Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
BcaC03g17887 Brassica carinata HOM05D003935 ORTHO05D005096 4.9e-34 147.1 69 100.0
BcaC04g19029 Brassica carinata HOM05D003935 ORTHO05D005096 2.3e-23 111.7 53 98.1
C07p45210 Brassica napus HOM05D003935 ORTHO05D005096 7.8e-16 86.7 43 93.0
BolC7t45044H Brassica oleracea HOM05D003935 ORTHO05D005096 7.8e-16 86.7 43 93.0
BcaC06g33158 Brassica carinata HOM05D003935 ORTHO05D005096 1.3e-15 85.9 43 93.0
AL7G47000 Arabidopsis lyrata HOM05D003935 ORTHO05D003430 3.0e-15 84.7 43 90.7
BcaC06g33155 Brassica carinata HOM05D003935 ORTHO05D005096 3.0e-15 84.7 43 90.7
A03p47100 Brassica napus HOM05D003935 ORTHO05D005096 3.0e-15 84.7 43 90.7
BraA03t13837Z Brassica rapa HOM05D003935 ORTHO05D005096 3.0e-15 84.7 43 90.7
Sp2g24700 Schrenkiella parvula HOM05D003935 ORTHO05D005096 3.0e-15 84.7 43 90.7
AL8G38190 Arabidopsis lyrata HOM05D003935 ORTHO05D005096 6.6e-15 83.6 43 88.4
Aa31LG11G1910 Aethionema arabicum HOM05D003935 ORTHO05D005096 1.5e-14 82.4 43 88.4
Thhalv10004633m.g Eutrema salsugineum HOM05D003935 ORTHO05D005096 1.5e-14 82.4 43 88.4
Carub.0008s2219 Capsella rubella HOM05D003935 ORTHO05D005096 3.3e-14 81.3 43 86.0
CARHR275270 Cardamine hirsuta HOM05D003935 ORTHO05D005096 3.3e-14 81.3 43 86.0
THA.LOC104819415 Tarenaya hassleriana HOM05D003935 ORTHO05D005096 3.3e-14 81.3 43 83.7
BcaB05g21604 Brassica carinata HOM05D003935 ORTHO05D005096 5.6e-14 80.5 43 83.7
Thhalv10014155m.g Eutrema salsugineum HOM05D003935 ORTHO05D005096 5.6e-14 80.5 43 83.7
Sp6g35250 Schrenkiella parvula HOM05D003935 ORTHO05D005096 5.6e-14 80.5 43 83.7
AT5G61500 Arabidopsis thaliana HOM05D003935 ORTHO05D005096 2.1e-13 78.6 43 81.4
BolC2t06285H Brassica oleracea HOM05D003935 ORTHO05D005096 2.1e-13 78.6 43 81.4
BraA02t04926Z Brassica rapa HOM05D003935 ORTHO05D005096 2.1e-13 78.6 43 81.4
Cpa.g.sc16.168 Carica papaya HOM05D003935 ORTHO05D005096 2.8e-13 78.2 45 77.8
Aa31LG3G18800 Aethionema arabicum HOM05D003935 ORTHO05D005096 4.8e-13 77.4 43 81.4
BcaB05g21605 Brassica carinata HOM05D003935 ORTHO05D005096 1.1e-12 76.3 43 79.1
BcaC03g13194 Brassica carinata HOM05D003935 ORTHO05D005096 1.1e-12 76.3 43 79.1
C02p03220 Brassica napus HOM05D004498 ORTHO05D005300 1.1e-12 76.3 43 79.1
THA.LOC104801570 Tarenaya hassleriana HOM05D003935 ORTHO05D005096 1.1e-12 76.3 43 79.1
QL04p034713 Quercus lobata HOM05D003935 ORTHO05D005096 1.8e-12 75.5 43 79.1
Atru.chr1.845 Acer truncatum HOM05D003935 ORTHO05D005096 2.4e-12 75.1 43 76.7
CiPaw.14G023500 Carya illinoinensis HOM05D003935 ORTHO05D005096 2.4e-12 75.1 43 79.1
Lsat_1_v5_gn_9_51820 Lactuca sativa HOM05D003935 ORTHO05D005096 3.1e-12 74.7 44 77.3
Glyma.09G231000 Glycine max HOM05D003935 ORTHO05D005096 4.0e-12 74.3 44 79.5
Glyma.12G005700 Glycine max HOM05D003935 ORTHO05D005096 4.0e-12 74.3 44 79.5
Gohir.A08G137866 Gossypium hirsutum HOM05D003935 ORTHO05D005096 4.0e-12 74.3 43 76.7
Gohir.D08G159150 Gossypium hirsutum HOM05D003935 ORTHO05D005096 4.0e-12 74.3 43 76.7
Gorai.004G165200 Gossypium raimondii HOM05D003935 ORTHO05D005096 4.0e-12 74.3 43 76.7
HanXRQChr15g0485951 Helianthus annuus HOM05D003935 ORTHO05D005096 4.0e-12 74.3 44 77.3
CANSAT21G2109 Cannabis sativa HOM05D003935 ORTHO05D005096 5.3e-12 73.9 44 79.5
HanXRQChr16g0512861 Helianthus annuus HOM05D003935 ORTHO05D005096 5.3e-12 73.9 44 77.3
Oeu031400.2 Olea europaea HOM05D003935 ORTHO05D005096 5.3e-12 73.9 44 79.5
Psat7g207040 Pisum sativum HOM05D003935 ORTHO05D005096 5.3e-12 73.9 44 79.5
Potri.001G126500 Populus trichocarpa HOM05D003935 ORTHO05D005096 6.9e-12 73.6 44 77.3
Sabra03G0073800 Salix brachista HOM05D003935 ORTHO05D005096 6.9e-12 73.6 44 77.3
COL.COLO4_12445 Corchorus olitorius HOM05D003935 ORTHO05D005096 9.0e-12 73.2 43 74.4
Duzib138G0818 Durio zibethinus HOM05D003935 ORTHO05D005096 9.0e-12 73.2 43 76.7
ECA232G4201 Erigeron canadensis HOM05D003935 ORTHO05D005096 9.0e-12 73.2 44 75.0
Lalb_Chr01g0000281 Lupinus albus HOM05D003935 ORTHO05D005096 9.0e-12 73.2 44 79.5
Sabra01G0097600 Salix brachista HOM05D003935 ORTHO05D005096 9.0e-12 73.2 42 78.6
Thecc.01G388100 Theobroma cacao HOM05D003935 ORTHO05D005096 9.0e-12 73.2 43 74.4
Duzib133G0969 Durio zibethinus HOM05D003935 ORTHO05D005096 1.2e-11 72.8 43 72.1
Ca_12623_v3 Cicer arietinum L. HOM05D003935 ORTHO05D005096 1.5e-11 72.4 44 77.3
Manes.06G132800 Manihot esculenta HOM05D003935 ORTHO05D005096 1.5e-11 72.4 44 75.0
Nitab4.5_0000448g0060 Nicotiana tabacum HOM05D003935 ORTHO05D005096 1.5e-11 72.4 44 77.3
Potri.003G107000 Populus trichocarpa HOM05D003935 ORTHO05D005096 1.5e-11 72.4 44 75.0
PGR142G1672 Punica granatum HOM05D003935 ORTHO05D005096 1.5e-11 72.4 44 77.3
Migut.F00500 Erythranthe guttata HOM05D003935 ORTHO05D005096 2.0e-11 72.0 44 77.3
Lalb_Chr19g0126281 Lupinus albus HOM05D003935 ORTHO05D005096 2.0e-11 72.0 44 77.3
TPR.G3680 Trifolium pratense HOM05D003935 ORTHO05D005096 2.0e-11 72.0 44 77.3
RcHm_v2.0_Chr1g0346321 Rosa chinensis HOM05D003935 ORTHO05D005096 3.4e-11 71.2 41 73.2
MSTRG.27208 Avicennia marina HOM05D003935 ORTHO05D005096 4.5e-11 70.9 44 75.0
DCAR_020181 Daucus carota HOM05D003935 ORTHO05D005096 4.5e-11 70.9 41 75.6
Eucgr.K00175 Eucalyptus grandis HOM05D003935 ORTHO05D005096 4.5e-11 70.9 44 72.7
Medtr4g036265 Medicago truncatula HOM05D003935 ORTHO05D005096 4.5e-11 70.9 44 75.0
GSVIVG01018224001 Vitis vinifera HOM05D003935 ORTHO05D005096 4.5e-11 70.9 44 75.0
AUR62002246 Chenopodium quinoa HOM05D003935 ORTHO05D005096 5.8e-11 70.5 44 72.7
AUR62015457 Chenopodium quinoa HOM05D003935 ORTHO05D005096 5.8e-11 70.5 44 72.7
Nitab4.5_0000262g0090 Nicotiana tabacum HOM05D003935 ORTHO05D005096 5.8e-11 70.5 44 75.0
Haze_02753 Corylus avellana HOM05D003935 ORTHO05D005096 7.6e-11 70.1 43 72.1
Sc10g0008570 Simmondsia chinensis HOM05D003935 ORTHO05D005096 7.6e-11 70.1 45 71.1
Dinv06578 Davidia involucrata HOM05D003935 ORTHO05D005096 9.9e-11 69.7 44 75.0
Dinv16851 Davidia involucrata HOM05D003935 ORTHO05D005096 9.9e-11 69.7 44 75.0
Gohir.A07G148000 Gossypium hirsutum HOM05D003935 ORTHO05D005096 9.9e-11 69.7 43 72.1
Gohir.D07G154200 Gossypium hirsutum HOM05D003935 ORTHO05D005096 9.9e-11 69.7 43 72.1
Gorai.001G176400 Gossypium raimondii HOM05D003935 ORTHO05D005096 9.9e-11 69.7 43 72.1
Nn6g33882 Nelumbo nucifera HOM05D003935 ORTHO05D005096 9.9e-11 69.7 44 75.0
Nitab4.5_0001267g0110 Nicotiana tabacum HOM05D003935 ORTHO05D005096 9.9e-11 69.7 44 72.7
Nitab4.5_0001358g0020 Nicotiana tabacum HOM05D003935 ORTHO05D005096 9.9e-11 69.7 44 72.7
Actinidia01047 Actinidia chinensis HOM05D003935 ORTHO05D005096 1.3e-10 69.3 44 75.0
arahy.Tifrunner.gnm1.ann1.16SP4W Arachis hypogaea HOM05D003935 ORTHO05D005096 1.3e-10 69.3 44 72.7
arahy.Tifrunner.gnm1.ann1.2B4GQV Arachis hypogaea HOM05D003935 ORTHO05D005096 1.3e-10 69.3 44 72.7
arahy.Tifrunner.gnm1.ann1.9TCX0P Arachis hypogaea HOM05D003935 ORTHO05D005096 1.3e-10 69.3 44 72.7
arahy.Tifrunner.gnm1.ann1.YZL4IN Arachis hypogaea HOM05D003935 ORTHO05D005096 1.3e-10 69.3 44 72.7
MSTRG.8834 Avicennia marina HOM05D003935 ORTHO05D005096 1.3e-10 69.3 44 75.0
Phvul.011G006500 Phaseolus vulgaris HOM05D003935 ORTHO05D005096 1.3e-10 69.3 44 72.7
Rhsim09G0190400 Rhododendron simsii HOM05D003935 ORTHO05D005096 1.3e-10 69.3 44 75.0
ClCG06G002480 Citrullus lanatus HOM05D003935 ORTHO05D005096 1.7e-10 68.9 44 72.7
Hma1.2p1_0432F.1_g151940 Hydrangea macrophylla HOM05D003935 ORTHO05D005096 1.7e-10 68.9 44 70.5
Prupe.2G123000 Prunus persica HOM05D003935 ORTHO05D005096 1.7e-10 68.9 43 72.1
SalBow1G3743 Salvia bowleyana HOM05D003935 ORTHO05D005096 1.7e-10 68.9 41 80.5
Sed0016106 Sechium edule HOM05D003935 ORTHO05D005096 1.7e-10 68.9 44 72.7
EL10Ac3g05885 Beta vulgaris HOM05D003935 ORTHO05D005096 2.2e-10 68.6 44 70.5
Ciclev10005442m.g Citrus clementina HOM05D003935 ORTHO05D005096 2.2e-10 68.6 45 73.3
MELO3C022280.2 Cucumis melo HOM05D003935 ORTHO05D005096 2.2e-10 68.6 44 72.7
Solyc06g034160.3 Solanum lycopersicum HOM05D003935 ORTHO05D005096 2.2e-10 68.6 44 72.7
Sopen06g010820 Solanum pennellii HOM05D003935 ORTHO05D005096 2.2e-10 68.6 44 72.7
PGSC0003DMG400021594 Solanum tuberosum HOM05D003935 ORTHO05D005096 2.2e-10 68.6 44 72.7
Actinidia24986 Actinidia chinensis HOM05D003935 ORTHO05D005096 2.9e-10 68.2 44 72.7
Cc02_g04470 Coffea canephora HOM05D003935 ORTHO05D005096 2.9e-10 68.2 44 70.5
CsaV3_6G008640 Cucumis sativus L. HOM05D003935 ORTHO05D005096 2.9e-10 68.2 44 72.7
TWI14G1423 Tripterygium wilfordii HOM05D003935 ORTHO05D005096 2.9e-10 68.2 44 72.7
VMungo1127G0071 Vigna mungo HOM05D003935 ORTHO05D005096 2.9e-10 68.2 44 70.5
PSO063G2499 Papaver somniferum HOM05D003935 ORTHO05D005096 3.8e-10 67.8 44 70.5
PSO782G0781 Papaver somniferum HOM05D003935 ORTHO05D005096 3.8e-10 67.8 44 70.5
Hund04562 Selenicereus undatus HOM05D003935 ORTHO05D005096 3.8e-10 67.8 44 70.5
SGA_v2.0_scaffold44G16558 Striga asiatica HOM05D003935 ORTHO05D005096 3.8e-10 67.8 44 72.7
Actinidia13591 Actinidia chinensis HOM05D003935 ORTHO05D005096 4.9e-10 67.4 44 70.5
CSS0045715 Camellia sinensis var. sinensis HOM05D003935 ORTHO05D005096 4.9e-10 67.4 44 72.7
Aqoxy7G00829 Aquilegia oxysepala HOM05D003935 ORTHO05D005096 6.4e-10 67.0 44 68.2
Hma1.2p1_1132F.1_g260170 Hydrangea macrophylla HOM05D003935 ORTHO05D005096 6.4e-10 67.0 43 65.1
Lj1C977G12 Lonicera japonica HOM05D003935 ORTHO05D005096 8.4e-10 66.6 44 70.5
TAR374G1483 Trochodendron aralioides HOM05D003935 ORTHO05D005096 8.4e-10 66.6 44 68.2
vmacro09915 Vaccinium macrocarpon HOM05D003935 ORTHO05D005096 8.4e-10 66.6 44 72.7
CSS0046772 Camellia sinensis var. sinensis HOM05D003935 ORTHO05D005096 1.1e-09 66.2 44 72.7
CAN.G330.5 Capsicum annuum HOM05D003935 ORTHO05D005096 1.1e-09 66.2 44 70.5
Cfa012922 Carpinus fangiana HOM05D003935 ORTHO05D005096 1.1e-09 66.2 44 70.5
MD02G1218100 Malus domestica HOM05D003935 ORTHO05D005096 1.1e-09 66.2 41 73.2
MD07G1099100 Malus domestica HOM05D003935 ORTHO05D005096 1.1e-09 66.2 39 71.8
Lj3g0013928 Lotus japonicus HOM05D003935 ORTHO05D005096 1.4e-09 65.9 42 73.8
Peaxi162Scf00304g01342 Petunia axillaris HOM05D003935 ORTHO05D005096 1.4e-09 65.9 44 68.2
Ah.07g207480 Amaranthus hybridus HOM05D003935 ORTHO05D005096 1.9e-09 65.5 44 70.5
CiPaw.07G237000 Carya illinoinensis HOM05D003935 ORTHO05D005096 2.4e-09 65.1 49 63.3
Lsat_1_v5_gn_5_9340 Lactuca sativa HOM05D003935 ORTHO05D005096 2.4e-09 65.1 44 68.2
FvH4_7g09530 Fragaria vesca HOM05D003935 ORTHO05D005096 3.2e-09 64.7 46 65.2
FAN03G1633 Fragaria x ananassa HOM05D003935 ORTHO05D005096 3.2e-09 64.7 46 65.2
FAN06G5089 Fragaria x ananassa HOM05D003935 ORTHO05D005096 3.2e-09 64.7 46 65.2
FAN10G2569 Fragaria x ananassa HOM05D003935 ORTHO05D005096 3.2e-09 64.7 46 65.2
FAN10G4028 Fragaria x ananassa HOM05D003935 ORTHO05D005096 3.2e-09 64.7 46 65.2
FAN01G1603 Fragaria x ananassa HOM05D003935 ORTHO05D005096 4.2e-09 64.3 46 65.2
SEGI_20183 Sequoiadendron giganteum HOM05D003935 ORTHO05D005096 4.2e-09 64.3 41 61.0
FAN06G4162 Fragaria x ananassa HOM05D003935 ORTHO05D005096 5.4e-09 63.9 46 65.2
ATR0057G070 Amborella trichopoda HOM05D003935 ORTHO05D005096 1.6e-08 62.4 43 67.4
CDE04G2838 Ceratophyllum demersum HOM05D003935 ORTHO05D005096 6.0e-08 60.5 44 68.2
Rhsim03G0165100 Rhododendron simsii HOM05D003935 ORTHO05D005096 6.0e-08 60.5 44 65.9
QL02p025668 Quercus lobata HOM05D003935 ORTHO05D005096 1.0e-07 59.7 44 65.9
Pp3c8_11900 Physcomitrium patens HOM05D003935 ORTHO05D005096 3.9e-07 57.8 43 58.1
Haze_21276 Corylus avellana HOM05D003935 ORTHO05D005096 5.1e-07 57.4 43 62.8
Mapoly0003s0208 Marchantia polymorpha HOM05D003935 ORTHO05D005096 1.5e-06 55.8 44 61.4


User provided reference genes

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