Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
BcaC03g18400 Brassica carinata HOM05D006100 ORTHO05D007539 1.0e-61 240.0 124 100.0
BcaB07g29655 Brassica carinata HOM05D006100 ORTHO05D007539 1.5e-28 129.8 125 64.0
C02p64790 Brassica napus HOM05D006100 ORTHO05D007539 3.2e-28 128.6 64 100.0
BolC2t12540H Brassica oleracea HOM05D006100 ORTHO05D007539 3.2e-28 128.6 64 100.0
A02p44400 Brassica napus HOM05D006100 ORTHO05D007539 6.1e-27 124.4 128 60.9
BraA02t09357Z Brassica rapa HOM05D006100 ORTHO05D007539 6.1e-27 124.4 128 60.9
BcaC06g34744 Brassica carinata HOM05D006100 ORTHO05D007539 2.0e-25 119.4 134 58.2
C07p25000 Brassica napus HOM05D006100 ORTHO05D007539 2.0e-25 119.4 134 58.2
BolC7t43033H Brassica oleracea HOM05D006100 ORTHO05D007539 2.0e-25 119.4 134 58.2
Carub.0008s2773 Capsella rubella HOM05D006100 ORTHO05D007539 3.3e-25 118.6 69 85.5
AL8G44670 Arabidopsis lyrata HOM05D006100 ORTHO05D007539 3.7e-24 115.2 69 82.6
A07p17150 Brassica napus HOM05D006100 ORTHO05D007539 3.7e-24 115.2 134 58.2
BraA07t29442Z Brassica rapa HOM05D006100 ORTHO05D007539 3.7e-24 115.2 134 58.2
BcaB02g09991 Brassica carinata HOM05D006100 ORTHO05D007539 6.3e-24 114.4 128 55.5
AT5G66780 Arabidopsis thaliana HOM05D006100 ORTHO05D007539 1.1e-23 113.6 69 81.2
CARHR280920 Cardamine hirsuta HOM05D006100 ORTHO05D007539 3.1e-23 112.1 69 79.7
Thhalv10005154m.g Eutrema salsugineum HOM05D006100 ORTHO05D007539 4.5e-22 108.2 127 54.3
Thecc.01G036600 Theobroma cacao HOM05D006100 ORTHO05D007539 2.9e-21 105.5 70 78.6
Aa31LG1G15340 Aethionema arabicum HOM05D006100 ORTHO05D007539 5.0e-21 104.8 67 79.1
THA.LOC104821276 Tarenaya hassleriana HOM05D006100 ORTHO05D007539 1.1e-20 103.6 68 76.5
Medtr5g020060 Medicago truncatula HOM05D006100 ORTHO05D007539 1.5e-20 103.2 63 82.5
Duzib147G1001 Durio zibethinus HOM05D006100 ORTHO05D007539 1.9e-20 102.8 70 75.7
QL06p045927 Quercus lobata HOM05D006100 ORTHO05D007539 4.2e-20 101.7 72 70.8
Sp2g29900 Schrenkiella parvula HOM05D006100 ORTHO05D007539 5.5e-20 101.3 127 50.4
Haze_15098 Corylus avellana HOM05D006100 ORTHO05D007539 7.2e-20 100.9 70 74.3
Ciclev10026748m.g Citrus clementina HOM05D006100 ORTHO05D007539 9.4e-20 100.5 71 74.6
Lsat_1_v5_gn_4_148381 Lactuca sativa HOM05D006100 ORTHO05D007539 1.2e-19 100.1 64 79.7
Aqoxy6G01099 Aquilegia oxysepala HOM05D006100 ORTHO05D007539 8.0e-19 97.4 69 71.0
COL.COLO4_22086 Corchorus olitorius HOM05D006100 ORTHO05D007539 1.0e-18 97.1 69 71.0
TWI09G0021 Tripterygium wilfordii HOM05D006100 ORTHO05D007539 1.4e-18 96.7 69 73.9
Duzib264G0645 Durio zibethinus HOM05D006100 ORTHO05D007539 1.8e-18 96.3 70 70.0
Psat2g159960 Pisum sativum HOM05D006100 ORTHO05D007539 1.8e-18 96.3 63 76.2
CiPaw.02G017200 Carya illinoinensis HOM05D006100 ORTHO05D007539 2.3e-18 95.9 72 68.1
Dinv39980 Davidia involucrata HOM05D006100 ORTHO05D007539 2.3e-18 95.9 70 71.4
ECA232G0790 Erigeron canadensis HOM05D006100 ORTHO05D007539 2.3e-18 95.9 68 73.5
Lalb_Chr09g0322441 Lupinus albus HOM05D006100 ORTHO05D007539 3.0e-18 95.5 68 72.1
MD02G1148600 Malus domestica HOM05D006100 ORTHO05D007539 4.0e-18 95.1 70 70.0
HanXRQChr11g0324821 Helianthus annuus HOM05D006100 ORTHO05D007539 5.2e-18 94.7 67 73.1
Prupe.7G153900 Prunus persica HOM05D006100 ORTHO05D007539 6.8e-18 94.4 69 68.1
Phvul.002G029900 Phaseolus vulgaris HOM05D006100 ORTHO05D007539 8.8e-18 94.0 73 68.5
arahy.Tifrunner.gnm1.ann1.L1JEHI Arachis hypogaea HOM05D006100 ORTHO05D007539 2.0e-17 92.8 63 74.6
Lj2g0016254 Lotus japonicus HOM05D006100 ORTHO05D007539 2.6e-17 92.4 63 74.6
CiPaw.01G037400 Carya illinoinensis HOM05D006100 ORTHO05D007539 3.4e-17 92.0 70 67.1
VMungo1215G0978 Vigna mungo HOM05D006100 ORTHO05D007539 4.4e-17 91.7 71 69.0
Gohir.A10G094900 Gossypium hirsutum HOM05D006100 ORTHO05D007539 7.5e-17 90.9 71 66.2
PGR102G3048 Punica granatum HOM05D006100 ORTHO05D007539 9.8e-17 90.5 69 65.2
PSO675G2321 Papaver somniferum HOM05D006100 ORTHO05D007539 1.7e-16 89.7 70 71.4
Actinidia19182 Actinidia chinensis HOM05D006100 ORTHO05D007539 2.2e-16 89.4 66 69.7
Gohir.A11G184500 Gossypium hirsutum HOM05D006100 ORTHO05D007539 2.2e-16 89.4 70 67.1
arahy.Tifrunner.gnm1.ann1.IKK69W Arachis hypogaea HOM05D006100 ORTHO05D007539 2.8e-16 89.0 63 73.0
MD15G1262900 Malus domestica HOM05D006100 ORTHO05D007539 2.8e-16 89.0 73 64.4
Atru.chr3.567 Acer truncatum HOM05D006100 ORTHO05D007539 3.7e-16 88.6 72 70.8
MD15G1262800 Malus domestica HOM05D006100 ORTHO05D007539 3.7e-16 88.6 70 65.7
Sed0016253 Sechium edule HOM05D006100 ORTHO05D007539 3.7e-16 88.6 70 64.3
PSO541G1538 Papaver somniferum HOM05D006100 ORTHO05D007539 4.8e-16 88.2 70 70.0
Cfa004303 Carpinus fangiana HOM05D006100 ORTHO05D007539 8.3e-16 87.4 80 61.2
FvH4_1g13380 Fragaria vesca HOM05D006100 ORTHO05D007539 1.1e-15 87.0 69 65.2
FAN19G2702 Fragaria x ananassa HOM05D006100 ORTHO05D007539 1.1e-15 87.0 69 65.2
FAN23G1739 Fragaria x ananassa HOM05D006100 ORTHO05D007539 1.8e-15 86.3 63 69.8
FAN26G0501 Fragaria x ananassa HOM05D006100 ORTHO05D007539 5.4e-15 84.7 69 63.8
RcHm_v2.0_Chr2g0101741 Rosa chinensis HOM05D006100 ORTHO05D007539 7.0e-15 84.3 69 60.9
Migut.H00995 Erythranthe guttata HOM05D006100 ORTHO05D007539 1.2e-14 83.6 78 61.5
PGR119G0418 Punica granatum HOM05D006100 ORTHO05D007539 1.2e-14 83.6 64 67.2
Rhsim08G0115500 Rhododendron simsii HOM05D006100 ORTHO05D007539 1.2e-14 83.6 67 65.7
FAN28G0382 Fragaria x ananassa HOM05D006100 ORTHO05D007539 1.6e-14 83.2 61 70.5
Oeu009416.1 Olea europaea HOM05D006100 ORTHO05D007539 1.6e-14 83.2 81 56.8
FvH4_1g13390 Fragaria vesca HOM05D006100 ORTHO05D007539 2.0e-14 82.8 66 66.7
FAN19G3207 Fragaria x ananassa HOM05D006100 ORTHO05D007539 2.0e-14 82.8 66 66.7
FAN28G1903 Fragaria x ananassa HOM05D006100 ORTHO05D007539 2.7e-14 82.4 67 64.2
Oeu041448.1 Olea europaea HOM05D006100 ORTHO05D007539 2.7e-14 82.4 104 47.1
Cpa.g.sc6.110 Carica papaya HOM05D006100 ORTHO05D007539 3.5e-14 82.0 65 69.2
RcHm_v2.0_Chr2g0101751 Rosa chinensis HOM05D006100 ORTHO05D007539 5.9e-14 81.3 69 60.9
CANSAT01G1084 Cannabis sativa HOM05D006100 ORTHO05D007539 7.7e-14 80.9 67 62.7
Glyma.11G067900 Glycine max HOM05D006100 ORTHO05D007539 7.7e-14 80.9 68 66.2
Eucgr.I02450 Eucalyptus grandis HOM05D006100 ORTHO05D007539 1.0e-13 80.5 64 65.6
CSS0018588 Camellia sinensis var. sinensis HOM05D006100 ORTHO05D007539 1.3e-13 80.1 71 60.6
ClCG01G019510 Citrullus lanatus HOM05D006100 ORTHO05D007539 1.3e-13 80.1 122 43.4
vmacro17841 Vaccinium macrocarpon HOM05D006100 ORTHO05D007539 1.3e-13 80.1 70 57.1
MSTRG.2759 Avicennia marina HOM05D006100 ORTHO05D007539 1.7e-13 79.7 72 59.7
Gohir.D10G093000 Gossypium hirsutum HOM05D006100 ORTHO05D007539 2.2e-13 79.3 72 61.1
Os03g0723400 Oryza sativa ssp. japonica HOM05D006100 ORTHO05D007539 8.5e-13 77.4 65 61.5
SGA_v2.0_scaffold276G46633 Striga asiatica HOM05D006100 ORTHO05D007539 1.9e-12 76.3 67 64.2
GSVIVG01018974001 Vitis vinifera HOM05D006100 ORTHO05D007539 1.9e-12 76.3 62 62.9
Nitab4.5_0003233g0010 Nicotiana tabacum HOM05D006100 ORTHO05D007539 2.5e-12 75.9 67 61.2
Nitab4.5_0001385g0150 Nicotiana tabacum HOM05D006100 ORTHO05D007539 5.5e-12 74.7 62 69.4
Nn5g29589 Nelumbo nucifera HOM05D006100 ORTHO05D007539 7.2e-12 74.3 63 65.1
Nitab4.5_0000434g0150 Nicotiana tabacum HOM05D006100 ORTHO05D007539 7.2e-12 74.3 62 69.4
FAN26G1330 Fragaria x ananassa HOM05D006100 ORTHO05D007539 9.4e-12 73.9 62 62.9
Manes.01G135000 Manihot esculenta HOM05D006100 ORTHO05D007539 2.1e-11 72.8 51 74.5
FAN23G0264 Fragaria x ananassa HOM05D006100 ORTHO05D007539 2.7e-11 72.4 67 61.2
TPR.G34229 Trifolium pratense HOM05D006100 ORTHO05D007539 6.1e-11 71.2 46 76.1
PGSC0003DMG400015478 Solanum tuberosum HOM05D006100 ORTHO05D007539 1.0e-10 70.5 70 57.1
CsaV3_6G046200 Cucumis sativus L. HOM05D006100 ORTHO05D007539 1.4e-10 70.1 68 58.8
Peaxi162Scf00008g03716 Petunia axillaris HOM05D006100 ORTHO05D007539 1.4e-10 70.1 62 61.3
Peaxi162Scf00515g00519 Petunia axillaris HOM05D006100 ORTHO05D007539 1.8e-10 69.7 68 63.2
Solyc02g062770.2 Solanum lycopersicum HOM05D006100 ORTHO05D007539 4.0e-10 68.6 67 55.2
Sopen02g013800 Solanum pennellii HOM05D006100 ORTHO05D007539 6.8e-10 67.8 70 55.7
EL10Ac6g15568 Beta vulgaris HOM05D006100 ORTHO05D007539 1.2e-09 67.0 68 55.9
Solyc02g085330.1 Solanum lycopersicum HOM05D006100 ORTHO05D007539 2.0e-09 66.2 68 60.3
Sopen02g030020 Solanum pennellii HOM05D006100 ORTHO05D007539 2.0e-09 66.2 68 60.3
CAN.G358.97 Capsicum annuum HOM05D006100 ORTHO05D007539 2.6e-09 65.9 63 61.9
Prupe.7G153800 Prunus persica HOM05D006100 ORTHO05D007539 2.6e-09 65.9 61 57.4
Glyma.16G140500 Glycine max HOM05D006100 ORTHO05D007539 4.4e-09 65.1 67 56.7
CDE01G0731 Ceratophyllum demersum HOM05D006100 ORTHO05D007539 5.7e-09 64.7 66 57.6
MBI16_g38642_MAGBIO Magnolia biondii HOM05D006100 ORTHO05D007539 5.7e-09 64.7 85 47.1
AUR62004046 Chenopodium quinoa HOM05D006100 ORTHO05D007539 9.8e-09 63.9 71 49.3
unitig_899.g14492 Utricularia gibba HOM05D006100 ORTHO05D007539 9.8e-09 63.9 67 55.2
Oeu033643.1 Olea europaea HOM05D006100 ORTHO05D007539 1.7e-08 63.2 50 66.0
TAR376G0804 Trochodendron aralioides HOM05D001794 ORTHO05D004177 1.7e-08 63.2 50 62.0
HanXRQChr16g0530351 Helianthus annuus HOM05D006100 ORTHO05D007539 2.2e-08 62.8 75 44.0
AUR62007561 Chenopodium quinoa HOM05D006100 ORTHO05D007539 3.7e-08 62.0 74 48.6
DCAR_025920 Daucus carota HOM05D006100 ORTHO05D007539 4.9e-08 61.6 61 55.7
CSS0029658 Camellia sinensis var. sinensis HOM05D006100 ORTHO05D007539 8.3e-08 60.8 46 63.0
Nitab4.5_0000136g0440 Nicotiana tabacum HOM05D006100 ORTHO05D007539 3.1e-07 58.9 98 42.9
MD02G1148700 Malus domestica HOM05D006100 ORTHO05D007539 4.1e-07 58.5 69 44.9
unitig_21.g20955 Utricularia gibba HOM05D003234 ORTHO05D003635 5.4e-07 58.2 77 49.4
Lj4g0020328 Lotus japonicus HOM05D006100 ORTHO05D007539 9.2e-07 57.4 69 50.7
MELO3C007824.2 Cucumis melo HOM05D006100 ORTHO05D007539 5.9e-06 54.7 45 62.2
Gorai.011G102200 Gossypium raimondii HOM05D006100 ORTHO05D007539 5.9e-06 54.7 44 59.1


User provided reference genes

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