4.3e-30 134.8 166 45.8
Nitab4.5_0008989g0040 Nicotiana tabacum HOM05D000626 ORTHO05D003868 4.3e-30 134.8 165 46.7
Oeu035116.1 Olea europaea HOM05D000626 ORTHO05D003868 4.3e-30 134.8 185 43.8
Zm00001eb303200 Zea mays HOM05D000626 ORTHO05D003868 4.3e-30 134.8 165 46.1
ATR0733G160 Amborella trichopoda HOM05D000626 ORTHO05D003868 5.6e-30 134.4 185 43.2
DCAR_017221 Daucus carota HOM05D000626 ORTHO05D003868 5.6e-30 134.4 165 45.5
EL10Ac6g14893 Beta vulgaris HOM05D000626 ORTHO05D003868 7.3e-30 134.0 165 44.2
Haze_02415 Corylus avellana HOM05D000626 ORTHO05D003868 7.3e-30 134.0 165 46.1
Dinv23553 Davidia involucrata HOM05D000626 ORTHO05D003868 7.3e-30 134.0 165 46.1
unitig_37.g12815 Utricularia gibba HOM05D000626 ORTHO05D003868 7.3e-30 134.0 165 44.8
HPP92_010187 Vanilla planifolia HOM05D000626 ORTHO05D003868 7.3e-30 134.0 165 46.1
BcaB07g29659 Brassica carinata HOM05D000626 ORTHO05D003868 9.6e-30 133.7 211 44.1
Medtr4g069240 Medicago truncatula HOM05D000626 ORTHO05D003868 9.6e-30 133.7 165 45.5
Ca_20850_v3 Cicer arietinum L. HOM05D000626 ORTHO05D003868 1.2e-29 133.3 165 46.7
QL11p042537 Quercus lobata HOM05D000626 ORTHO05D003868 1.2e-29 133.3 164 44.5
Glyma.12G045400 Glycine max HOM05D000626 ORTHO05D003868 1.6e-29 132.9 185 42.7
Peaxi162Scf00016g00944 Petunia axillaris HOM05D000626 ORTHO05D003868 1.6e-29 132.9 165 45.5
TPR.G28529 Trifolium pratense HOM05D000626 ORTHO05D003868 1.6e-29 132.9 165 46.1
Atru.chr5.2949 Acer truncatum HOM05D000626 ORTHO05D003868 2.1e-29 132.5 165 44.8
Glyma.11G120300 Glycine max HOM05D000626 ORTHO05D003868 2.1e-29 132.5 165 44.8
Sed0006655 Sechium edule HOM05D000626 ORTHO05D003868 2.1e-29 132.5 165 44.8
Zm00001eb095330 Zea mays HOM05D000626 ORTHO05D003868 2.1e-29 132.5 165 45.5
Sc18g0004660 Simmondsia chinensis HOM05D000626 ORTHO05D003868 3.6e-29 131.7 185 41.1
Cpa.g.sc62.112 Carica papaya HOM05D000626 ORTHO05D003868 6.2e-29 131.0 166 44.6
AUR62003200 Chenopodium quinoa HOM05D000626 ORTHO05D003868 8.1e-29 130.6 165 43.0
Cc02_g17860 Coffea canephora HOM05D000626 ORTHO05D003868 1.1e-28 130.2 165 44.2
AUR62011357 Chenopodium quinoa HOM05D000626 ORTHO05D003868 1.4e-28 129.8 165 44.2
MSTRG.16792 Avicennia marina HOM05D000626 ORTHO05D003868 1.8e-28 129.4 165 44.2
Aqoxy5G01696 Aquilegia oxysepala HOM05D000626 ORTHO05D003868 4.0e-28 128.3 165 43.0
Manes.15G148600 Manihot esculenta HOM05D000626 ORTHO05D003868 4.0e-28 128.3 165 43.6
Nitab4.5_0000199g0010 Nicotiana tabacum HOM05D000626 ORTHO05D003868 4.0e-28 128.3 165 44.2
Hma1.2p1_0066F.1_g036710 Hydrangea macrophylla HOM05D000626 ORTHO05D003868 6.9e-28 127.5 165 43.6
Ah.03g139660 Amaranthus hybridus HOM05D000626 ORTHO05D003868 1.5e-27 126.3 165 40.6
SMO358G0537 Selaginella moellendorffii HOM05D000626 ORTHO05D003868 3.4e-27 125.2 165 44.2
Mapoly0103s0006 Marchantia polymorpha HOM05D000626 ORTHO05D003868 2.9e-26 122.1 165 43.0
SalBow5G3169 Salvia bowleyana HOM05D000626 ORTHO05D003868 2.9e-26 122.1 181 41.4
EL10Ac9g21756 Beta vulgaris HOM05D000626 ORTHO05D003868 1.4e-25 119.8 165 41.2
AagrBONN_evm.TU.Sc2ySwM_117.2383 Anthoceros agrestis HOM05D000626 ORTHO05D003868 7.1e-25 117.5 165 41.2
CBR_g28880 Chara braunii HOM05D000626 ORTHO05D003868 9.3e-25 117.1 165 38.8
SGA_v2.0_scaffold58G20567 Striga asiatica HOM05D000626 ORTHO05D003868 2.7e-24 115.5 129 47.3
vmacro02136 Vaccinium macrocarpon HOM05D000626 ORTHO05D003868 4.6e-24 114.8 198 36.9
CSS0006874 Camellia sinensis var. sinensis HOM05D000626 ORTHO05D003868 7.8e-24 114.0 149 43.0
Pp3c24_6930 Physcomitrium patens HOM05D000626 ORTHO05D003868 1.0e-23 113.6 165 38.2
Nitab4.5_0001794g0020 Nicotiana tabacum HOM05D000626 ORTHO05D003868 1.7e-23 112.8 148 43.2
Lsat_1_v5_gn_4_144441 Lactuca sativa HOM05D000626 ORTHO05D003868 6.6e-23 110.9 174 40.8
Ah.01g019620 Amaranthus hybridus HOM05D000626 ORTHO05D003868 8.7e-23 110.5 157 40.8
Lj5C200G5 Lonicera japonica HOM05D000626 ORTHO05D003868 1.6e-21 106.3 148 40.5
SalBow6G3366 Salvia bowleyana HOM05D000626 ORTHO05D003868 2.8e-21 105.5 148 40.5
Peaxi162Scf00684g00567 Petunia axillaris HOM05D000626 ORTHO05D003868 1.8e-20 102.8 116 50.0
Nitab4.5_0022318g0010 Nicotiana tabacum HOM05D000626 ORTHO05D003868 5.3e-20 101.3 116 49.1
Lj2C447T14 Lonicera japonica HOM05D000626 ORTHO05D003868 1.1e-17 93.6 137 43.8
Lj4C195G12 Lonicera japonica HOM05D000626 ORTHO05D003868 1.9e-17 92.8 137 43.1
Migut.H00194 Erythranthe guttata HOM05D000626 ORTHO05D003868 4.2e-17 91.7 73 65.8
AUR62016705 Chenopodium quinoa HOM05D000626 ORTHO05D003868 7.1e-17 90.9 137 43.1
Cre14.g614100 Chlamydomonas reinhardtii HOM05D000626 ORTHO05D003868 4.6e-16 88.2 166 32.5
Gorai.013G052700 Gossypium raimondii HOM05D000626 ORTHO05D003868 6.0e-16 87.8 53 69.8
Thecc.08G195700 Theobroma cacao HOM05D000626 ORTHO05D003868 1.8e-12 76.3 44 79.5
Duzib147G0490 Durio zibethinus HOM05D000626 ORTHO05D003868 2.4e-12 75.9 45 73.3
BraA02t09362Z Brassica rapa HOM05D000626 ORTHO05D003868 1.8e-07 59.7 33 75.8
arahy.Tifrunner.gnm1.ann1.61JD7D Arachis hypogaea HOM05D000626 ORTHO05D003868 6.7e-07 57.8 34 73.5
arahy.Tifrunner.gnm1.ann1.FT0TL2 Arachis hypogaea HOM05D000626 ORTHO05D003868 6.7e-07 57.8 33 75.8
arahy.Tifrunner.gnm1.ann1.ZIS5WG Arachis hypogaea HOM05D000626 ORTHO05D003868 1.5e-06 56.6 33 72.7
arahy.Tifrunner.gnm1.ann1.4Z2V5Y Arachis hypogaea HOM05D000626 ORTHO05D003868 1.9e-06 56.2 33 72.7
arahy.Tifrunner.gnm1.ann1.9EQ5HC Arachis hypogaea HOM05D000626 ORTHO05D003868 1.9e-06 56.2 33 72.7


User provided reference genes

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