Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
BcaC03g18062 Brassica carinata HOM05D000108 ORTHO05D001407 6.9e-177 624.0 348 100.0
A02p41300 Brassica napus HOM05D000108 ORTHO05D001407 2.1e-125 453.0 353 76.2
C02p61270 Brassica napus HOM05D000108 ORTHO05D001407 8.0e-125 451.1 350 74.9
BcaC03g18065 Brassica carinata HOM05D000108 ORTHO05D001407 1.5e-123 446.8 350 74.6
BolC2t12173H Brassica oleracea HOM05D000108 ORTHO05D001407 5.7e-123 444.9 363 72.2
BraA02t09076Z Brassica rapa HOM05D000108 ORTHO05D001407 3.1e-121 439.1 364 72.3
BcaB07g29879 Brassica carinata HOM05D000108 ORTHO05D019684 4.2e-118 428.7 357 72.5
C07p44710 Brassica napus HOM05D000108 ORTHO05D001407 5.2e-92 342.0 357 62.5
A03p46640 Brassica napus HOM05D000108 ORTHO05D001407 1.1e-86 324.3 358 57.8
AL8G37550 Arabidopsis lyrata HOM05D000108 ORTHO05D001407 2.8e-85 319.7 380 55.5
Sp2g24240 Schrenkiella parvula HOM05D000108 ORTHO05D001407 4.0e-84 315.8 388 54.1
BolC7t44994H Brassica oleracea HOM05D000108 ORTHO05D001407 3.4e-83 312.8 328 61.9
BcaC06g33206 Brassica carinata HOM05D000108 ORTHO05D001407 3.9e-79 299.3 357 55.5
BraA03t13788Z Brassica rapa HOM05D000108 ORTHO05D001407 1.1e-78 297.7 329 57.1
AT5G60930 Arabidopsis thaliana HOM05D000108 ORTHO05D001407 9.6e-78 294.7 385 51.9
Carub.0008s2162 Capsella rubella HOM05D000108 ORTHO05D001407 1.7e-74 283.9 384 51.6
Aa31LG11G2370 Aethionema arabicum HOM05D000108 ORTHO05D001407 1.9e-73 280.4 374 52.9
CARHR274610 Cardamine hirsuta HOM05D000108 ORTHO05D001407 3.8e-66 256.1 397 50.1
Thhalv10003526m.g Eutrema salsugineum HOM05D000108 ORTHO05D001407 6.9e-60 235.3 361 49.6
THA.LOC104799089 Tarenaya hassleriana HOM05D000108 ORTHO05D001407 9.3e-57 224.9 377 46.9
Carub.0004s0906 Capsella rubella HOM05D000108 ORTHO05D001407 4.6e-48 196.1 186 60.8
Cpa.g.sc21.19 Carica papaya HOM05D000108 ORTHO05D001407 8.7e-39 165.2 372 42.5
Manes.18G058800 Manihot esculenta HOM05D000108 ORTHO05D001407 9.0e-36 155.2 399 36.8
Potri.005G150800 Populus trichocarpa HOM05D000108 ORTHO05D001407 1.3e-34 151.4 368 37.5
Thecc.08G070900 Theobroma cacao HOM05D000108 ORTHO05D001407 1.3e-34 151.4 375 37.9
Sabra02G0083300 Salix brachista HOM05D000108 ORTHO05D001407 5.0e-34 149.4 387 36.7
ClCG11G014560 Citrullus lanatus HOM05D000108 ORTHO05D001407 2.5e-33 147.1 367 36.8
COL.COLO4_35247 Corchorus olitorius HOM05D000108 ORTHO05D001407 2.5e-33 147.1 376 37.2
Eucgr.F00421 Eucalyptus grandis HOM05D000108 ORTHO05D001407 2.5e-33 147.1 379 36.9
TWI36G0449 Tripterygium wilfordii HOM05D000108 ORTHO05D001407 2.1e-32 144.1 370 38.4
Ciclev10000037m.g Citrus clementina HOM05D000108 ORTHO05D001407 2.7e-32 143.7 372 36.6
Sed0004579 Sechium edule HOM05D000108 ORTHO05D001407 2.7e-32 143.7 345 35.7
CANSAT25G3236 Cannabis sativa HOM05D000108 ORTHO05D001407 8.8e-31 138.7 369 35.8
Sed0014402 Sechium edule HOM05D000108 ORTHO05D001407 2.0e-30 137.5 374 34.8
Duzib093G0656 Durio zibethinus HOM05D000108 ORTHO05D001407 3.3e-30 136.7 374 37.7
Gorai.009G229400 Gossypium raimondii HOM05D000108 ORTHO05D001407 4.4e-30 136.3 377 35.0
Gohir.A05G219500 Gossypium hirsutum HOM05D000108 ORTHO05D001407 9.7e-30 135.2 376 35.9
Potri.002G106000 Populus trichocarpa HOM05D000108 ORTHO05D001407 9.7e-30 135.2 316 38.3
TWI12G0680 Tripterygium wilfordii HOM05D000108 ORTHO05D001407 9.7e-30 135.2 369 35.2
Duzib116G0269 Durio zibethinus HOM05D000108 ORTHO05D001407 1.3e-29 134.8 373 37.0
Cfa013795 Carpinus fangiana HOM05D000108 ORTHO05D001407 1.7e-29 134.4 374 36.9
MELO3C003524.2 Cucumis melo HOM05D000108 ORTHO05D001407 2.8e-29 133.7 359 34.5
Haze_22458 Corylus avellana HOM05D000108 ORTHO05D001407 4.8e-29 132.9 371 35.3
Gohir.D05G222000 Gossypium hirsutum HOM05D000108 ORTHO05D001407 4.8e-29 132.9 377 34.7
Atru.chr13.1012 Acer truncatum HOM05D000108 ORTHO05D001407 3.1e-28 130.2 371 39.9
CsaV3_3G047980 Cucumis sativus L. HOM05D000108 ORTHO05D001407 5.9e-27 125.9 366 34.2
QL09p017790 Quercus lobata HOM05D000108 ORTHO05D001407 5.9e-27 125.9 345 36.8
CANSAT25G0259 Cannabis sativa HOM05D000108 ORTHO05D001407 7.7e-27 125.6 372 36.6
CiPaw.07G165600 Carya illinoinensis HOM05D000108 ORTHO05D001407 7.7e-27 125.6 377 33.4
vmacro21339 Vaccinium macrocarpon HOM05D000108 ORTHO05D001407 2.2e-26 124.0 304 38.2
Actinidia10275 Actinidia chinensis HOM05D000108 ORTHO05D001407 5.0e-26 122.9 369 35.5
Aqoxy6G00873 Aquilegia oxysepala HOM05D000108 ORTHO05D001407 8.5e-26 122.1 368 33.4
CSS0046831 Camellia sinensis var. sinensis HOM05D000108 ORTHO05D001407 1.9e-25 120.9 380 34.7
Rhsim06G0071700 Rhododendron simsii HOM05D000108 ORTHO05D001407 2.5e-25 120.6 308 37.7
GSVIVG01009178001 Vitis vinifera HOM05D000108 ORTHO05D001407 9.4e-25 118.6 362 34.0
Cc10_g15880 Coffea canephora HOM05D000108 ORTHO05D001407 1.6e-24 117.9 391 33.8
Dinv44861 Davidia involucrata HOM05D000108 ORTHO05D001407 1.6e-24 117.9 215 44.2
FAN08G2169 Fragaria x ananassa HOM05D000108 ORTHO05D001407 2.7e-24 117.1 364 35.2
AUR62019089 Chenopodium quinoa HOM05D000108 ORTHO05D001407 4.7e-24 116.3 377 33.7
AUR62014346 Chenopodium quinoa HOM05D000108 ORTHO05D001407 1.0e-23 115.2 375 33.3
FvH4_5g35340 Fragaria vesca HOM05D000108 ORTHO05D001407 1.0e-23 115.2 364 33.8
FAN04G1245 Fragaria x ananassa HOM05D000108 ORTHO05D001407 1.0e-23 115.2 366 33.6
FAN18G4137 Fragaria x ananassa HOM05D000108 ORTHO05D001407 1.0e-23 115.2 364 34.9
TAR625G0090 Trochodendron aralioides HOM05D000108 ORTHO05D001407 1.0e-23 115.2 365 34.2
Ah.05g171180 Amaranthus hybridus HOM05D000108 ORTHO05D001407 1.4e-23 114.8 373 33.0
Hund26815 Selenicereus undatus HOM05D000108 ORTHO05D001407 1.4e-23 114.8 383 33.9
FAN13G1922 Fragaria x ananassa HOM05D000108 ORTHO05D001407 5.2e-23 112.8 364 34.9
Oeu061173.1 Olea europaea HOM05D000108 ORTHO05D001407 5.2e-23 112.8 362 34.5
Dinv42613 Davidia involucrata HOM05D000108 ORTHO05D001407 4.4e-22 109.8 374 33.2
Prupe.1G532000 Prunus persica HOM05D000108 ORTHO05D001407 4.4e-22 109.8 372 34.4
RcHm_v2.0_Chr7g0236691 Rosa chinensis HOM05D000108 ORTHO05D001407 9.7e-22 108.6 377 32.4
Ca_23442_v3 Cicer arietinum L. HOM05D000108 ORTHO05D001407 3.7e-21 106.7 395 30.4
DCAR_019314 Daucus carota HOM05D000108 ORTHO05D001407 3.7e-21 106.7 360 32.5
VMungo0647G1798 Vigna mungo HOM05D000108 ORTHO05D001407 1.4e-20 104.8 303 33.0
Actinidia19242 Actinidia chinensis HOM05D000108 ORTHO05D001407 3.1e-20 103.6 370 33.0
Nn5g29882 Nelumbo nucifera HOM05D000108 ORTHO05D001407 7.0e-20 102.4 375 32.3
CAN.G475.30 Capsicum annuum HOM05D000108 ORTHO05D001407 3.5e-19 100.1 242 35.5
Hund17282 Selenicereus undatus HOM05D000108 ORTHO05D001407 5.9e-19 99.4 366 31.7
DCAR_012856 Daucus carota HOM05D000108 ORTHO05D001407 1.0e-18 98.6 389 32.1
MBI16_g12464_MAGBIO Magnolia biondii HOM05D000108 ORTHO05D001407 1.0e-18 98.6 236 36.0
Nitab4.5_0000131g0280 Nicotiana tabacum HOM05D000108 ORTHO05D001407 1.3e-18 98.2 194 36.6
Sopen04g030110 Solanum pennellii HOM05D000108 ORTHO05D001407 1.3e-18 98.2 329 31.3
Phvul.008G181800 Phaseolus vulgaris HOM05D000108 ORTHO05D001407 1.7e-18 97.8 315 30.8
MD08G1198000 Malus domestica HOM05D000108 ORTHO05D001407 2.9e-18 97.1 369 32.0
Ca_05438_v3 Cicer arietinum L. HOM05D000108 ORTHO05D001407 1.1e-17 95.1 299 31.4
MD15G1385300 Malus domestica HOM05D000108 ORTHO05D001407 1.1e-17 95.1 370 31.6
Oeu039158.1 Olea europaea HOM05D000108 ORTHO05D010239 1.5e-17 94.7 288 35.1
MSTRG.24429 Avicennia marina HOM05D000108 ORTHO05D001407 2.5e-17 94.0 370 32.4
PGSC0003DMG400009361 Solanum tuberosum HOM05D000108 ORTHO05D001407 3.2e-17 93.6 247 34.0
PSO675G4151 Papaver somniferum HOM05D000108 ORTHO05D001407 2.1e-16 90.9 368 31.8
EL10Ac1g00999 Beta vulgaris HOM05D000108 ORTHO05D001407 3.6e-16 90.1 384 32.8
Prupe.1G532100 Prunus persica HOM05D000108 ORTHO05D010239 3.6e-16 90.1 200 36.5
Lj1g0007620 Lotus japonicus HOM05D000108 ORTHO05D001407 8.0e-16 89.0 308 30.5
Glyma.14G181800 Glycine max HOM05D000108 ORTHO05D001407 1.4e-15 88.2 375 29.9
Sc12g0006640 Simmondsia chinensis HOM05D000108 ORTHO05D001407 1.8e-15 87.8 205 38.0
Lsat_1_v5_gn_6_104981 Lactuca sativa HOM05D000108 ORTHO05D001407 4.0e-15 86.7 398 30.7
Lalb_Chr17g0344541 Lupinus albus HOM05D000108 ORTHO05D001407 8.8e-15 85.5 383 30.5
Psat5g048800 Pisum sativum HOM05D000108 ORTHO05D001407 8.8e-15 85.5 404 28.0
Migut.N02859 Erythranthe guttata HOM05D000108 ORTHO05D001407 1.2e-14 85.1 353 30.0
Glyma.02G214300 Glycine max HOM05D000108 ORTHO05D001407 1.2e-14 85.1 352 28.7
Nitab4.5_0010888g0010 Nicotiana tabacum HOM05D000108 ORTHO05D001407 1.5e-14 84.7 236 34.7
Peaxi162Scf00454g00515 Petunia axillaris HOM05D000108 ORTHO05D010239 2.0e-14 84.3 113 42.5
Medtr3g100270 Medicago truncatula HOM05D000108 ORTHO05D001407 2.6e-14 84.0 261 31.8
TWI56G1192 Tripterygium wilfordii HOM05D000108 ORTHO05D010239 2.6e-14 84.0 132 41.7
Gorai.010G034800 Gossypium raimondii HOM05D000108 ORTHO05D001407 3.3e-14 83.6 359 32.3
Glyma.06G096200 Glycine max HOM05D000108 ORTHO05D001407 4.4e-14 83.2 206 34.0
MD08G1198100 Malus domestica HOM05D000108 ORTHO05D010239 4.4e-14 83.2 140 40.7
TPR.G34715 Trifolium pratense HOM05D000108 ORTHO05D001407 4.4e-14 83.2 265 33.2
TPR.G6308 Trifolium pratense HOM05D000108 ORTHO05D001407 4.4e-14 83.2 327 27.8
Gohir.A06G032400 Gossypium hirsutum HOM05D000108 ORTHO05D001407 5.7e-14 82.8 341 32.0
Gohir.D06G031600 Gossypium hirsutum HOM05D000108 ORTHO05D001407 9.7e-14 82.0 338 32.0
Phvul.002G296500 Phaseolus vulgaris HOM05D000108 ORTHO05D001407 1.7e-13 81.3 258 32.9
Haze_22459 Corylus avellana HOM05D000108 ORTHO05D010239 3.7e-13 80.1 145 38.6
FAN13G2627 Fragaria x ananassa HOM05D000108 ORTHO05D010239 4.8e-13 79.7 168 38.1
MD15G1385400 Malus domestica HOM05D000108 ORTHO05D010239 6.3e-13 79.3 140 39.3
SGA_v2.0_scaffold48G17831 Striga asiatica HOM05D000108 ORTHO05D001407 6.3e-13 79.3 327 31.5
Lalb_Chr08g0242511 Lupinus albus HOM05D000108 ORTHO05D001407 1.8e-12 77.8 413 26.9
unitig_744.g24110 Utricularia gibba HOM05D000108 ORTHO05D001407 1.8e-12 77.8 352 31.2
ATR0767G045 Amborella trichopoda HOM05D000108 ORTHO05D001407 2.4e-12 77.4 299 33.1
Lalb_Chr04g0252841 Lupinus albus HOM05D000108 ORTHO05D001407 2.4e-12 77.4 313 32.3
Os02g0742800 Oryza sativa ssp. japonica HOM05D000108 ORTHO05D001407 2.4e-12 77.4 378 28.3
Actinidia33570 Actinidia chinensis HOM05D000108 ORTHO05D030886 9.1e-12 75.5 186 39.2
arahy.Tifrunner.gnm1.ann1.X6V3MP Arachis hypogaea HOM05D000108 ORTHO05D001407 9.1e-12 75.5 302 29.8
FvH4_5g35240 Fragaria vesca HOM05D000108 ORTHO05D010239 9.1e-12 75.5 142 40.8
FAN08G2432 Fragaria x ananassa HOM05D000108 ORTHO05D010239 1.2e-11 75.1 142 40.8
FAN18G4321 Fragaria x ananassa HOM05D000108 ORTHO05D010239 1.2e-11 75.1 142 40.8
RcHm_v2.0_Chr6g0258621 Rosa chinensis HOM05D000108 ORTHO05D010239 1.2e-11 75.1 143 39.2
RcHm_v2.0_Chr7g0236371 Rosa chinensis HOM05D000108 ORTHO05D010239 1.2e-11 75.1 152 39.5
Lj4C737G6 Lonicera japonica HOM05D000076 ORTHO05D003143 4.5e-11 73.2 386 31.3
Psat2g065520 Pisum sativum HOM05D000108 ORTHO05D001407 4.5e-11 73.2 263 31.2
arahy.Tifrunner.gnm1.ann1.CYPG82 Arachis hypogaea HOM05D000108 ORTHO05D010239 5.9e-11 72.8 286 29.7
Lj1g0020667 Lotus japonicus HOM05D000108 ORTHO05D010239 5.9e-11 72.8 141 37.6
CANSAT25G3032 Cannabis sativa HOM05D000108 ORTHO05D010239 7.7e-11 72.4 157 34.4
arahy.Tifrunner.gnm1.ann1.IE7ZNS Arachis hypogaea HOM05D000108 ORTHO05D001407 1.3e-10 71.6 297 29.3
Ca_23441_v3 Cicer arietinum L. HOM05D000108 ORTHO05D010239 1.3e-10 71.6 269 27.1
VMungo1080G0967 Vigna mungo HOM05D000108 ORTHO05D001407 1.7e-10 71.2 328 29.3
Manes.18G058700 Manihot esculenta HOM05D000108 ORTHO05D010239 2.9e-10 70.5 169 36.1
CDE01G0713 Ceratophyllum demersum HOM05D000108 ORTHO05D001407 3.8e-10 70.1 262 29.4
TAR381G1095 Trochodendron aralioides HOM05D000108 ORTHO05D001407 5.0e-10 69.7 375 29.1
Nn1g05573 Nelumbo nucifera HOM05D000108 ORTHO05D001407 6.5e-10 69.3 380 27.4
Ciclev10001077m.g Citrus clementina HOM05D000108 ORTHO05D010239 1.9e-09 67.8 126 36.5
arahy.Tifrunner.gnm1.ann1.8QVC7G Arachis hypogaea HOM05D000108 ORTHO05D010239 2.5e-09 67.4 286 29.0
CiPaw.07G165500 Carya illinoinensis HOM05D000108 ORTHO05D010239 3.2e-09 67.0 232 33.6
Medtr3g100230 Medicago truncatula HOM05D000108 ORTHO05D010239 3.2e-09 67.0 259 27.4
Sabra02G0083400 Salix brachista HOM05D000108 ORTHO05D010239 4.2e-09 66.6 197 32.5
PSO541G4558 Papaver somniferum HOM05D000108 ORTHO05D001407 7.2e-09 65.9 377 29.7
QL09p017810 Quercus lobata HOM05D000108 ORTHO05D010239 7.2e-09 65.9 198 30.3
TPR.G6375 Trifolium pratense HOM05D000108 ORTHO05D010239 3.6e-08 63.5 139 36.0
Glyma.04G094400 Glycine max HOM05D000108 ORTHO05D001407 4.7e-08 63.2 265 29.1
Lj4C718T3 Lonicera japonica HOM05D000108 ORTHO05D001407 4.7e-08 63.2 198 36.4
Medtr5g066320 Medicago truncatula HOM05D000108 ORTHO05D001407 4.7e-08 63.2 254 31.5
Potri.002G106100 Populus trichocarpa HOM05D000108 ORTHO05D010239 4.7e-08 63.2 194 29.4
GSVIVG01009180001 Vitis vinifera HOM05D000108 ORTHO05D010239 4.7e-08 63.2 236 29.7
Duzib093G0215 Durio zibethinus HOM05D000108 ORTHO05D010239 3.0e-07 60.5 141 34.8
Duzib041G0116 Durio zibethinus HOM05D000108 ORTHO05D010239 4.0e-07 60.1 130 34.6
Eucgr.F02150 Eucalyptus grandis HOM05D000108 ORTHO05D010239 4.0e-07 60.1 174 33.9
Cfa013796 Carpinus fangiana HOM05D000108 ORTHO05D010239 6.8e-07 59.3 229 27.9
Gohir.A06G032300 Gossypium hirsutum HOM05D000108 ORTHO05D010239 6.8e-07 59.3 108 36.1
Gohir.D06G031500 Gossypium hirsutum HOM05D000108 ORTHO05D010239 6.8e-07 59.3 108 37.0
Lalb_Chr08g0242521 Lupinus albus HOM05D000108 ORTHO05D010239 6.8e-07 59.3 273 27.5
PGR031G1243 Punica granatum HOM05D000108 ORTHO05D010239 6.8e-07 59.3 47 55.3
unitig_21.g20613 Utricularia gibba HOM05D000108 ORTHO05D001407 8.8e-07 58.9 352 27.0
Gorai.010G034700 Gossypium raimondii HOM05D000108 ORTHO05D010239 1.2e-06 58.5 108 37.0
Psat5g048840 Pisum sativum HOM05D000108 ORTHO05D010239 1.2e-06 58.5 249 25.7
PGR031G0065 Punica granatum HOM05D000108 ORTHO05D001407 1.2e-06 58.5 181 33.7
Glyma.06G096600 Glycine max HOM05D000108 ORTHO05D010239 2.6e-06 57.4 294 27.6
AL7G43760 Arabidopsis lyrata HOM05D000108 ORTHO05D010239 3.4e-06 57.0 56 50.0
Zm00001eb254320 Zea mays HOM05D000108 ORTHO05D001407 3.4e-06 57.0 343 28.9
HanXRQChr05g0163351 Helianthus annuus HOM05D000108 ORTHO05D001407 4.4e-06 56.6 408 27.0
Atru.chr13.1010 Acer truncatum HOM05D000108 ORTHO05D010239 7.5e-06 55.8 41 61.0
arahy.Tifrunner.gnm1.ann1.2IJU75 Arachis hypogaea HOM05D000108 ORTHO05D001407 9.8e-06 55.5 322 26.4


User provided reference genes

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