Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
BcaC03g18261 Brassica carinata HOM05D004672 ORTHO05D005732 1.2e-275 952.6 483 100.0
BraA06t26051Z Brassica rapa HOM05D004672 ORTHO05D005732 2.9e-210 735.3 623 66.0
A06p31080 Brassica napus HOM05D004672 ORTHO05D005732 2.5e-209 732.3 623 65.8
Thhalv10003522m.g Eutrema salsugineum HOM05D004672 ORTHO05D005732 6.1e-208 727.6 623 65.2
C03p61860 Brassica napus HOM05D004672 ORTHO05D005732 1.0e-207 726.9 623 65.3
BolC3t18446H Brassica oleracea HOM05D004672 ORTHO05D005732 1.0e-207 726.9 623 65.3
Sp2g27510 Schrenkiella parvula HOM05D004672 ORTHO05D005732 1.4e-207 726.5 623 65.5
CARHR278390 Cardamine hirsuta HOM05D004672 ORTHO05D005732 6.8e-207 724.2 623 64.7
Carub.0008s2522 Capsella rubella HOM05D004672 ORTHO05D005732 8.9e-207 723.8 623 65.2
AT5G64420 Arabidopsis thaliana HOM05D004672 ORTHO05D005732 7.0e-204 714.1 623 64.0
AL8G41790 Arabidopsis lyrata HOM05D004672 ORTHO05D005732 4.5e-203 711.4 623 64.0
Aa31LG1G17480 Aethionema arabicum HOM05D004672 ORTHO05D005732 1.0e-194 683.7 621 61.2
THA.LOC104799703 Tarenaya hassleriana HOM05D004672 ORTHO05D005732 4.7e-176 621.7 621 56.4
THA.LOC104818461 Tarenaya hassleriana HOM05D004672 ORTHO05D005732 8.7e-162 574.3 623 53.6
CiPaw.06G160900 Carya illinoinensis HOM05D004672 ORTHO05D005732 8.1e-152 541.2 611 50.9
Hma1.2p1_0908F.1_g235670 Hydrangea macrophylla HOM05D004672 ORTHO05D005732 1.3e-149 533.9 611 49.9
Dinv08968 Davidia involucrata HOM05D004672 ORTHO05D005732 2.2e-149 533.1 610 50.3
TWI59G0488 Tripterygium wilfordii HOM05D004672 ORTHO05D005732 1.6e-147 526.9 609 49.4
Thecc.02G125000 Theobroma cacao HOM05D004672 ORTHO05D005732 2.7e-147 526.2 608 48.8
Ciclev10027696m.g Citrus clementina HOM05D004672 ORTHO05D005732 6.0e-147 525.0 608 49.3
Duzib132G0551 Durio zibethinus HOM05D004672 ORTHO05D005732 6.0e-147 525.0 608 48.5
CSS0000676 Camellia sinensis var. sinensis HOM05D004672 ORTHO05D005732 1.9e-145 520.0 610 48.7
QL11p026607 Quercus lobata HOM05D004672 ORTHO05D005732 4.3e-145 518.8 625 48.3
Actinidia02411 Actinidia chinensis HOM05D004672 ORTHO05D005732 7.4e-145 518.1 606 48.8
Gohir.D13G048000 Gossypium hirsutum HOM05D004672 ORTHO05D005732 7.4e-145 518.1 607 47.8
Potri.009G079900 Populus trichocarpa HOM05D004672 ORTHO05D005732 7.4e-145 518.1 615 47.8
FAN15G2368 Fragaria x ananassa HOM05D004672 ORTHO05D005732 3.7e-144 515.8 610 48.0
Cfa004803 Carpinus fangiana HOM05D004672 ORTHO05D005732 4.8e-144 515.4 611 48.3
Gorai.013G053600 Gossypium raimondii HOM05D004672 ORTHO05D005732 1.1e-143 514.2 609 47.5
Gohir.A13G049500 Gossypium hirsutum HOM05D004672 ORTHO05D005732 1.4e-143 513.8 607 47.6
FvH4_2g11160 Fragaria vesca HOM05D004672 ORTHO05D005732 3.1e-143 512.7 609 47.9
GSVIVG01038520001 Vitis vinifera HOM05D004672 ORTHO05D005732 3.1e-143 512.7 591 49.1
Lj9C342T12 Lonicera japonica HOM05D004672 ORTHO05D005732 4.0e-143 512.3 611 48.6
MD05G1049800 Malus domestica HOM05D004672 ORTHO05D005732 6.9e-143 511.5 611 47.6
RcHm_v2.0_Chr6g0269481 Rosa chinensis HOM05D004672 ORTHO05D005732 6.9e-143 511.5 609 47.6
MD10G1056900 Malus domestica HOM05D004672 ORTHO05D005732 1.2e-142 510.8 609 47.6
CANSAT54G0310 Cannabis sativa HOM05D004672 ORTHO05D005732 1.5e-142 510.4 610 47.7
Prupe.8G075100 Prunus persica HOM05D004672 ORTHO05D005732 2.6e-142 509.6 609 47.9
FAN27G2619 Fragaria x ananassa HOM05D004672 ORTHO05D005732 3.4e-142 509.2 609 47.8
Sabra16G0178000 Salix brachista HOM05D004672 ORTHO05D005732 3.4e-142 509.2 610 47.4
FAN24G1132 Fragaria x ananassa HOM05D004672 ORTHO05D005732 5.8e-142 508.4 609 47.8
FAN20G2876 Fragaria x ananassa HOM05D004672 ORTHO05D005732 7.6e-142 508.1 609 47.8
Manes.10G094200 Manihot esculenta HOM05D004672 ORTHO05D005732 1.0e-141 507.7 613 48.0
CSS0013617 Camellia sinensis var. sinensis HOM05D004672 ORTHO05D005732 2.2e-141 506.5 610 48.2
TAR628G0793 Trochodendron aralioides HOM05D004672 ORTHO05D005732 8.4e-141 504.6 608 49.2
Phvul.006G199700 Phaseolus vulgaris HOM05D004672 ORTHO05D005732 1.4e-140 503.8 608 48.2
Atru.chr6.1353 Acer truncatum HOM05D004672 ORTHO05D005732 2.5e-140 503.1 566 49.6
Sabra09G0061900 Salix brachista HOM05D004672 ORTHO05D005732 3.2e-140 502.7 604 48.3
VMungo0540G1852 Vigna mungo HOM05D004672 ORTHO05D005732 3.2e-140 502.7 609 47.9
Glyma.15G060100 Glycine max HOM05D004672 ORTHO05D005732 4.2e-140 502.3 609 47.5
Potri.001G285600 Populus trichocarpa HOM05D004672 ORTHO05D005732 4.2e-140 502.3 609 47.8
Nn1g07286 Nelumbo nucifera HOM05D004672 ORTHO05D005732 5.5e-140 501.9 607 48.6
Glyma.13G254600 Glycine max HOM05D004672 ORTHO05D005732 1.2e-139 500.7 609 47.5
ClCG09G016480 Citrullus lanatus HOM05D004672 ORTHO05D005732 1.6e-139 500.4 611 47.6
vmacro19391 Vaccinium macrocarpon HOM05D004672 ORTHO05D005732 2.1e-139 500.0 611 48.4
Sed0014665 Sechium edule HOM05D004672 ORTHO05D005732 2.7e-139 499.6 611 47.0
arahy.Tifrunner.gnm1.ann1.BVLY6P Arachis hypogaea HOM05D004672 ORTHO05D005732 7.9e-139 498.0 609 47.3
Psat1g212840 Pisum sativum HOM05D004672 ORTHO05D005732 1.0e-138 497.7 610 47.9
Haze_10395 Corylus avellana HOM05D004672 ORTHO05D005732 1.8e-138 496.9 645 46.2
MELO3C018559.2 Cucumis melo HOM05D004672 ORTHO05D005732 1.8e-138 496.9 611 47.8
Ca_00181_v3 Cicer arietinum L. HOM05D004672 ORTHO05D005732 2.3e-138 496.5 609 47.5
Medtr2g010110 Medicago truncatula HOM05D004672 ORTHO05D005732 2.3e-138 496.5 612 48.2
Aqoxy6G00637 Aquilegia oxysepala HOM05D004672 ORTHO05D005732 3.9e-138 495.7 610 47.5
MSTRG.16633 Avicennia marina HOM05D004672 ORTHO05D005732 8.7e-138 494.6 607 46.8
Sed0001753 Sechium edule HOM05D004672 ORTHO05D005732 1.5e-137 493.8 611 46.6
SalBow6G5524 Salvia bowleyana HOM05D004672 ORTHO05D005732 4.3e-137 492.3 607 47.1
arahy.Tifrunner.gnm1.ann1.GE1IDC Arachis hypogaea HOM05D004672 ORTHO05D005732 7.4e-137 491.5 626 46.3
SGA_v2.0_scaffold83G26394 Striga asiatica HOM05D004672 ORTHO05D005732 7.4e-137 491.5 607 46.1
Lalb_Chr18g0060301 Lupinus albus HOM05D004672 ORTHO05D005732 4.8e-136 488.8 608 48.0
CsaV3_7G007430 Cucumis sativus L. HOM05D004672 ORTHO05D005732 8.2e-136 488.0 611 47.5
Eucgr.I02582 Eucalyptus grandis HOM05D004672 ORTHO05D005732 1.1e-135 487.6 611 46.5
Nitab4.5_0005163g0020 Nicotiana tabacum HOM05D004672 ORTHO05D005732 1.1e-135 487.6 609 46.1
EL10Ac9g22127 Beta vulgaris HOM05D004672 ORTHO05D005732 1.4e-135 487.3 608 46.9
Hund06479 Selenicereus undatus HOM05D004672 ORTHO05D005732 5.3e-135 485.3 609 45.3
DCAR_021895 Daucus carota HOM05D004672 ORTHO05D005732 1.2e-134 484.2 611 46.3
AUR62030919 Chenopodium quinoa HOM05D004672 ORTHO05D005732 2.0e-134 483.4 608 46.7
Nitab4.5_0002335g0010 Nicotiana tabacum HOM05D004672 ORTHO05D005732 2.0e-134 483.4 611 45.8
Cc02_g20590 Coffea canephora HOM05D004672 ORTHO05D005732 2.6e-134 483.0 608 46.7
PGR142G1680 Punica granatum HOM05D004672 ORTHO05D005732 7.7e-134 481.5 608 46.7
Lsat_1_v5_gn_9_113661 Lactuca sativa HOM05D004672 ORTHO05D005732 2.9e-133 479.6 612 46.6
Lsat_1_v5_gn_9_113760 Lactuca sativa HOM05D004672 ORTHO05D005732 2.9e-133 479.6 612 46.6
HanXRQChr03g0071051 Helianthus annuus HOM05D004672 ORTHO05D005732 6.5e-133 478.4 610 45.9
Lj6g0005540 Lotus japonicus HOM05D004672 ORTHO05D005732 8.5e-133 478.0 608 47.5
Ah.01g024170 Amaranthus hybridus HOM05D004672 ORTHO05D005732 3.2e-132 476.1 610 46.6
AUR62027080 Chenopodium quinoa HOM05D004672 ORTHO05D005732 9.4e-132 474.6 608 46.1
MBI16_g10454_MAGBIO Magnolia biondii HOM05D004672 ORTHO05D005732 1.2e-131 474.2 610 46.1
Migut.B00522 Erythranthe guttata HOM05D004672 ORTHO05D005732 7.9e-131 471.5 606 46.0
Solyc01g106220.4 Solanum lycopersicum HOM05D004672 ORTHO05D005732 7.9e-131 471.5 608 45.1
Oeu042393.4 Olea europaea HOM05D004672 ORTHO05D005732 1.4e-130 470.7 579 46.8
Sopen01g048630 Solanum pennellii HOM05D004672 ORTHO05D005732 3.9e-130 469.2 608 44.7
PGSC0003DMG400010676 Solanum tuberosum HOM05D004672 ORTHO05D005732 1.5e-129 467.2 608 45.1
Oeu033795.2 Olea europaea HOM05D004672 ORTHO05D005732 1.8e-127 460.3 621 43.6
PSO017G1610 Papaver somniferum HOM05D004672 ORTHO05D005732 5.3e-127 458.8 612 44.4
TPR.G32637 Trifolium pratense HOM05D004672 ORTHO05D005732 6.9e-127 458.4 641 43.7
CAN.G504.43 Capsicum annuum HOM05D004672 ORTHO05D005732 1.2e-126 457.6 608 44.1
PSO478G3191 Papaver somniferum HOM05D004672 ORTHO05D005732 2.9e-125 453.0 619 43.8
Peaxi162Scf00016g03257 Petunia axillaris HOM05D004672 ORTHO05D005732 1.2e-123 447.6 607 43.7
unitig_744.g24197 Utricularia gibba HOM05D004672 ORTHO05D005732 1.8e-122 443.7 606 43.4
Duzib132G1253 Durio zibethinus HOM05D004672 ORTHO05D005732 2.6e-121 439.9 578 44.8
HPP92_024099 Vanilla planifolia HOM05D004672 ORTHO05D005732 1.8e-119 433.7 619 42.6
SHI04921 Sapria himalayana HOM05D004672 ORTHO05D005732 2.0e-118 430.3 614 42.5
Nitab4.5_0005163g0030 Nicotiana tabacum HOM05D004672 ORTHO05D005732 2.9e-117 426.4 599 42.6
ATR0800G038 Amborella trichopoda HOM05D004672 ORTHO05D005732 9.4e-116 421.4 602 42.2
ECA240G2418 Erigeron canadensis HOM05D004672 ORTHO05D005732 4.4e-113 412.5 499 46.7
Peaxi162Scf00016g03462 Petunia axillaris HOM05D004672 ORTHO05D005732 1.6e-110 404.1 574 42.5
Sc06g0005830 Simmondsia chinensis HOM05D004672 ORTHO05D005732 5.5e-108 395.6 511 44.0
CDE05G2025 Ceratophyllum demersum HOM05D004672 ORTHO05D005732 1.2e-107 394.4 610 39.3
Os02g0135700 Oryza sativa ssp. japonica HOM05D004672 ORTHO05D005732 1.6e-107 394.0 621 39.9
Zm00001eb231630 Zea mays HOM05D004672 ORTHO05D005732 3.0e-106 389.8 620 40.0
Dinv16031 Davidia involucrata HOM05D004672 ORTHO05D005732 2.9e-85 320.1 349 51.3
Actinidia00323 Actinidia chinensis HOM05D004672 ORTHO05D005732 4.4e-81 306.2 364 48.1
SEGI_31749 Sequoiadendron giganteum HOM05D004672 ORTHO05D005732 4.9e-80 302.8 565 35.4
BolC2t12404H Brassica oleracea HOM05D004672 ORTHO05D005732 5.0e-77 292.7 224 73.2
AL8G35270 Arabidopsis lyrata HOM05D004672 ORTHO05D005732 2.3e-74 283.9 248 63.3
C02p63340 Brassica napus HOM05D004672 ORTHO05D005732 3.4e-73 280.0 250 65.6
Cpa.g.sc20.40 Carica papaya HOM05D004672 ORTHO05D005732 1.5e-65 254.6 329 45.9
vmacro06228 Vaccinium macrocarpon HOM05D004672 ORTHO05D005732 8.6e-61 238.8 385 41.6
Pp3c3_9940 Physcomitrium patens HOM05D004672 ORTHO05D005732 1.4e-58 231.5 547 30.3
BcaB07g29742 Brassica carinata HOM05D004672 ORTHO05D005732 3.1e-58 230.3 174 74.1
AagrBONN_evm.TU.Sc2ySwM_368.3324__3325 Anthoceros agrestis HOM05D004672 ORTHO05D005732 2.9e-56 223.8 616 28.4
Pp3c13_11570 Physcomitrium patens HOM05D004672 ORTHO05D005732 6.0e-54 216.1 557 28.7
AagrBONN_evm.TU.Sc2ySwM_228.3115__3116 Anthoceros agrestis HOM05D004672 ORTHO05D005732 1.0e-53 215.3 627 27.8
Gorai.005G227500 Gossypium raimondii HOM05D004672 ORTHO05D005732 3.0e-53 213.8 366 37.4
Gohir.D02G202550 Gossypium hirsutum HOM05D004672 ORTHO05D005732 8.7e-53 212.2 366 37.2
SMO358G0564 Selaginella moellendorffii HOM05D004672 ORTHO05D005732 2.9e-48 197.2 484 28.5
Mapoly0136s0021 Marchantia polymorpha HOM05D004672 ORTHO05D005732 2.0e-41 174.5 447 29.1
CBR_g52045 Chara braunii HOM05D004672 ORTHO05D005732 3.8e-32 143.7 417 27.3
Nitab4.5_0001405g0010 Nicotiana tabacum HOM05D004672 ORTHO05D005732 1.0e-24 119.0 176 40.3
Psat5g050320 Pisum sativum HOM05D004672 ORTHO05D005732 2.5e-23 114.4 83 66.3
MCO10G087 Micromonas commoda HOM05D004672 ORTHO05D005732 4.6e-14 83.6 443 23.9
Medtr2g086320 Medicago truncatula HOM05D004672 ORTHO05D005732 7.9e-14 82.8 96 51.0
Nitab4.5_0001405g0020 Nicotiana tabacum HOM05D004672 ORTHO05D005732 1.0e-13 82.4 89 47.2
Nitab4.5_0003026g0050 Nicotiana tabacum HOM05D004672 ORTHO05D005732 1.1e-12 79.0 241 27.4
Nn8g41203 Nelumbo nucifera HOM05D004672 ORTHO05D005732 3.3e-12 77.4 67 50.7
Nitab4.5_0001405g0040 Nicotiana tabacum HOM05D004672 ORTHO05D005732 6.3e-11 73.2 114 40.4
Psat0s7528g0040 Pisum sativum HOM05D003881 ORTHO05D004343 1.8e-10 71.6 69 52.2
Psat1g034120 Pisum sativum HOM05D003881 ORTHO05D004343 1.8e-10 71.6 69 52.2
Zm00001eb156660 Zea mays HOM05D004672 ORTHO05D005732 6.9e-10 69.7 66 45.5
Cre01.g012350 Chlamydomonas reinhardtii HOM05D004672 ORTHO05D005732 2.6e-09 67.8 384 22.1
unitig_21.g20701 Utricularia gibba HOM05D004672 ORTHO05D005732 7.9e-06 56.2 49 53.1


User provided reference genes

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