Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
BcaC03g17951 Brassica carinata HOM05D003381 ORTHO05D003880 6.9e-42 173.7 98 100.0
BolC2t12066H Brassica oleracea HOM05D003381 ORTHO05D003880 6.9e-42 173.7 98 100.0
C02p60110 Brassica napus HOM05D003381 ORTHO05D003880 1.5e-41 172.6 98 99.0
BraA02t08981Z Brassica rapa HOM05D003381 ORTHO05D003880 1.5e-41 172.6 98 99.0
Thhalv10005368m.g Eutrema salsugineum HOM05D003381 ORTHO05D003880 8.2e-35 150.2 100 88.0
Sp2g22730 Schrenkiella parvula HOM05D003381 ORTHO05D003880 8.2e-35 150.2 100 88.0
AT5G24660 Arabidopsis thaliana HOM05D003381 ORTHO05D003880 1.5e-33 146.0 93 88.2
A06p35480 Brassica napus HOM05D003381 ORTHO05D003880 1.5e-33 146.0 100 86.0
BraA06t26471Z Brassica rapa HOM05D003381 ORTHO05D003880 1.5e-33 146.0 100 86.0
CARHR188800 Cardamine hirsuta HOM05D003381 ORTHO05D003880 2.0e-33 145.6 93 88.2
Carub.0006s2252 Capsella rubella HOM05D003381 ORTHO05D003880 4.5e-33 144.4 92 88.0
BcaNung02004 Brassica carinata HOM05D003381 ORTHO05D003880 1.0e-32 143.3 100 84.0
C07p43060 Brassica napus HOM05D003381 ORTHO05D003880 1.0e-32 143.3 100 84.0
BolC7t44833H Brassica oleracea HOM05D003381 ORTHO05D003880 1.0e-32 143.3 100 84.0
AL6G36270 Arabidopsis lyrata HOM05D003381 ORTHO05D003880 5.0e-32 141.0 93 86.0
AT5G24655 Arabidopsis thaliana HOM05D003381 ORTHO05D003880 7.2e-31 137.1 91 83.5
Aa31LG11G3910 Aethionema arabicum HOM05D003381 ORTHO05D003880 1.2e-30 136.3 89 84.3
Carub.0006s2251 Capsella rubella HOM05D003381 ORTHO05D003880 1.2e-30 136.3 95 84.2
AL6G36260 Arabidopsis lyrata HOM05D003381 ORTHO05D003880 3.6e-30 134.8 91 83.5
AT3G49570 Arabidopsis thaliana HOM05D003381 ORTHO05D003880 5.7e-28 127.5 89 77.5
Sp5g12540 Schrenkiella parvula HOM05D003381 ORTHO05D003880 3.7e-27 124.8 91 75.8
AL5G29410 Arabidopsis lyrata HOM05D003381 ORTHO05D003880 4.8e-27 124.4 89 75.3
BolC8t50073H Brassica oleracea HOM05D003381 ORTHO05D003880 5.3e-26 120.9 89 76.4
Carub.0005s1590 Capsella rubella HOM05D003381 ORTHO05D003880 7.0e-26 120.6 90 73.3
BcaC07g39418 Brassica carinata HOM05D003381 ORTHO05D003880 2.6e-25 118.6 89 74.2
A06p18190 Brassica napus HOM05D003381 ORTHO05D003880 2.6e-25 118.6 89 74.2
BraA06t24903Z Brassica rapa HOM05D003381 ORTHO05D003880 2.6e-25 118.6 89 74.2
A02p40150 Brassica napus HOM05D003381 ORTHO05D003880 1.3e-24 116.3 66 97.0
CARHR158590 Cardamine hirsuta HOM05D003381 ORTHO05D003880 6.5e-24 114.0 91 69.2
Carub.0005s1591 Capsella rubella HOM05D003381 ORTHO05D003880 4.2e-23 111.3 91 68.1
Sp5g12530 Schrenkiella parvula HOM05D003381 ORTHO05D003880 4.2e-23 111.3 85 69.4
THA.LOC104798994 Tarenaya hassleriana HOM05D003381 ORTHO05D003880 4.2e-23 111.3 78 74.4
BcaC07g39419 Brassica carinata HOM05D003381 ORTHO05D003880 7.2e-23 110.5 91 68.1
Thhalv10010815m.g Eutrema salsugineum HOM05D003381 ORTHO05D003880 7.2e-23 110.5 85 72.9
C08p24550 Brassica napus HOM05D003381 ORTHO05D003880 6.1e-22 107.5 81 69.1
BolC8t50074H Brassica oleracea HOM05D003381 ORTHO05D003880 6.1e-22 107.5 81 69.1
BcaC07g39421 Brassica carinata HOM05D003381 ORTHO05D003880 8.0e-22 107.1 93 65.6
AL5G29420 Arabidopsis lyrata HOM05D003381 ORTHO05D003880 1.0e-21 106.7 91 64.8
CARHR158580 Cardamine hirsuta HOM05D003381 ORTHO05D003880 1.4e-21 106.3 89 67.4
BcaB01g00694 Brassica carinata HOM05D003381 ORTHO05D003880 4.0e-21 104.8 85 65.9
A06p18160 Brassica napus HOM05D003381 ORTHO05D003880 5.2e-21 104.4 93 63.4
BcaC09g49963 Brassica carinata HOM05D003381 ORTHO05D003880 1.2e-17 93.2 61 80.3
Aa31LG4G18060 Aethionema arabicum HOM05D003381 ORTHO05D003880 7.7e-17 90.5 89 60.7
unitig_60.g25635 Utricularia gibba HOM05D003381 ORTHO05D003880 3.6e-14 81.6 78 60.3
Atru.chr12.2499 Acer truncatum HOM05D003381 ORTHO05D003880 1.0e-13 80.1 80 55.0
Atru.chr12.2523 Acer truncatum HOM05D003381 ORTHO05D003880 1.0e-13 80.1 80 55.0
Sopen06g029340 Solanum pennellii HOM05D003381 ORTHO05D003880 1.5e-12 76.3 99 48.5
Cpa.g.sc3.189 Carica papaya HOM05D003381 ORTHO05D003880 2.6e-12 75.5 73 58.9
Lalb_Chr08g0239391 Lupinus albus HOM05D003381 ORTHO05D003880 2.6e-12 75.5 112 42.0
Phvul.009G040500 Phaseolus vulgaris HOM05D003381 ORTHO05D003880 7.5e-12 73.9 86 48.8
Potri.012G004500 Populus trichocarpa HOM05D003381 ORTHO05D003880 1.3e-11 73.2 83 53.0
Ca_16840_v3 Cicer arietinum L. HOM05D003381 ORTHO05D003880 1.7e-11 72.8 94 46.8
Psat5g070520 Pisum sativum HOM05D003381 ORTHO05D003880 3.7e-11 71.6 94 46.8
Sed0013785 Sechium edule HOM05D003381 ORTHO05D003880 3.7e-11 71.6 76 52.6
AT3G49580 Arabidopsis thaliana HOM05D003381 ORTHO05D003880 4.8e-11 71.2 58 65.5
Medtr3g093400 Medicago truncatula HOM05D003381 ORTHO05D003880 4.8e-11 71.2 104 44.2
Potri.015G000500 Populus trichocarpa HOM05D003381 ORTHO05D003880 4.8e-11 71.2 74 54.1
Sabra12G0000400 Salix brachista HOM05D003381 ORTHO05D003880 6.3e-11 70.9 74 54.1
CAN.G303.62 Capsicum annuum HOM05D003381 ORTHO05D003880 8.3e-11 70.5 90 48.9
Sabra15G0000300 Salix brachista HOM05D003381 ORTHO05D003880 8.3e-11 70.5 74 52.7
Hma1.2p1_0115F.1_g055840 Hydrangea macrophylla HOM05D003381 ORTHO05D003880 1.1e-10 70.1 89 48.3
Psat5g070560 Pisum sativum HOM05D003381 ORTHO05D003880 1.1e-10 70.1 100 48.0
TPR.G35911 Trifolium pratense HOM05D003381 ORTHO05D003880 1.1e-10 70.1 98 46.9
Lj1g0021256 Lotus japonicus HOM05D003381 ORTHO05D003880 1.4e-10 69.7 98 46.9
Peaxi162Scf00007g00254 Petunia axillaris HOM05D003381 ORTHO05D003880 1.8e-10 69.3 90 44.4
Glyma.06G139300 Glycine max HOM05D003381 ORTHO05D003880 3.1e-10 68.6 92 48.9
Lalb_Chr10g0102971 Lupinus albus HOM05D003381 ORTHO05D003880 3.1e-10 68.6 78 47.4
Lalb_Chr11g0067571 Lupinus albus HOM05D003381 ORTHO05D003880 3.1e-10 68.6 107 42.1
HanXRQChr08g0225861 Helianthus annuus HOM05D003381 ORTHO05D003880 4.1e-10 68.2 90 45.6
Nitab4.5_0007121g0010 Nicotiana tabacum HOM05D003381 ORTHO05D003880 4.1e-10 68.2 88 47.7
PGSC0003DMG400027025 Solanum tuberosum HOM05D003381 ORTHO05D003880 5.4e-10 67.8 84 47.6
CANSAT21G1431 Cannabis sativa HOM05D003381 ORTHO05D003880 7.0e-10 67.4 82 46.3
Migut.F00121 Erythranthe guttata HOM05D003381 ORTHO05D003880 1.2e-09 66.6 88 45.5
Gohir.A08G106600 Gossypium hirsutum HOM05D003381 ORTHO05D003880 1.2e-09 66.6 80 48.8
Manes.01G002300 Manihot esculenta HOM05D003381 ORTHO05D003880 1.2e-09 66.6 82 46.3
Solyc03g096760.1 Solanum lycopersicum HOM05D003381 ORTHO05D003880 1.2e-09 66.6 77 51.9
Sopen03g027490 Solanum pennellii HOM05D003381 ORTHO05D003880 1.2e-09 66.6 77 51.9
AUR62005946 Chenopodium quinoa HOM05D003381 ORTHO05D003880 1.6e-09 66.2 77 48.1
TWI81G0192 Tripterygium wilfordii HOM05D003381 ORTHO05D003880 1.6e-09 66.2 87 47.1
MSTRG.26951 Avicennia marina HOM05D003381 ORTHO05D003880 2.0e-09 65.9 89 48.3
Migut.F00967 Erythranthe guttata HOM05D003381 ORTHO05D003880 3.5e-09 65.1 89 50.6
HanXRQChr08g0225881 Helianthus annuus HOM05D003381 ORTHO05D003880 4.5e-09 64.7 90 44.4
COL.COLO4_14402 Corchorus olitorius HOM05D003381 ORTHO05D003880 5.9e-09 64.3 55 58.2
Dinv17275 Davidia involucrata HOM05D003381 ORTHO05D003880 5.9e-09 64.3 89 44.9
Lalb_Chr04g0252571 Lupinus albus HOM05D003381 ORTHO05D003880 5.9e-09 64.3 89 41.6
CSS0002942 Camellia sinensis var. sinensis HOM05D003381 ORTHO05D003880 7.7e-09 63.9 96 46.9
ClCG01G000030 Citrullus lanatus HOM05D003381 ORTHO05D003880 1.0e-08 63.5 84 46.4
HanXRQChr08g0225771 Helianthus annuus HOM05D003381 ORTHO05D003880 1.0e-08 63.5 89 44.9
HanXRQChr08g0225851 Helianthus annuus HOM05D003381 ORTHO05D003880 1.0e-08 63.5 89 44.9
Glyma.04G225500 Glycine max HOM05D003381 ORTHO05D003880 1.3e-08 63.2 98 44.9
RcHm_v2.0_Chr1g0383321 Rosa chinensis HOM05D003381 ORTHO05D003880 1.3e-08 63.2 81 48.1
CANSAT21G0934 Cannabis sativa HOM05D003381 ORTHO05D003880 1.7e-08 62.8 82 42.7
Dinv29190 Davidia involucrata HOM05D003381 ORTHO05D003880 1.7e-08 62.8 68 50.0
CSS0005275 Camellia sinensis var. sinensis HOM05D003381 ORTHO05D003880 2.2e-08 62.4 84 45.2
SGA_v2.0_scaffold351G49675 Striga asiatica HOM05D003381 ORTHO05D003880 2.2e-08 62.4 92 44.6
AUR62028119 Chenopodium quinoa HOM05D003381 ORTHO05D003880 2.9e-08 62.0 87 43.7
Nitab4.5_0002691g0080 Nicotiana tabacum HOM05D003381 ORTHO05D003880 2.9e-08 62.0 95 46.3
Peaxi162Scf00815g00116 Petunia axillaris HOM05D003381 ORTHO05D003880 2.9e-08 62.0 89 47.2
Sopen03g027520 Solanum pennellii HOM05D003381 ORTHO05D003880 2.9e-08 62.0 90 47.8
PGSC0003DMG400000545 Solanum tuberosum HOM05D003381 ORTHO05D003880 2.9e-08 62.0 90 47.8
Ciclev10022951m.g Citrus clementina HOM05D003381 ORTHO05D003880 3.8e-08 61.6 69 47.8
Prupe.2G322300 Prunus persica HOM05D003381 ORTHO05D003880 3.8e-08 61.6 90 48.9
Solyc03g096780.1 Solanum lycopersicum HOM05D003381 ORTHO05D003880 3.8e-08 61.6 90 47.8
TAR374G1397 Trochodendron aralioides HOM05D003381 ORTHO05D003880 3.8e-08 61.6 76 48.7
CAN.G65.142 Capsicum annuum HOM05D003381 ORTHO05D003880 5.0e-08 61.2 63 54.0
Migut.F00966 Erythranthe guttata HOM05D003381 ORTHO05D003880 5.0e-08 61.2 73 46.6
Nitab4.5_0002691g0070 Nicotiana tabacum HOM05D003381 ORTHO05D003880 5.0e-08 61.2 95 46.3
Peaxi162Scf00685g10014 Petunia axillaris HOM05D003381 ORTHO05D003880 5.0e-08 61.2 62 50.0
VMungo1309G1451 Vigna mungo HOM05D003381 ORTHO05D003880 5.0e-08 61.2 87 44.8
Cc02_g00580 Coffea canephora HOM05D003381 ORTHO05D003880 6.5e-08 60.8 83 41.0
FAN03G2343 Fragaria x ananassa HOM05D003381 ORTHO05D003880 6.5e-08 60.8 81 45.7
ECA233G1855 Erigeron canadensis HOM05D003381 ORTHO05D003880 8.5e-08 60.5 89 41.6
Glyma.14G188300 Glycine max HOM05D003381 ORTHO05D003880 8.5e-08 60.5 85 43.5
Lsat_1_v5_gn_8_4301 Lactuca sativa HOM05D003381 ORTHO05D003880 8.5e-08 60.5 61 54.1
Haze_00337 Corylus avellana HOM05D003381 ORTHO05D003880 1.1e-07 60.1 88 43.2
Sopen03g027500 Solanum pennellii HOM05D003381 ORTHO05D003880 1.5e-07 59.7 90 45.6
CsaV3_5G000160 Cucumis sativus L. HOM05D003381 ORTHO05D003880 1.9e-07 59.3 87 46.0
FAN10G2693 Fragaria x ananassa HOM05D003381 ORTHO05D003880 1.9e-07 59.3 81 45.7
FAN10G4285 Fragaria x ananassa HOM05D003381 ORTHO05D003880 1.9e-07 59.3 81 45.7
Gohir.A08G106800 Gossypium hirsutum HOM05D003381 ORTHO05D003880 1.9e-07 59.3 83 44.6
Actinidia34289 Actinidia chinensis HOM05D003381 ORTHO05D003880 2.5e-07 58.9 76 47.4
CAN.G303.61 Capsicum annuum HOM05D003381 ORTHO05D003880 2.5e-07 58.9 87 47.1
Solyc06g072990.1 Solanum lycopersicum HOM05D003381 ORTHO05D003880 2.5e-07 58.9 98 43.9
Gohir.D08G117850 Gossypium hirsutum HOM05D003381 ORTHO05D003880 3.2e-07 58.5 80 46.2
Gorai.004G126400 Gossypium raimondii HOM05D003381 ORTHO05D003880 3.2e-07 58.5 80 46.2
TWI81G0266 Tripterygium wilfordii HOM05D003381 ORTHO05D003880 3.2e-07 58.5 87 43.7
MD07G1303600 Malus domestica HOM05D003381 ORTHO05D003880 4.2e-07 58.2 97 43.3
Duzib084G1005 Durio zibethinus HOM05D003381 ORTHO05D003880 5.5e-07 57.8 84 44.0
SpUn0007_0020 Schrenkiella parvula HOM05D003381 ORTHO05D372657 5.5e-07 57.8 34 88.2
TAR375G0964 Trochodendron aralioides HOM05D003381 ORTHO05D003880 5.5e-07 57.8 75 48.0
HanXRQChr16g0499781 Helianthus annuus HOM05D003381 ORTHO05D003880 7.2e-07 57.4 75 42.7
Oeu063749.1 Olea europaea HOM05D003381 ORTHO05D003880 7.2e-07 57.4 100 41.0
Ah.13g071060 Amaranthus hybridus HOM05D003381 ORTHO05D003880 9.4e-07 57.0 78 44.9
Aqoxy5G04393 Aquilegia oxysepala HOM05D003381 ORTHO05D003880 9.4e-07 57.0 74 45.9
Sc14g0006700 Simmondsia chinensis HOM05D003381 ORTHO05D003880 9.4e-07 57.0 74 45.9
DCAR_010556 Daucus carota HOM05D003381 ORTHO05D003880 1.2e-06 56.6 92 41.3
ECA232G1694 Erigeron canadensis HOM05D003381 ORTHO05D003880 1.2e-06 56.6 66 43.9
Phvul.008G187900 Phaseolus vulgaris HOM05D003381 ORTHO05D003880 1.2e-06 56.6 78 41.0
PGSC0003DMG400000547 Solanum tuberosum HOM05D003381 ORTHO05D003880 1.2e-06 56.6 80 48.8
Zm00001eb231110 Zea mays HOM05D003381 ORTHO05D003880 1.2e-06 56.6 73 46.6
Oeu055427.1 Olea europaea HOM05D003381 ORTHO05D003880 1.6e-06 56.2 67 49.3
SalBow4G1643 Salvia bowleyana HOM05D003381 ORTHO05D003880 1.6e-06 56.2 54 51.9
EL10Ac3g05129 Beta vulgaris HOM05D003381 ORTHO05D003880 2.1e-06 55.8 96 39.6
CiPaw.06G038100 Carya illinoinensis HOM05D003381 ORTHO05D003880 2.1e-06 55.8 52 57.7
LjContig00155g0019595 Lotus japonicus HOM05D003381 ORTHO05D003880 2.1e-06 55.8 80 46.2
PGR142G3642 Punica granatum HOM05D003381 ORTHO05D003880 2.7e-06 55.5 78 44.9
EL10Ac3g05128 Beta vulgaris HOM05D003381 ORTHO05D003880 3.6e-06 55.1 79 44.3
Migut.F00119 Erythranthe guttata HOM05D003381 ORTHO05D003880 3.6e-06 55.1 73 45.2
Gohir.D08G117900 Gossypium hirsutum HOM05D003381 ORTHO05D003880 3.6e-06 55.1 94 41.5
Gorai.004G126500 Gossypium raimondii HOM05D003381 ORTHO05D003880 3.6e-06 55.1 94 41.5
Nitab4.5_0000115g0190 Nicotiana tabacum HOM05D003381 ORTHO05D003880 3.6e-06 55.1 90 45.6
Nitab4.5_0002867g0010 Nicotiana tabacum HOM05D003381 ORTHO05D003880 4.7e-06 54.7 95 43.2
SalBow4G2332 Salvia bowleyana HOM05D003381 ORTHO05D003880 4.7e-06 54.7 90 42.2
AUR62005945 Chenopodium quinoa HOM05D003381 ORTHO05D003880 6.1e-06 54.3 68 45.6
Oeu017357.1 Olea europaea HOM05D003381 ORTHO05D003880 8.0e-06 53.9 98 38.8


User provided reference genes

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