Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
BcaC03g18078 Brassica carinata HOM05D003010 ORTHO05D003623 1.8e-81 305.8 151 100.0
A02p41560 Brassica napus HOM05D003010 ORTHO05D003623 1.8e-81 305.8 151 100.0
C02p61500 Brassica napus HOM05D003010 ORTHO05D003623 1.8e-81 305.8 151 100.0
BolC2t12200H Brassica oleracea HOM05D003010 ORTHO05D003623 1.8e-81 305.8 151 100.0
BraA02t09098Z Brassica rapa HOM05D003010 ORTHO05D003623 1.8e-81 305.8 151 100.0
BcaC06g33261 Brassica carinata HOM05D003010 ORTHO05D003623 1.9e-70 269.2 151 90.7
C07p45350 Brassica napus HOM05D003010 ORTHO05D003623 1.9e-70 269.2 151 90.7
BolC7t45056H Brassica oleracea HOM05D003010 ORTHO05D003623 1.9e-70 269.2 151 90.7
A03p47240 Brassica napus HOM05D003010 ORTHO05D003623 1.6e-69 266.2 149 90.6
BraA03t13851Z Brassica rapa HOM05D003010 ORTHO05D003623 1.6e-69 266.2 149 90.6
Sp2g24840 Schrenkiella parvula HOM05D003010 ORTHO05D003623 4.6e-69 264.6 151 89.4
BcaC06g33143 Brassica carinata HOM05D003010 ORTHO05D003623 1.0e-68 263.5 151 88.7
Thhalv10005478m.g Eutrema salsugineum HOM05D003010 ORTHO05D003623 1.0e-68 263.5 151 87.4
AT5G61630 Arabidopsis thaliana HOM05D003010 ORTHO05D003623 4.8e-66 254.6 151 88.1
AL8G38370 Arabidopsis lyrata HOM05D003010 ORTHO05D003623 4.0e-65 251.5 151 87.4
CARHR275430 Cardamine hirsuta HOM05D003010 ORTHO05D003623 7.6e-64 247.3 154 85.7
Carub.0008s2233 Capsella rubella HOM05D003010 ORTHO05D003623 8.4e-63 243.8 151 84.8
CARHR205640 Cardamine hirsuta HOM05D003010 ORTHO05D003623 7.6e-48 194.1 159 67.9
AT5G07490 Arabidopsis thaliana HOM05D003010 ORTHO05D003623 2.5e-46 189.1 157 69.4
AL6G17794 Arabidopsis lyrata HOM05D003010 ORTHO05D003623 5.5e-46 188.0 157 66.9
BcaB01g06045 Brassica carinata HOM05D003010 ORTHO05D003623 1.2e-45 186.8 158 65.2
BolC3t12913H Brassica oleracea HOM05D003010 ORTHO05D003623 1.2e-45 186.8 158 65.2
A03p03330 Brassica napus HOM05D003010 ORTHO05D003623 2.7e-45 185.7 158 64.6
BraA03t09685Z Brassica rapa HOM05D003010 ORTHO05D003623 2.7e-45 185.7 158 64.6
BcaB01g05694 Brassica carinata HOM05D003010 ORTHO05D003623 4.6e-45 184.9 158 65.2
C03p03770 Brassica napus HOM05D003010 ORTHO05D003623 6.7e-44 181.0 158 63.9
Sp6g35370 Schrenkiella parvula HOM05D003010 ORTHO05D003623 7.4e-43 177.6 133 73.7
Thhalv10015492m.g Eutrema salsugineum HOM05D003010 ORTHO05D003623 4.8e-42 174.9 157 65.0
BcaB01g05695 Brassica carinata HOM05D003010 ORTHO05D003623 1.1e-41 173.7 129 71.3
THA.LOC104801625 Tarenaya hassleriana HOM05D003010 ORTHO05D003623 1.7e-39 166.4 156 63.5
Aa31LG3G18910 Aethionema arabicum HOM05D003010 ORTHO05D003623 3.2e-38 162.2 155 61.3
Carub.0006s0648 Capsella rubella HOM05D003010 ORTHO05D003623 1.0e-36 157.1 142 64.1
Duzib205G1260 Durio zibethinus HOM05D003010 ORTHO05D003623 5.9e-32 141.4 120 63.3
Gohir.D09G249800 Gossypium hirsutum HOM05D003010 ORTHO05D003623 1.3e-31 140.2 149 55.7
Gorai.006G274200 Gossypium raimondii HOM05D003010 ORTHO05D003623 1.3e-31 140.2 149 55.7
Thecc.03G147400 Theobroma cacao HOM05D003010 ORTHO05D003623 2.9e-31 139.0 145 53.1
Gohir.A09G248900 Gossypium hirsutum HOM05D003010 ORTHO05D003623 5.0e-31 138.3 141 56.0
COL.COLO4_37328 Corchorus olitorius HOM05D000255 ORTHO05D000935 9.4e-30 134.0 132 58.3
Potri.001G080500 Populus trichocarpa HOM05D003010 ORTHO05D003623 6.1e-29 131.3 160 51.2
FAN03G0814 Fragaria x ananassa HOM05D000255 ORTHO05D003623 3.9e-28 128.6 152 49.3
Atru.chr1.925 Acer truncatum HOM05D003010 ORTHO05D003623 1.1e-27 127.1 159 50.3
RcHm_v2.0_Chr1g0373521 Rosa chinensis HOM05D003010 ORTHO05D003623 1.5e-27 126.7 137 52.6
FvH4_7g26830 Fragaria vesca HOM05D003010 ORTHO05D003623 4.4e-27 125.2 134 53.0
PGR042G0835 Punica granatum HOM05D003010 ORTHO05D003623 5.7e-27 124.8 148 51.4
FAN01G3086 Fragaria x ananassa HOM05D003010 ORTHO05D003623 2.8e-26 122.5 136 55.1
FAN06G5032 Fragaria x ananassa HOM05D000255 ORTHO05D000935 3.7e-26 122.1 134 52.2
Eucgr.A02926 Eucalyptus grandis HOM05D003010 ORTHO05D003623 4.8e-26 121.7 155 50.3
Lalb_Chr06g0169801 Lupinus albus HOM05D003010 ORTHO05D003623 1.4e-25 120.2 124 50.8
CiPaw.07G184100 Carya illinoinensis HOM05D003010 ORTHO05D003623 1.8e-25 119.8 127 54.3
QL09p027705 Quercus lobata HOM05D003010 ORTHO05D003623 5.3e-25 118.2 151 45.7
Phvul.007G138100 Phaseolus vulgaris HOM05D003010 ORTHO05D003623 6.9e-25 117.9 121 51.2
Prupe.2G271700 Prunus persica HOM05D003010 ORTHO05D003623 6.9e-25 117.9 140 51.4
arahy.Tifrunner.gnm1.ann1.I909QJ Arachis hypogaea HOM05D003010 ORTHO05D003623 1.2e-24 117.1 120 54.2
Glyma.10G193700 Glycine max HOM05D003010 ORTHO05D003623 1.2e-24 117.1 142 47.2
Lj5g0011838 Lotus japonicus HOM05D003010 ORTHO05D003623 1.5e-24 116.7 123 53.7
Cpa.g.sc13.241 Carica papaya HOM05D003010 ORTHO05D003623 2.6e-24 115.9 122 54.9
Glyma.20G196700 Glycine max HOM05D003010 ORTHO05D003623 2.6e-24 115.9 124 50.8
MD07G1247700 Malus domestica HOM05D003010 ORTHO05D003623 3.4e-24 115.5 150 47.3
Sabra01G0057700 Salix brachista HOM05D000255 ORTHO05D000935 5.9e-24 114.8 128 56.2
Cfa013595 Carpinus fangiana HOM05D000255 ORTHO05D000935 1.3e-23 113.6 123 54.5
ClCG07G017110 Citrullus lanatus HOM05D003010 ORTHO05D003623 1.3e-23 113.6 125 51.2
TWI39G0461 Tripterygium wilfordii HOM05D003010 ORTHO05D003623 2.2e-23 112.8 155 49.7
Medtr1g090200 Medicago truncatula HOM05D003010 ORTHO05D003623 2.9e-23 112.5 120 48.3
arahy.Tifrunner.gnm1.ann1.Y5VFEC Arachis hypogaea HOM05D003010 ORTHO05D003623 8.5e-23 110.9 120 52.5
Rhsim09G0189200 Rhododendron simsii HOM05D003010 ORTHO05D003623 1.6e-21 106.7 142 49.3
Actinidia01040 Actinidia chinensis HOM05D000255 ORTHO05D000935 3.6e-21 105.5 123 52.0
Cc02_g04820 Coffea canephora HOM05D003010 ORTHO05D003623 2.3e-20 102.8 146 48.6
GSVIVG01013867001 Vitis vinifera HOM05D003010 ORTHO05D003623 3.0e-20 102.4 148 46.6
TAR636G0256 Trochodendron aralioides HOM05D003010 ORTHO05D003623 6.7e-20 101.3 121 48.8
MELO3C017634.2 Cucumis melo HOM05D003010 ORTHO05D003623 8.8e-20 100.9 115 48.7
Lj1A974G32 Lonicera japonica HOM05D003010 ORTHO05D003623 8.8e-20 100.9 155 43.2
Actinidia31768 Actinidia chinensis HOM05D003010 ORTHO05D003623 1.1e-19 100.5 136 48.5
Haze_22213 Corylus avellana HOM05D000255 ORTHO05D000935 1.1e-19 100.5 118 50.8
vmacro09926 Vaccinium macrocarpon HOM05D003010 ORTHO05D003623 1.1e-19 100.5 122 50.0
Sed0025535 Sechium edule HOM05D003010 ORTHO05D003623 2.0e-19 99.8 122 46.7
A09p07370 Brassica napus HOM05D003010 ORTHO05D003623 2.6e-19 99.4 63 81.0
BraA09t36392Z Brassica rapa HOM05D003010 ORTHO05D003623 2.6e-19 99.4 63 81.0
CANSAT56G3417 Cannabis sativa HOM05D003010 ORTHO05D003623 5.7e-19 98.2 122 46.7
FAN10G3636 Fragaria x ananassa HOM05D003010 ORTHO05D003623 5.7e-19 98.2 102 56.9
Manes.14G039600 Manihot esculenta HOM05D003010 ORTHO05D003623 9.7e-19 97.4 125 48.8
TAR629G3508 Trochodendron aralioides HOM05D003010 ORTHO05D003623 9.7e-19 97.4 123 48.0
Nitab4.5_0002236g0070 Nicotiana tabacum HOM05D003010 ORTHO05D003623 2.2e-18 96.3 151 41.1
Ca_10413_v3 Cicer arietinum L. HOM05D003010 ORTHO05D000523 2.8e-18 95.9 122 42.6
Peaxi162Scf00167g01022 Petunia axillaris HOM05D003010 ORTHO05D003623 3.7e-18 95.5 153 39.2
CsaV3_4G004320 Cucumis sativus L. HOM05D003010 ORTHO05D003623 8.2e-18 94.4 139 42.4
Nitab4.5_0002211g0010 Nicotiana tabacum HOM05D003010 ORTHO05D003623 1.4e-17 93.6 151 40.4
DCAR_020169 Daucus carota HOM05D003010 ORTHO05D003623 2.4e-17 92.8 90 57.8
Nn6g33810 Nelumbo nucifera HOM05D003010 ORTHO05D003623 5.3e-17 91.7 147 41.5
SalBow3G0012 Salvia bowleyana HOM05D003010 ORTHO05D003623 5.3e-17 91.7 144 40.3
SalBow3G1605 Salvia bowleyana HOM05D003010 ORTHO05D003623 5.3e-17 91.7 144 40.3
SGA_v2.0_scaffold60G20833 Striga asiatica HOM05D003010 ORTHO05D003623 7.0e-17 91.3 117 47.0
Solyc05g052080.1 Solanum lycopersicum HOM05D003010 ORTHO05D003623 1.3e-15 87.0 125 44.8
Migut.F00533 Erythranthe guttata HOM05D003010 ORTHO05D003623 8.5e-15 84.3 117 42.7
Manes.06G130601 Manihot esculenta HOM05D003010 ORTHO05D003623 8.5e-15 84.3 81 56.8
PSO782G2859 Papaver somniferum HOM05D003010 ORTHO05D003623 1.9e-14 83.2 137 39.4
Sopen05g030630 Solanum pennellii HOM05D003010 ORTHO05D003623 9.4e-14 80.9 62 61.3
VMungo0720G1826 Vigna mungo HOM05D002495 ORTHO05D003623 2.7e-13 79.3 155 35.5
Aqoxy3G02705 Aquilegia oxysepala HOM05D003010 ORTHO05D003623 3.6e-13 79.0 78 51.3
Actinidia25899 Actinidia chinensis HOM05D003010 ORTHO05D003623 5.2e-12 75.1 110 40.9
Ciclev10007152m.g Citrus clementina HOM05D003010 ORTHO05D003623 1.2e-11 73.9 84 48.8
HPP92_023172 Vanilla planifolia HOM05D003010 ORTHO05D003623 2.0e-11 73.2 107 39.3
Dinv16875 Davidia involucrata HOM05D003010 ORTHO05D003623 5.7e-11 71.6 99 43.4
GSVIVG01007344001 Vitis vinifera HOM05D003010 ORTHO05D003623 5.7e-11 71.6 132 38.6
vmacro00038 Vaccinium macrocarpon HOM05D003010 ORTHO05D003623 7.5e-11 71.2 136 35.3
MBI04_g29855_MAGBIO Magnolia biondii HOM05D005914 ORTHO05D007361 1.7e-10 70.1 101 37.6
TPR.G13393 Trifolium pratense HOM05D003010 ORTHO05D003623 3.7e-10 68.9 95 43.2
Lj8C48T14 Lonicera japonica HOM05D003010 ORTHO05D003623 4.8e-10 68.6 87 43.7
Migut.F01206 Erythranthe guttata HOM05D003010 ORTHO05D003623 6.3e-10 68.2 83 49.4
HanXRQChr14g0461131 Helianthus annuus HOM05D003010 ORTHO05D003623 8.2e-10 67.8 111 35.1
Gorai.004G194100 Gossypium raimondii HOM05D003010 ORTHO05D003623 1.4e-09 67.0 88 43.2
Nn1g00825 Nelumbo nucifera HOM05D003010 ORTHO05D003623 2.4e-09 66.2 90 43.3
PSO063G3783 Papaver somniferum HOM05D003010 ORTHO05D003623 3.1e-09 65.9 101 41.6
Gohir.A08G165900 Gossypium hirsutum HOM05D003010 ORTHO05D003623 7.0e-09 64.7 88 40.9
ECA238G2786 Erigeron canadensis HOM05D003010 ORTHO05D003623 9.1e-09 64.3 117 35.9
Gohir.D08G184800 Gossypium hirsutum HOM05D003010 ORTHO05D003623 9.1e-09 64.3 90 43.3
Rhsim04G0160200 Rhododendron simsii HOM05D003010 ORTHO05D003623 9.1e-09 64.3 82 39.0
Cc08_g11590 Coffea canephora HOM05D003010 ORTHO05D003623 1.2e-08 63.9 77 44.2
Nitab4.5_0009955g0020 Nicotiana tabacum HOM05D003010 ORTHO05D003623 1.2e-08 63.9 111 35.1
Hund14501 Selenicereus undatus HOM05D003010 ORTHO05D003623 1.2e-08 63.9 110 35.5
Solyc08g078060.3 Solanum lycopersicum HOM05D003010 ORTHO05D003623 1.2e-08 63.9 116 37.9
Nitab4.5_0000500g0010 Nicotiana tabacum HOM05D003010 ORTHO05D003623 2.0e-08 63.2 111 36.0
Sc01g0008150 Simmondsia chinensis HOM05D003010 ORTHO05D003623 2.0e-08 63.2 122 37.7
CAN.G761.23 Capsicum annuum HOM05D003010 ORTHO05D003623 2.7e-08 62.8 100 39.0
PGSC0003DMG400026255 Solanum tuberosum HOM05D003010 ORTHO05D003623 2.7e-08 62.8 113 38.1
EL10Ac5g12296 Beta vulgaris HOM05D003010 ORTHO05D003623 4.5e-08 62.0 103 42.7
Sopen08g026560 Solanum pennellii HOM05D003010 ORTHO05D003623 4.5e-08 62.0 116 37.1
Duzib205G1418 Durio zibethinus HOM05D003010 ORTHO05D003623 5.9e-08 61.6 88 40.9
CDE01G0248 Ceratophyllum demersum HOM05D003010 ORTHO05D003623 7.7e-08 61.2 115 33.0
Nn8g39368 Nelumbo nucifera HOM05D003010 ORTHO05D010439 7.7e-08 61.2 120 36.7
Peaxi162Scf00446g00412 Petunia axillaris HOM05D003010 ORTHO05D003623 7.7e-08 61.2 111 33.3
Hma1.2p1_1014F.1_g248010 Hydrangea macrophylla HOM05D003010 ORTHO05D003623 1.3e-07 60.5 92 39.1
Hma1.2p1_1305F.1_g274559 Hydrangea macrophylla HOM05D003010 ORTHO05D003623 1.3e-07 60.5 92 39.1
Ah.12g054120 Amaranthus hybridus HOM05D003010 ORTHO05D003623 1.7e-07 60.1 152 34.2
COL.COLO4_21678 Corchorus olitorius HOM05D003010 ORTHO05D003623 1.7e-07 60.1 87 37.9
PSO801G0586 Papaver somniferum HOM05D003010 ORTHO05D003623 2.2e-07 59.7 110 37.3
Hund11331 Selenicereus undatus HOM05D003010 ORTHO05D003623 2.2e-07 59.7 82 40.2
Actinidia02185 Actinidia chinensis HOM05D003010 ORTHO05D003623 3.8e-07 58.9 86 38.4
Sc07g0009120 Simmondsia chinensis HOM05D003010 ORTHO05D003623 3.8e-07 58.9 83 43.4
Cfa003337 Carpinus fangiana HOM05D003010 ORTHO05D010439 5.0e-07 58.5 94 37.2
Thecc.03G243800 Theobroma cacao HOM05D003010 ORTHO05D003623 5.0e-07 58.5 87 40.2
Migut.A01045 Erythranthe guttata HOM05D003010 ORTHO05D003623 6.5e-07 58.2 98 34.7
PSO339G5114 Papaver somniferum HOM05D003010 ORTHO05D010439 8.5e-07 57.8 136 33.1
Lsat_1_v5_gn_2_127061 Lactuca sativa HOM05D003010 ORTHO05D003623 1.1e-06 57.4 90 42.2
Dinv21689 Davidia involucrata HOM05D003010 ORTHO05D003623 1.5e-06 57.0 86 37.2
Prupe.5G059800 Prunus persica HOM05D003010 ORTHO05D003623 1.5e-06 57.0 88 37.5
Manes.01G086500 Manihot esculenta HOM05D003010 ORTHO05D003623 2.5e-06 56.2 52 48.1
Dinv28854 Davidia involucrata HOM05D003010 ORTHO05D003623 4.2e-06 55.5 86 37.2
Manes.02G043601 Manihot esculenta HOM05D003010 ORTHO05D003623 4.2e-06 55.5 52 48.1
TWI81G0439 Tripterygium wilfordii HOM05D003010 ORTHO05D003623 4.2e-06 55.5 83 36.1
Haze_07981 Corylus avellana HOM05D003010 ORTHO05D003623 5.5e-06 55.1 84 40.5
TAR625G0712 Trochodendron aralioides HOM05D003010 ORTHO05D010439 7.2e-06 54.7 122 36.9
Oeu017218.3 Olea europaea HOM05D003010 ORTHO05D003623 9.4e-06 54.3 82 37.8
Potri.003G081900 Populus trichocarpa HOM05D003010 ORTHO05D003623 9.4e-06 54.3 51 52.9
Sabra03G0052800 Salix brachista HOM05D003010 ORTHO05D003623 9.4e-06 54.3 51 52.9


User provided reference genes

Program Settings