Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
BcaC03g17967 Brassica carinata HOM05D003457 ORTHO05D009249 1.1e-130 470.3 298 100.0
C02p60250 Brassica napus HOM05D003457 ORTHO05D009249 2.8e-110 402.5 270 98.1
BolC2t12082H Brassica oleracea HOM05D003457 ORTHO05D009249 5.3e-109 398.3 269 97.8
BcaB07g29912 Brassica carinata HOM05D003457 ORTHO05D009249 3.4e-108 395.6 302 89.1
A02p40300 Brassica napus HOM05D003457 ORTHO05D009249 2.4e-106 389.4 273 94.9
BraA02t08999Z Brassica rapa HOM05D003457 ORTHO05D009249 1.6e-105 386.7 272 95.2
Sp2g22840 Schrenkiella parvula HOM05D003457 ORTHO05D009249 6.7e-88 328.2 336 61.6
AL6G36090 Arabidopsis lyrata HOM05D003457 ORTHO05D009249 1.3e-83 313.9 340 59.1
Thhalv10005511m.g Eutrema salsugineum HOM05D003457 ORTHO05D009249 3.2e-82 309.3 327 61.8
AT5G24500 Arabidopsis thaliana HOM05D003457 ORTHO05D009249 7.2e-74 281.6 337 55.5
Carub.0006s2232 Capsella rubella HOM05D003457 ORTHO05D009249 1.8e-72 276.9 345 55.7
CARHR188920 Cardamine hirsuta HOM05D003457 ORTHO05D009249 6.7e-72 275.0 345 56.5
Aa31LG11G3740 Aethionema arabicum HOM05D003457 ORTHO05D009249 5.3e-69 265.4 328 54.3
THA.LOC104798986 Tarenaya hassleriana HOM05D003457 ORTHO05D009249 4.1e-53 212.6 292 47.3
Cpa.g.sc3.155 Carica papaya HOM05D003457 ORTHO05D009249 1.6e-25 120.9 303 34.3
Duzib084G1096 Durio zibethinus HOM05D003457 ORTHO05D009249 2.4e-21 107.1 232 43.1
Duzib205G0475 Durio zibethinus HOM05D003457 ORTHO05D009249 5.4e-21 105.9 228 44.7
Thecc.03G208400 Theobroma cacao HOM05D003457 ORTHO05D009249 5.4e-21 105.9 233 37.8
Gohir.D04G000080 Gossypium hirsutum HOM05D003457 ORTHO05D009249 1.6e-20 104.4 306 35.9
Gohir.D04G000050 Gossypium hirsutum HOM05D003457 ORTHO05D009249 4.6e-20 102.8 303 35.0
Duzib068G0780 Durio zibethinus HOM05D003457 ORTHO05D009249 1.3e-19 101.3 329 35.3
FvH4_7g32890 Fragaria vesca HOM05D003457 ORTHO05D009249 1.7e-19 100.9 201 35.3
FAN03G1743 Fragaria x ananassa HOM05D003457 ORTHO05D009746 1.7e-19 100.9 201 35.8
FAN10G0211 Fragaria x ananassa HOM05D003457 ORTHO05D009746 1.7e-19 100.9 201 35.3
Gorai.012G000700 Gossypium raimondii HOM05D003457 ORTHO05D009249 1.7e-19 100.9 304 35.5
Cfa016162 Carpinus fangiana HOM05D003457 ORTHO05D009249 3.9e-19 99.8 288 33.7
MSTRG.31 Avicennia marina HOM05D003457 ORTHO05D009249 5.0e-19 99.4 302 30.8
Manes.01G043100 Manihot esculenta HOM05D003457 ORTHO05D009249 5.0e-19 99.4 272 36.0
SalBow2G2220 Salvia bowleyana HOM05D003457 ORTHO05D009249 5.0e-19 99.4 198 37.9
PGR142G1344 Punica granatum HOM05D003457 ORTHO05D009249 1.1e-18 98.2 257 36.2
FAN01G1561 Fragaria x ananassa HOM05D003457 ORTHO05D009746 2.5e-18 97.1 190 36.3
CSS0029860 Camellia sinensis var. sinensis HOM05D003457 ORTHO05D009249 4.3e-18 96.3 312 28.5
CSS0022238 Camellia sinensis var. sinensis HOM05D003457 ORTHO05D009249 5.6e-18 95.9 312 28.5
ClCG00G005020 Citrullus lanatus HOM05D003457 ORTHO05D009249 5.6e-18 95.9 229 31.9
ClCG01G004630 Citrullus lanatus HOM05D003457 ORTHO05D009249 5.6e-18 95.9 229 31.9
SGA_v2.0_scaffold141G35555 Striga asiatica HOM05D003457 ORTHO05D009249 9.5e-18 95.1 278 31.3
FAN10G3191 Fragaria x ananassa HOM05D003457 ORTHO05D009746 1.2e-17 94.7 201 44.3
RcHm_v2.0_Chr1g0382841 Rosa chinensis HOM05D003457 ORTHO05D009249 1.2e-17 94.7 214 44.4
TWI23G0841 Tripterygium wilfordii HOM05D003457 ORTHO05D009249 1.6e-17 94.4 321 32.7
Ciclev10020653m.g Citrus clementina HOM05D003457 ORTHO05D009249 2.1e-17 94.0 202 33.2
ClCG01G004590 Citrullus lanatus HOM05D003457 ORTHO05D009249 3.6e-17 93.2 325 28.6
Rhsim03G0215300 Rhododendron simsii HOM05D003457 ORTHO05D009249 1.1e-16 91.7 197 36.5
TPR.G33664 Trifolium pratense HOM05D003457 ORTHO05D009249 1.1e-16 91.7 189 35.4
Actinidia08697 Actinidia chinensis HOM05D003457 ORTHO05D009249 1.8e-16 90.9 231 39.4
ATR1155G002 Amborella trichopoda HOM05D003457 ORTHO05D009249 1.8e-16 90.9 209 33.5
CiPaw.06G041400 Carya illinoinensis HOM05D003457 ORTHO05D009249 2.3e-16 90.5 305 34.8
Cc02_g00840 Coffea canephora HOM05D003457 ORTHO05D009249 2.3e-16 90.5 218 33.9
Migut.F00990 Erythranthe guttata HOM05D003457 ORTHO05D009249 3.1e-16 90.1 297 30.0
MBI12_g09299_MAGBIO Magnolia biondii HOM05D003457 ORTHO05D009249 4.0e-16 89.7 285 30.9
Dinv29212 Davidia involucrata HOM05D003457 ORTHO05D009249 5.2e-16 89.4 243 33.3
Lj1g0002342 Lotus japonicus HOM05D003457 ORTHO05D009249 5.2e-16 89.4 207 47.8
MELO3C033815.2 Cucumis melo HOM05D003457 ORTHO05D009249 6.8e-16 89.0 234 31.6
CsaV3_5G004840 Cucumis sativus L. HOM05D003457 ORTHO05D009249 1.2e-15 88.2 234 31.6
DCAR_020371 Daucus carota HOM05D003457 ORTHO05D009249 1.2e-15 88.2 211 37.0
CAN.G303.15 Capsicum annuum HOM05D003457 ORTHO05D009249 1.5e-15 87.8 224 33.0
Actinidia34268 Actinidia chinensis HOM05D003457 ORTHO05D009249 2.0e-15 87.4 229 32.3
MD01G1228100 Malus domestica HOM05D003457 ORTHO05D009249 2.0e-15 87.4 244 31.6
Prupe.2G318600 Prunus persica HOM05D003457 ORTHO05D009249 5.8e-15 85.9 235 33.2
Medtr3g092670 Medicago truncatula HOM05D003457 ORTHO05D009249 9.8e-15 85.1 202 35.1
Dinv35380 Davidia involucrata HOM05D003457 ORTHO05D009746 1.3e-14 84.7 245 31.4
MD07G1298800 Malus domestica HOM05D003457 ORTHO05D009249 1.3e-14 84.7 235 33.2
Psat5g072040 Pisum sativum HOM05D003457 ORTHO05D009249 1.7e-14 84.3 196 35.7
Peaxi162Scf00300g00833 Petunia axillaris HOM05D003457 ORTHO05D009249 2.2e-14 84.0 303 29.7
Ca_16777_v3 Cicer arietinum L. HOM05D003457 ORTHO05D009249 3.7e-14 83.2 202 35.1
Aqoxy5G04336 Aquilegia oxysepala HOM05D003457 ORTHO05D009249 8.3e-14 82.0 211 34.1
Oeu037975.2 Olea europaea HOM05D003457 ORTHO05D009249 8.3e-14 82.0 216 31.9
Potri.015G005100 Populus trichocarpa HOM05D003457 ORTHO05D009249 8.3e-14 82.0 311 30.2
Sabra15G0003600 Salix brachista HOM05D003457 ORTHO05D009249 1.4e-13 81.3 262 34.0
Nn1g00443 Nelumbo nucifera HOM05D003457 ORTHO05D009249 1.9e-13 80.9 248 30.6
Eucgr.K00429 Eucalyptus grandis HOM05D003457 ORTHO05D009249 9.2e-13 78.6 326 30.4
Nitab4.5_0000319g0070 Nicotiana tabacum HOM05D003457 ORTHO05D009249 9.2e-13 78.6 216 33.3
AUR62035619 Chenopodium quinoa HOM05D003457 ORTHO05D009249 1.2e-12 78.2 225 32.9
Nitab4.5_0005040g0050 Nicotiana tabacum HOM05D003457 ORTHO05D009249 1.6e-12 77.8 215 33.0
AUR62006007 Chenopodium quinoa HOM05D003457 ORTHO05D009746 2.1e-12 77.4 222 30.2
Potri.012G021300 Populus trichocarpa HOM05D003457 ORTHO05D009249 3.5e-12 76.6 185 36.8
Lsat_1_v5_gn_9_3980 Lactuca sativa HOM05D003457 ORTHO05D009249 4.6e-12 76.3 258 28.7
Solyc03g081310.3 Solanum lycopersicum HOM05D003457 ORTHO05D009249 4.6e-12 76.3 249 29.3
Sopen03g022030 Solanum pennellii HOM05D003457 ORTHO05D009249 4.6e-12 76.3 249 29.7
TAR629G1045 Trochodendron aralioides HOM05D003457 ORTHO05D009249 4.6e-12 76.3 251 31.5
COL.COLO4_14368 Corchorus olitorius HOM05D003457 ORTHO05D009249 6.0e-12 75.9 46 69.6
Glyma.06G136400 Glycine max HOM05D003457 ORTHO05D009249 6.0e-12 75.9 200 42.5
Lsat_1_v5_gn_7_20360 Lactuca sativa HOM05D003457 ORTHO05D009249 6.0e-12 75.9 241 29.9
Phvul.009G045300 Phaseolus vulgaris HOM05D003457 ORTHO05D009249 6.0e-12 75.9 188 34.6
Lsat_1_v5_gn_5_51360 Lactuca sativa HOM05D003457 ORTHO05D009249 7.8e-12 75.5 258 28.7
Lsat_1_v5_gn_8_4361 Lactuca sativa HOM05D003457 ORTHO05D009249 7.8e-12 75.5 319 27.0
Sabra05G0139600 Salix brachista HOM05D003457 ORTHO05D009249 7.8e-12 75.5 143 39.2
Glyma.04G228600 Glycine max HOM05D003457 ORTHO05D009249 1.0e-11 75.1 194 35.1
CiPaw.02G048700 Carya illinoinensis HOM05D003457 ORTHO05D009249 1.7e-11 74.3 108 41.7
TAR636G2436 Trochodendron aralioides HOM05D003457 ORTHO05D009249 1.7e-11 74.3 244 32.0
QL09p007211 Quercus lobata HOM05D003457 ORTHO05D009249 1.1e-10 71.6 227 44.5
unitig_90.g27506 Utricularia gibba HOM05D003457 ORTHO05D009249 1.5e-10 71.2 154 34.4
VMungo1309G3135 Vigna mungo HOM05D003457 ORTHO05D009249 1.5e-10 71.2 187 32.6
PGSC0003DMG400000588 Solanum tuberosum HOM05D003457 ORTHO05D009249 1.9e-10 70.9 329 30.4
Atru.chr12.2426 Acer truncatum HOM05D003457 ORTHO05D009249 4.3e-10 69.7 143 38.5
Ah.07g204690 Amaranthus hybridus HOM05D003457 ORTHO05D009249 4.3e-10 69.7 255 30.2
Lsat_1_v5_gn_1_120581 Lactuca sativa HOM05D003457 ORTHO05D009249 4.3e-10 69.7 258 27.9
EL10Ac3g05182 Beta vulgaris HOM05D003457 ORTHO05D009249 5.6e-10 69.3 227 31.7
Sabra12G0012300 Salix brachista HOM05D003457 ORTHO05D009249 9.5e-10 68.6 162 34.6
CDE01G0392 Ceratophyllum demersum HOM05D003457 ORTHO05D009249 2.1e-09 67.4 205 32.2
Lalb_Chr08g0239631 Lupinus albus HOM05D003457 ORTHO05D009249 6.2e-09 65.9 210 36.7
PSO782G2427 Papaver somniferum HOM05D003457 ORTHO05D009249 8.1e-09 65.5 224 28.6
ECA233G0397 Erigeron canadensis HOM05D003457 ORTHO05D009249 2.0e-07 60.8 193 37.8
HanXRQChr08g0225921 Helianthus annuus HOM05D003457 ORTHO05D009249 3.4e-07 60.1 254 28.0
CDE02G1140 Ceratophyllum demersum HOM05D003457 ORTHO05D009249 5.8e-07 59.3 218 29.8
HPP92_015415 Vanilla planifolia HOM05D003457 ORTHO05D009249 1.3e-06 58.2 205 29.3


User provided reference genes

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