Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
BcaC03g17858 Brassica carinata HOM05D005634 ORTHO05D006926 1.7e-131 472.6 227 100.0
C02p59000 Brassica napus HOM05D005634 ORTHO05D006926 4.6e-89 331.6 160 99.4
BolC2t11955H Brassica oleracea HOM05D005634 ORTHO05D006926 2.3e-88 329.3 160 98.8
BolC3t20661H Brassica oleracea HOM05D005634 ORTHO05D006926 1.3e-83 313.5 160 94.4
C03p83850 Brassica napus HOM05D005634 ORTHO05D006926 4.2e-82 308.5 160 93.8
C09p11080 Brassica napus HOM05D005634 ORTHO05D006926 4.2e-82 308.5 160 93.8
A07p23910 Brassica napus HOM05D005634 ORTHO05D006926 4.5e-76 288.5 179 82.7
BraA10t44343Z Brassica rapa HOM05D005634 ORTHO05D006926 2.9e-75 285.8 179 82.1
BcaC09g50547 Brassica carinata HOM05D005634 ORTHO05D006926 3.1e-45 186.0 95 91.6
C01p24050 Brassica napus HOM05D005634 ORTHO05D006926 3.1e-45 186.0 95 91.6
BolC1t02361H Brassica oleracea HOM05D005634 ORTHO05D006926 3.1e-45 186.0 95 91.6
BraA01t01856Z Brassica rapa HOM05D005634 ORTHO05D006926 3.1e-45 186.0 95 91.6
A01p19140 Brassica napus HOM05D005634 ORTHO05D006926 9.1e-45 184.5 95 90.5
BcaNung01637 Brassica carinata HOM05D005634 ORTHO05D006926 1.2e-44 184.1 103 83.5
Thhalv10026171m.g Eutrema salsugineum HOM05D005634 ORTHO05D006926 4.5e-44 182.2 95 88.4
Carub.0007s1312 Capsella rubella HOM05D005634 ORTHO05D006926 8.5e-43 177.9 95 88.4
AL7G24960 Arabidopsis lyrata HOM05D005634 ORTHO05D006926 1.9e-42 176.8 95 88.4
AT4G27700 Arabidopsis thaliana HOM05D005634 ORTHO05D006926 1.9e-42 176.8 95 88.4
CARHR235430 Cardamine hirsuta HOM05D005634 ORTHO05D006926 9.4e-42 174.5 95 86.3
THA.LOC104799954 Tarenaya hassleriana HOM05D005634 ORTHO05D006926 1.0e-40 171.0 113 71.7
Aa31LG11G15270 Aethionema arabicum HOM05D005634 ORTHO05D006926 3.0e-40 169.5 95 81.1
Haze_00263 Corylus avellana HOM05D005634 ORTHO05D006926 2.2e-38 163.3 104 73.1
MD01G1225500 Malus domestica HOM05D005634 ORTHO05D006926 2.2e-38 163.3 124 61.3
Cfa016192 Carpinus fangiana HOM05D005634 ORTHO05D006926 3.7e-38 162.5 103 72.8
QL09p007605 Quercus lobata HOM05D005634 ORTHO05D006926 6.3e-38 161.8 103 72.8
Dinv29241 Davidia involucrata HOM05D005634 ORTHO05D006926 1.1e-37 161.0 95 76.8
Cpa.g.sc3.123 Carica papaya HOM05D005634 ORTHO05D006926 2.4e-37 159.8 103 72.8
Cc02_g01130 Coffea canephora HOM05D005634 ORTHO05D006926 2.4e-37 159.8 103 70.9
TWI39G0994 Tripterygium wilfordii HOM05D005634 ORTHO05D006926 2.4e-37 159.8 103 70.9
vmacro10142 Vaccinium macrocarpon HOM05D005634 ORTHO05D006926 2.4e-37 159.8 113 69.0
CSS0047779 Camellia sinensis var. sinensis HOM05D005634 ORTHO05D006926 3.1e-37 159.5 95 76.8
CDE11G0057 Ceratophyllum demersum HOM05D005634 ORTHO05D006926 3.1e-37 159.5 103 70.9
CsaV3_3G019650 Cucumis sativus L. HOM05D005634 ORTHO05D006926 3.1e-37 159.5 95 75.8
Sabra15G0006100 Salix brachista HOM05D005634 ORTHO05D006926 3.1e-37 159.5 104 71.2
MELO3C019382.2 Cucumis melo HOM05D005634 ORTHO05D006926 4.1e-37 159.1 103 70.9
Potri.015G008000 Populus trichocarpa HOM05D005634 ORTHO05D006926 4.1e-37 159.1 138 56.5
Sed0004447 Sechium edule HOM05D005634 ORTHO05D006926 4.1e-37 159.1 103 71.8
MD07G1296000 Malus domestica HOM05D005634 ORTHO05D006926 5.3e-37 158.7 141 53.9
CiPaw.05G201100 Carya illinoinensis HOM05D005634 ORTHO05D006926 7.0e-37 158.3 103 69.9
Lj3A901T75 Lonicera japonica HOM05D005634 ORTHO05D006926 7.0e-37 158.3 104 70.2
CDE09G0596 Ceratophyllum demersum HOM05D005634 ORTHO05D006926 9.1e-37 157.9 103 71.8
MBI12_g30967_MAGBIO Magnolia biondii HOM05D005634 ORTHO05D006926 9.1e-37 157.9 95 75.8
Prupe.2G315600 Prunus persica HOM05D005634 ORTHO05D006926 9.1e-37 157.9 124 60.5
TAR629G3370 Trochodendron aralioides HOM05D005634 ORTHO05D006926 9.1e-37 157.9 94 75.5
Atru.chr12.2317 Acer truncatum HOM05D005634 ORTHO05D006926 1.2e-36 157.5 103 70.9
Dinv35363 Davidia involucrata HOM05D005634 ORTHO05D006926 1.2e-36 157.5 96 74.0
Migut.F00174 Erythranthe guttata HOM05D005634 ORTHO05D006926 1.6e-36 157.1 103 71.8
PGR142G2679 Punica granatum HOM05D005634 ORTHO05D006926 1.6e-36 157.1 103 69.9
Sc25g0000970 Simmondsia chinensis HOM05D005634 ORTHO05D006926 1.6e-36 157.1 138 56.5
Actinidia18672 Actinidia chinensis HOM05D005634 ORTHO05D006926 2.0e-36 156.8 95 72.6
Glyma.04G232400 Glycine max HOM05D005634 ORTHO05D006926 2.0e-36 156.8 95 74.7
HanXRQChr06g0175631 Helianthus annuus HOM05D005634 ORTHO05D006926 2.0e-36 156.8 95 73.7
Lsat_1_v5_gn_8_5560 Lactuca sativa HOM05D005634 ORTHO05D006926 2.0e-36 156.8 97 73.2
Oeu037042.1 Olea europaea HOM05D005634 ORTHO05D006926 2.0e-36 156.8 103 70.9
Thecc.03G204700 Theobroma cacao HOM05D005634 ORTHO05D006926 2.0e-36 156.8 95 74.7
ECA233G0867 Erigeron canadensis HOM05D005634 ORTHO05D006926 2.6e-36 156.4 113 65.5
SalBow4G1390 Salvia bowleyana HOM05D005634 ORTHO05D006926 2.6e-36 156.4 103 70.9
Duzib084G0100 Durio zibethinus HOM05D005634 ORTHO05D006926 3.5e-36 156.0 95 73.7
GSVIVG01038606001 Vitis vinifera HOM05D005634 ORTHO05D006926 3.5e-36 156.0 103 69.9
Ciclev10021946m.g Citrus clementina HOM05D005634 ORTHO05D006926 4.5e-36 155.6 94 74.5
Rhsim09G0207900 Rhododendron simsii HOM05D005634 ORTHO05D006926 4.5e-36 155.6 129 62.8
EL10Ac3g05237 Beta vulgaris HOM05D005634 ORTHO05D006926 5.9e-36 155.2 103 68.9
Medtr3g092040 Medicago truncatula HOM05D005634 ORTHO05D006926 5.9e-36 155.2 95 74.7
Oeu061008.1 Olea europaea HOM05D005634 ORTHO05D006926 5.9e-36 155.2 103 69.9
SGA_v2.0_scaffold18G08443 Striga asiatica HOM05D002361 ORTHO05D006926 5.9e-36 155.2 103 70.9
ATR0620G015 Amborella trichopoda HOM05D005634 ORTHO05D006926 7.7e-36 154.8 103 68.9
arahy.Tifrunner.gnm1.ann1.P45MK1 Arachis hypogaea HOM05D005634 ORTHO05D006926 7.7e-36 154.8 103 69.9
Glyma.14G118100 Glycine max HOM05D005634 ORTHO05D006926 7.7e-36 154.8 95 72.6
Lj1g0021546 Lotus japonicus HOM05D005634 ORTHO05D006926 7.7e-36 154.8 103 68.9
VMungo1309G1289 Vigna mungo HOM05D005634 ORTHO05D006926 7.7e-36 154.8 95 73.7
arahy.Tifrunner.gnm1.ann1.WWF9U9 Arachis hypogaea HOM05D005634 ORTHO05D006926 1.0e-35 154.5 103 69.9
Glyma.06G132600 Glycine max HOM05D005634 ORTHO05D006926 1.0e-35 154.5 95 73.7
Gohir.A08G102100 Gossypium hirsutum HOM05D005634 ORTHO05D006926 1.0e-35 154.5 95 72.6
Gohir.D08G113300 Gossypium hirsutum HOM05D005634 ORTHO05D006926 1.0e-35 154.5 95 72.6
Aqoxy5G04258 Aquilegia oxysepala HOM05D005634 ORTHO05D006926 1.3e-35 154.1 103 69.9
Sp7g25680 Schrenkiella parvula HOM05D005634 ORTHO05D006926 1.3e-35 154.1 83 85.5
CANSAT21G2451 Cannabis sativa HOM05D005634 ORTHO05D006926 1.7e-35 153.7 103 69.9
Zm00001eb319210 Zea mays HOM05D005634 ORTHO05D006926 1.7e-35 153.7 93 75.3
Ca_16737_v3 Cicer arietinum L. HOM05D005634 ORTHO05D006926 2.2e-35 153.3 95 73.7
Os09g0530000 Oryza sativa ssp. japonica HOM05D005634 ORTHO05D006926 2.2e-35 153.3 95 73.7
RcHm_v2.0_Chr1g0381981 Rosa chinensis HOM05D005634 ORTHO05D006926 2.2e-35 153.3 103 68.0
Manes.01G037500 Manihot esculenta HOM05D005634 ORTHO05D006926 2.9e-35 152.9 103 67.0
Nitab4.5_0000015g0180 Nicotiana tabacum HOM05D005634 ORTHO05D006926 2.9e-35 152.9 103 68.9
Phvul.009G048400 Phaseolus vulgaris HOM05D005634 ORTHO05D006926 2.9e-35 152.9 95 73.7
unitig_0.g1985 Utricularia gibba HOM05D005634 ORTHO05D006926 2.9e-35 152.9 103 68.9
AUR62035571 Chenopodium quinoa HOM05D005634 ORTHO05D006926 3.8e-35 152.5 103 68.0
Lalb_Chr11g0067121 Lupinus albus HOM05D005634 ORTHO05D006926 3.8e-35 152.5 103 69.9
Nn1g00367 Nelumbo nucifera HOM05D005634 ORTHO05D006926 3.8e-35 152.5 95 71.6
DCAR_014553 Daucus carota HOM05D005634 ORTHO05D006926 5.0e-35 152.1 96 69.8
Gorai.004G122200 Gossypium raimondii HOM05D005634 ORTHO05D006926 5.0e-35 152.1 94 72.3
Eucgr.K00410 Eucalyptus grandis HOM05D005634 ORTHO05D006926 6.5e-35 151.8 95 71.6
Ah.07g205160 Amaranthus hybridus HOM05D005634 ORTHO05D006926 8.5e-35 151.4 103 68.0
Potri.012G020700 Populus trichocarpa HOM05D005634 ORTHO05D006926 1.1e-34 151.0 103 67.0
COL.COLO4_16824 Corchorus olitorius HOM05D005634 ORTHO05D006926 1.5e-34 150.6 95 71.6
Nitab4.5_0001829g0010 Nicotiana tabacum HOM05D005634 ORTHO05D006926 1.5e-34 150.6 103 68.0
Peaxi162Scf00618g00219 Petunia axillaris HOM05D005634 ORTHO05D006926 1.9e-34 150.2 103 68.0
PGSC0003DMG400005464 Solanum tuberosum HOM05D005634 ORTHO05D006926 1.9e-34 150.2 103 67.0
MSTRG.27003 Avicennia marina HOM05D005634 ORTHO05D006926 3.2e-34 149.4 103 68.0
CAN.G414.9 Capsicum annuum HOM05D005634 ORTHO05D006926 5.5e-34 148.7 95 71.6
FAN01G0994 Fragaria x ananassa HOM05D005634 ORTHO05D006926 5.5e-34 148.7 113 61.9
FAN10G1744 Fragaria x ananassa HOM05D005634 ORTHO05D006926 5.5e-34 148.7 103 66.0
Sabra05G0139500 Salix brachista HOM05D005634 ORTHO05D006926 5.5e-34 148.7 138 55.1
Sabra12G0012500 Salix brachista HOM05D005634 ORTHO05D006926 5.5e-34 148.7 96 69.8
FAN03G3354 Fragaria x ananassa HOM05D005634 ORTHO05D006926 7.2e-34 148.3 103 65.0
Psat5g074680 Pisum sativum HOM05D005634 ORTHO05D006926 7.2e-34 148.3 95 71.6
BcaC01g00747 Brassica carinata HOM05D005634 ORTHO05D006926 9.4e-34 147.9 75 92.0
AUR62006058 Chenopodium quinoa HOM05D005634 ORTHO05D006926 9.4e-34 147.9 103 66.0
FvH4_7g32420 Fragaria vesca HOM05D005634 ORTHO05D006926 1.2e-33 147.5 95 69.5
Solyc06g053140.3 Solanum lycopersicum HOM05D005634 ORTHO05D006926 2.7e-33 146.4 103 67.0
Sopen06g018200 Solanum pennellii HOM05D005634 ORTHO05D006926 2.7e-33 146.4 103 67.0
PSO782G0763 Papaver somniferum HOM05D005634 ORTHO05D006926 2.3e-32 143.3 113 60.2
Lalb_Chr08g0239991 Lupinus albus HOM05D005634 ORTHO05D006926 3.0e-32 142.9 95 68.4
SEGI_37163 Sequoiadendron giganteum HOM05D005634 ORTHO05D006926 1.2e-31 141.0 113 58.4
Pp3c15_4960 Physcomitrium patens HOM05D005634 ORTHO05D006926 5.9e-28 128.6 97 58.8
Hund21024 Selenicereus undatus HOM05D005634 ORTHO05D006926 1.3e-27 127.5 92 63.0
SMO141G0293 Selaginella moellendorffii HOM05D005634 ORTHO05D006926 1.7e-27 127.1 103 55.3
AagrBONN_evm.TU.Sc2ySwM_344.430 Anthoceros agrestis HOM05D005634 ORTHO05D006926 2.2e-27 126.7 95 58.9
Mapoly0050s0021 Marchantia polymorpha HOM05D005634 ORTHO05D006926 2.2e-27 126.7 95 58.9
CBR_g3780 Chara braunii HOM05D005634 ORTHO05D006926 3.2e-26 122.9 93 60.2
TPR.G33661 Trifolium pratense HOM05D005634 ORTHO05D006926 1.7e-22 110.5 69 71.0
ClCG05G009130 Citrullus lanatus HOM05D005634 ORTHO05D006926 4.9e-22 109.0 112 53.6
A02p29530 Brassica napus HOM05D005634 ORTHO05D096861 1.5e-15 87.4 51 72.5
A05p20300 Brassica napus HOM05D005634 ORTHO05D100822 2.6e-15 86.7 51 72.5
Cre16.g650050 Chlamydomonas reinhardtii HOM05D005634 ORTHO05D006926 4.9e-14 82.4 99 40.4
Hma1.2p1_0512F.1_g169290 Hydrangea macrophylla HOM05D005634 ORTHO05D006926 2.0e-12 77.0 49 73.5
HPP92_002499 Vanilla planifolia HOM05D005634 ORTHO05D006926 4.7e-09 65.9 51 56.9
AagrBONN_evm.TU.Sc2ySwM_362.2890 Anthoceros agrestis HOM05D005634 ORTHO05D006926 5.2e-08 62.4 101 36.6
VMungo1215G1823 Vigna mungo HOM05D001256 ORTHO05D001141 1.7e-06 57.4 43 62.8
SMO169G0172 Selaginella moellendorffii HOM05D005634 ORTHO05D006926 4.9e-06 55.8 105 30.5
Atru.chr2.2474 Acer truncatum HOM05D000280 ORTHO05D000632 8.3e-06 55.1 43 60.5


User provided reference genes

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