Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
BcaC03g18203 Brassica carinata HOM05D004068 ORTHO05D004700 1.9e-113 412.5 209 100.0
C09p01400 Brassica napus HOM05D004068 ORTHO05D004700 2.2e-53 213.0 110 98.2
BolC9t53073H Brassica oleracea HOM05D004068 ORTHO05D004700 2.2e-53 213.0 110 98.2
BcaC04g24068 Brassica carinata HOM05D004068 ORTHO05D004700 1.9e-52 209.9 110 96.4
A02p42700 Brassica napus HOM05D004068 ORTHO05D004700 1.7e-50 203.4 107 98.1
C02p62690 Brassica napus HOM05D004068 ORTHO05D004700 7.3e-49 198.0 107 96.3
BraA09t35801Z Brassica rapa HOM05D004068 ORTHO05D004700 5.6e-41 171.8 115 81.7
A09p01340 Brassica napus HOM05D004068 ORTHO05D004700 1.3e-40 170.6 113 84.1
C02p62680 Brassica napus HOM05D018547 ORTHO05D004700 1.4e-39 167.2 82 98.8
BcaB01g02105 Brassica carinata HOM05D004068 ORTHO05D004700 1.1e-36 157.5 118 71.2
Sp6g01730 Schrenkiella parvula HOM05D004068 ORTHO05D004700 1.6e-35 153.7 120 71.7
Thhalv10028926m.g Eutrema salsugineum HOM05D004068 ORTHO05D004700 6.9e-31 138.3 131 60.3
Thhalv10028927m.g Eutrema salsugineum HOM05D004068 ORTHO05D004700 6.9e-31 138.3 131 60.3
Carub.0006s3535 Capsella rubella HOM05D004068 ORTHO05D004700 1.5e-30 137.1 122 66.4
AL6G51410 Arabidopsis lyrata HOM05D004068 ORTHO05D004700 9.9e-30 134.4 117 65.0
CARHR249850 Cardamine hirsuta HOM05D004068 ORTHO05D004700 6.4e-29 131.7 120 63.3
AT4G01883 Arabidopsis thaliana HOM05D004068 ORTHO05D004700 1.1e-28 131.0 118 62.7
Aa31LG5G1470 Aethionema arabicum HOM05D004068 ORTHO05D004700 3.0e-26 122.9 111 60.4
THA.LOC104801319 Tarenaya hassleriana HOM05D004068 ORTHO05D004700 9.6e-17 91.3 116 50.0
C09p01410 Brassica napus HOM05D018547 ORTHO05D024578 1.2e-14 84.3 75 66.7
HanXRQChr16g0512461 Helianthus annuus HOM05D004068 ORTHO05D004700 1.1e-12 77.8 125 39.2
Thhalv10008722m.g Eutrema salsugineum HOM05D004068 ORTHO05D004700 1.4e-12 77.4 75 48.0
Ca_10252_v3 Cicer arietinum L. HOM05D004068 ORTHO05D004700 3.2e-12 76.3 109 41.3
COL.COLO4_23168 Corchorus olitorius HOM05D004068 ORTHO05D004700 3.2e-12 76.3 112 41.1
GSVIVG01028194001 Vitis vinifera HOM05D004068 ORTHO05D004700 3.2e-12 76.3 98 43.9
Ciclev10022090m.g Citrus clementina HOM05D004068 ORTHO05D004700 5.5e-12 75.5 48 64.6
Sc17g0000200 Simmondsia chinensis HOM05D004068 ORTHO05D004700 5.5e-12 75.5 60 55.0
Thecc.01G321500 Theobroma cacao HOM05D004068 ORTHO05D004700 5.5e-12 75.5 82 47.6
ECA236G4612 Erigeron canadensis HOM05D004068 ORTHO05D004700 7.1e-12 75.1 114 38.6
Cfa004871 Carpinus fangiana HOM05D004068 ORTHO05D004700 9.3e-12 74.7 121 38.0
Glyma.10G009700 Glycine max HOM05D004068 ORTHO05D004700 9.3e-12 74.7 120 40.0
TWI14G0788 Tripterygium wilfordii HOM05D004068 ORTHO05D004700 1.2e-11 74.3 119 42.0
CiPaw.08G084800 Carya illinoinensis HOM05D004068 ORTHO05D004700 1.6e-11 73.9 51 58.8
arahy.Tifrunner.gnm1.ann1.20WW32 Arachis hypogaea HOM05D004068 ORTHO05D004700 2.1e-11 73.6 50 62.0
arahy.Tifrunner.gnm1.ann1.G5UTBZ Arachis hypogaea HOM05D004068 ORTHO05D004700 2.1e-11 73.6 50 62.0
Phvul.007G211200 Phaseolus vulgaris HOM05D004068 ORTHO05D004700 2.1e-11 73.6 50 58.0
RcHm_v2.0_Chr3g0486891 Rosa chinensis HOM05D004068 ORTHO05D004700 2.1e-11 73.6 85 47.1
THA.LOC104801318 Tarenaya hassleriana HOM05D004068 ORTHO05D004700 2.1e-11 73.6 72 52.8
CSS0008406 Camellia sinensis var. sinensis HOM05D004068 ORTHO05D004700 2.7e-11 73.2 53 54.7
Potri.002G190300 Populus trichocarpa HOM05D004068 ORTHO05D004700 2.7e-11 73.2 45 68.9
SalBow6G1478 Salvia bowleyana HOM05D004068 ORTHO05D004700 2.7e-11 73.2 113 38.9
CARHR001800 Cardamine hirsuta HOM05D004068 ORTHO05D004700 3.5e-11 72.8 66 56.1
SGA_v2.0_scaffold417G51268 Striga asiatica HOM05D004068 ORTHO05D004700 3.5e-11 72.8 45 66.7
Actinidia06383 Actinidia chinensis HOM05D004068 ORTHO05D004700 4.6e-11 72.4 120 35.0
Eucgr.H00894 Eucalyptus grandis HOM05D004068 ORTHO05D004700 4.6e-11 72.4 61 54.1
Gohir.A07G130200 Gossypium hirsutum HOM05D004068 ORTHO05D004700 4.6e-11 72.4 51 58.8
Gohir.D07G134600 Gossypium hirsutum HOM05D004068 ORTHO05D004700 4.6e-11 72.4 51 58.8
Gorai.001G146300 Gossypium raimondii HOM05D004068 ORTHO05D004700 4.6e-11 72.4 51 58.8
Hma1.2p1_0484F.1_g162840 Hydrangea macrophylla HOM05D004068 ORTHO05D004700 4.6e-11 72.4 54 53.7
EL10As5g23587 Beta vulgaris HOM05D004068 ORTHO05D004700 6.1e-11 72.0 76 46.1
Glyma.02G009000 Glycine max HOM05D004068 ORTHO05D004700 6.1e-11 72.0 111 40.5
Medtr1g086340 Medicago truncatula HOM05D004068 ORTHO05D004700 6.1e-11 72.0 100 41.0
VMungo0720G2238 Vigna mungo HOM05D004068 ORTHO05D004700 6.1e-11 72.0 50 56.0
AL1G11820 Arabidopsis lyrata HOM05D004068 ORTHO05D004700 7.9e-11 71.6 50 62.0
AT1G02475 Arabidopsis thaliana HOM05D004068 ORTHO05D004700 7.9e-11 71.6 50 62.0
DCAR_018255 Daucus carota HOM05D004068 ORTHO05D004700 7.9e-11 71.6 77 46.8
Duzib211G0484 Durio zibethinus HOM05D004068 ORTHO05D004700 7.9e-11 71.6 77 48.1
Manes.05G011200 Manihot esculenta HOM05D004068 ORTHO05D004700 7.9e-11 71.6 83 45.8
PGR083G2849 Punica granatum HOM05D004068 ORTHO05D004700 7.9e-11 71.6 53 56.6
Cpa.g.sc67.88 Carica papaya HOM05D004068 ORTHO05D004700 1.0e-10 71.2 117 37.6
FAN28G2449 Fragaria x ananassa HOM05D004068 ORTHO05D004700 1.0e-10 71.2 85 43.5
Sp1g01550 Schrenkiella parvula HOM05D004068 ORTHO05D004700 1.0e-10 71.2 52 59.6
TAR633G0425 Trochodendron aralioides HOM05D004068 ORTHO05D004700 1.3e-10 70.9 53 54.7
Migut.D00035 Erythranthe guttata HOM05D004068 ORTHO05D004700 1.8e-10 70.5 50 56.0
Prupe.3G006200 Prunus persica HOM05D004068 ORTHO05D004700 1.8e-10 70.5 83 44.6
Sopen01g029940 Solanum pennellii HOM05D004068 ORTHO05D004700 1.8e-10 70.5 112 37.5
Actinidia21362 Actinidia chinensis HOM05D004068 ORTHO05D004700 2.3e-10 70.1 109 36.7
Aa31LG1G10110 Aethionema arabicum HOM05D004068 ORTHO05D004700 2.3e-10 70.1 116 40.5
MSTRG.18070 Avicennia marina HOM05D004068 ORTHO05D004700 2.3e-10 70.1 50 58.0
Carub.0001s0155 Capsella rubella HOM05D004068 ORTHO05D004700 2.3e-10 70.1 114 40.4
Solyc01g068020.4 Solanum lycopersicum HOM05D004068 ORTHO05D004700 2.3e-10 70.1 112 37.5
A10p01270 Brassica napus HOM05D004068 ORTHO05D004700 3.0e-10 69.7 88 40.9
CANSAT54G1466 Cannabis sativa HOM05D004068 ORTHO05D004700 3.0e-10 69.7 50 56.0
AUR62024574 Chenopodium quinoa HOM05D004068 ORTHO05D004700 3.0e-10 69.7 49 63.3
QL12p034273 Quercus lobata HOM05D004068 ORTHO05D004700 3.0e-10 69.7 55 56.4
Haze_05111 Corylus avellana HOM05D004068 ORTHO05D004700 3.9e-10 69.3 51 56.9
FvH4_1g26710 Fragaria vesca HOM05D004068 ORTHO05D004700 3.9e-10 69.3 110 36.4
FAN23G3049 Fragaria x ananassa HOM05D004068 ORTHO05D004700 3.9e-10 69.3 50 54.0
FAN26G1054 Fragaria x ananassa HOM05D004068 ORTHO05D004700 3.9e-10 69.3 85 43.5
Gohir.A11G106800 Gossypium hirsutum HOM05D004068 ORTHO05D004700 3.9e-10 69.3 83 43.4
Nitab4.5_0000222g0260 Nicotiana tabacum HOM05D004068 ORTHO05D004700 3.9e-10 69.3 83 41.0
Sabra14G0085500 Salix brachista HOM05D004068 ORTHO05D004700 3.9e-10 69.3 113 39.8
C05p01270 Brassica napus HOM05D004068 ORTHO05D004700 5.1e-10 68.9 75 44.0
Lalb_Chr06g0167051 Lupinus albus HOM05D004068 ORTHO05D004700 5.1e-10 68.9 69 50.7
Nn3g21863 Nelumbo nucifera HOM05D004068 ORTHO05D004700 5.1e-10 68.9 50 58.0
Nitab4.5_0004218g0050 Nicotiana tabacum HOM05D004068 ORTHO05D004700 5.1e-10 68.9 97 43.3
Psat6g159440 Pisum sativum HOM05D004068 ORTHO05D004700 5.1e-10 68.9 114 38.6
unitig_90.g27445 Utricularia gibba HOM05D004068 ORTHO05D004700 5.1e-10 68.9 48 60.4
BolC5t28909H Brassica oleracea HOM05D004068 ORTHO05D004700 6.7e-10 68.6 75 44.0
MD09G1287000 Malus domestica HOM05D004068 ORTHO05D004700 6.7e-10 68.6 45 57.8
CSS0047755 Camellia sinensis var. sinensis HOM05D004068 ORTHO05D004700 8.7e-10 68.2 114 40.4
Lj5g0018153 Lotus japonicus HOM05D004068 ORTHO05D004700 8.7e-10 68.2 50 56.0
Peaxi162Scf00919g00026 Petunia axillaris HOM05D004068 ORTHO05D004700 8.7e-10 68.2 109 38.5
BcaB03g15774 Brassica carinata HOM05D004068 ORTHO05D004700 1.1e-09 67.8 68 48.5
Duzib138G0863 Durio zibethinus HOM05D004068 ORTHO05D004700 1.1e-09 67.8 112 34.8
MBI19_g32706_MAGBIO Magnolia biondii HOM05D004068 ORTHO05D004700 1.1e-09 67.8 57 54.4
Atru.chr5.916 Acer truncatum HOM05D004068 ORTHO05D004700 1.5e-09 67.4 45 62.2
CiPaw.07G122600 Carya illinoinensis HOM05D004068 ORTHO05D004700 1.5e-09 67.4 121 36.4
Rhsim13G0001400 Rhododendron simsii HOM05D004068 ORTHO05D004700 1.5e-09 67.4 125 38.4
BraA10t42405Z Brassica rapa HOM05D004068 ORTHO05D004700 1.9e-09 67.0 107 37.4
Cc01_g21940 Coffea canephora HOM05D004068 ORTHO05D004700 1.9e-09 67.0 62 48.4
TAR636G1362 Trochodendron aralioides HOM05D004068 ORTHO05D004700 1.9e-09 67.0 118 38.1
Zm00001eb131060 Zea mays HOM05D004068 ORTHO05D004700 1.9e-09 67.0 44 65.9
Gorai.007G119900 Gossypium raimondii HOM05D004068 ORTHO05D004700 2.5e-09 66.6 114 37.7
MD17G1279300 Malus domestica HOM05D004068 ORTHO05D004700 2.5e-09 66.6 113 37.2
Os01g0328600 Oryza sativa ssp. japonica HOM05D004068 ORTHO05D004700 2.5e-09 66.6 63 54.0
CsaV3_7G030310 Cucumis sativus L. HOM05D004068 ORTHO05D004700 3.3e-09 66.2 45 60.0
PSO357G0073 Papaver somniferum HOM05D004068 ORTHO05D004700 3.3e-09 66.2 45 60.0
PGR083G1259 Punica granatum HOM05D004068 ORTHO05D004700 3.3e-09 66.2 53 52.8
AUR62011741 Chenopodium quinoa HOM05D004068 ORTHO05D004700 4.3e-09 65.9 50 60.0
Sed0027961 Sechium edule HOM05D004068 ORTHO05D004700 4.3e-09 65.9 107 37.4
CSS0031477 Camellia sinensis var. sinensis HOM05D004068 ORTHO05D004700 5.7e-09 65.5 113 39.8
CAN.G100.22 Capsicum annuum HOM05D004068 ORTHO05D004700 5.7e-09 65.5 50 56.0
ATR0693G403 Amborella trichopoda HOM05D004068 ORTHO05D004700 7.4e-09 65.1 94 39.4
MELO3C023625.2 Cucumis melo HOM05D004068 ORTHO05D004700 7.4e-09 65.1 94 41.5
HanXRQChr06g0168031 Helianthus annuus HOM05D004068 ORTHO05D004700 7.4e-09 65.1 57 52.6
Potri.014G115400 Populus trichocarpa HOM05D004068 ORTHO05D004700 7.4e-09 65.1 45 62.2
PSO170G5617 Papaver somniferum HOM05D004068 ORTHO05D004700 9.7e-09 64.7 101 37.6
Sed0019105 Sechium edule HOM05D004068 ORTHO05D004700 9.7e-09 64.7 45 57.8
Solyc01g068030.3 Solanum lycopersicum HOM05D004068 ORTHO05D004700 9.7e-09 64.7 50 54.0
Sopen01g029950 Solanum pennellii HOM05D004068 ORTHO05D004700 9.7e-09 64.7 50 54.0
PGSC0003DMG400005200 Solanum tuberosum HOM05D004068 ORTHO05D004700 9.7e-09 64.7 50 54.0
CDE02G2955 Ceratophyllum demersum HOM05D000037 ORTHO05D001684 1.3e-08 64.3 45 62.2
Gohir.D11G111800 Gossypium hirsutum HOM05D004068 ORTHO05D004700 1.3e-08 64.3 44 59.1
Oeu052569.2 Olea europaea HOM05D004068 ORTHO05D004700 1.3e-08 64.3 46 58.7
Aqoxy2G02578 Aquilegia oxysepala HOM05D004068 ORTHO05D004700 2.8e-08 63.2 40 65.0
FAN19G0978 Fragaria x ananassa HOM05D004068 ORTHO05D004700 2.8e-08 63.2 105 35.2
TPR.G3089 Trifolium pratense HOM05D004068 ORTHO05D004700 4.8e-08 62.4 124 35.5
THA.LOC104801317 Tarenaya hassleriana HOM05D004068 ORTHO05D004700 6.3e-08 62.0 117 36.8
CAN.G257.121 Capsicum annuum HOM05D004068 ORTHO05D004700 1.1e-07 61.2 50 52.0
Oeu044746.1 Olea europaea HOM05D004068 ORTHO05D004700 4.1e-07 59.3 42 57.1
HPP92_010032 Vanilla planifolia HOM05D004068 ORTHO05D004700 9.0e-07 58.2 50 54.0
AL1G11810 Arabidopsis lyrata HOM05D004068 ORTHO05D004700 2.0e-06 57.0 53 45.3
AT1G02470 Arabidopsis thaliana HOM05D004068 ORTHO05D004700 2.0e-06 57.0 53 45.3
ClCG09G004770 Citrullus lanatus HOM05D004068 ORTHO05D004700 2.6e-06 56.6 112 37.5
Aa31LG1G10100 Aethionema arabicum HOM05D004068 ORTHO05D004700 3.4e-06 56.2 75 38.7
Carub.0001s0154 Capsella rubella HOM05D004068 ORTHO05D004700 3.4e-06 56.2 108 32.4
Sabra02G0165200 Salix brachista HOM05D004068 ORTHO05D004700 4.5e-06 55.8 37 67.6
C08p53250 Brassica napus HOM05D004068 ORTHO05D004700 7.7e-06 55.1 84 36.9
Lsat_1_v5_gn_8_167400 Lactuca sativa HOM05D004068 ORTHO05D004700 7.7e-06 55.1 38 57.9


User provided reference genes

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