Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
BcaC03g17841 Brassica carinata HOM05D004770 ORTHO05D005572 4.5e-29 130.6 65 100.0
BcaNung02803 Brassica carinata HOM05D004770 ORTHO05D005572 3.8e-20 100.9 68 77.9
C07p41870 Brassica napus HOM05D004770 ORTHO05D005572 3.8e-20 100.9 68 77.9
BolC7t44719H Brassica oleracea HOM05D004770 ORTHO05D005572 3.8e-20 100.9 68 77.9
BcaNung03978 Brassica carinata HOM05D004770 ORTHO05D005572 4.9e-20 100.5 68 76.5
A06p36610 Brassica napus HOM05D004770 ORTHO05D005572 4.9e-20 100.5 68 76.5
BraA06t26586Z Brassica rapa HOM05D004770 ORTHO05D005572 4.9e-20 100.5 68 76.5
Thhalv10004885m.g Eutrema salsugineum HOM05D004770 ORTHO05D005572 8.4e-20 99.8 68 76.5
Sp2g21620 Schrenkiella parvula HOM05D004770 ORTHO05D005572 1.1e-19 99.4 68 75.0
CARHR187390 Cardamine hirsuta HOM05D004770 ORTHO05D005572 4.2e-19 97.4 68 75.0
AL2G11930 Arabidopsis lyrata HOM05D004770 ORTHO05D005572 4.6e-18 94.0 68 70.6
AL2G11990 Arabidopsis lyrata HOM05D004770 ORTHO05D005572 4.6e-18 94.0 68 70.6
AT5G26110 Arabidopsis thaliana HOM05D004770 ORTHO05D005572 4.6e-18 94.0 68 72.1
Sp5g00290 Schrenkiella parvula HOM05D004770 ORTHO05D005572 4.6e-18 94.0 68 70.6
Aa31LG10G17080 Aethionema arabicum HOM05D004770 ORTHO05D005572 1.3e-17 92.4 68 70.6
Carub.0005s0602 Capsella rubella HOM05D004770 ORTHO05D005572 3.0e-17 91.3 68 69.1
THA.LOC104817561 Tarenaya hassleriana HOM05D004770 ORTHO05D005572 3.3e-16 87.8 68 64.7
Actinidia00788 Actinidia chinensis HOM05D004770 ORTHO05D005572 7.4e-16 86.7 68 61.8
CSS0005681 Camellia sinensis var. sinensis HOM05D004770 ORTHO05D005572 1.3e-15 85.9 68 61.8
Carub.0006s2388 Capsella rubella HOM05D004770 ORTHO05D005572 1.3e-15 85.9 68 67.6
vmacro02598 Vaccinium macrocarpon HOM05D004770 ORTHO05D005572 1.3e-15 85.9 68 60.3
Actinidia09114 Actinidia chinensis HOM05D004770 ORTHO05D005572 2.8e-15 84.7 68 58.8
Potri.002G049900 Populus trichocarpa HOM05D004770 ORTHO05D005572 1.1e-14 82.8 68 60.3
Sabra02G0040800 Salix brachista HOM05D004770 ORTHO05D005572 1.1e-14 82.8 68 61.8
CSS0032403 Camellia sinensis var. sinensis HOM05D004770 ORTHO05D005572 1.4e-14 82.4 68 60.3
PGR031G3940 Punica granatum HOM05D004770 ORTHO05D005572 1.4e-14 82.4 68 60.3
Rhsim13G0027500 Rhododendron simsii HOM05D004770 ORTHO05D005572 1.4e-14 82.4 67 59.7
Haze_04673 Corylus avellana HOM05D004770 ORTHO05D005572 1.8e-14 82.0 68 60.3
Potri.005G212800 Populus trichocarpa HOM05D004770 ORTHO05D005572 1.8e-14 82.0 68 61.8
Eucgr.G02085 Eucalyptus grandis HOM05D004770 ORTHO05D005572 2.4e-14 81.6 68 58.8
Oeu025750.1 Olea europaea HOM05D004770 ORTHO05D005572 2.4e-14 81.6 68 60.3
Manes.01G205200 Manihot esculenta HOM05D004770 ORTHO05D005572 3.1e-14 81.3 68 60.3
Lj3A581T22 Lonicera japonica HOM05D004770 ORTHO05D005572 4.1e-14 80.9 68 60.3
Actinidia24914 Actinidia chinensis HOM05D004770 ORTHO05D005572 5.3e-14 80.5 68 52.9
CiPaw.07G089000 Carya illinoinensis HOM05D004770 ORTHO05D005572 9.0e-14 79.7 68 57.4
COL.COLO4_09057 Corchorus olitorius HOM05D001769 ORTHO05D001695 9.0e-14 79.7 68 57.4
Duzib138G1187 Durio zibethinus HOM05D004770 ORTHO05D005572 9.0e-14 79.7 68 58.8
Sabra05G0162600 Salix brachista HOM05D004770 ORTHO05D005572 9.0e-14 79.7 68 58.8
Atru.chr5.1488 Acer truncatum HOM05D004770 ORTHO05D005572 1.5e-13 79.0 68 55.9
AUR62012543 Chenopodium quinoa HOM05D004770 ORTHO05D005572 1.5e-13 79.0 68 57.4
Lj1A49T61 Lonicera japonica HOM05D004770 ORTHO05D005572 1.5e-13 79.0 68 60.3
Migut.D00330 Erythranthe guttata HOM05D004770 ORTHO05D005572 2.0e-13 78.6 67 59.7
Glyma.18G056100 Glycine max HOM05D004770 ORTHO05D005572 2.0e-13 78.6 68 55.9
Hma1.2p1_2357F.1_g320590 Hydrangea macrophylla HOM05D004770 ORTHO05D005572 2.0e-13 78.6 68 55.9
Medtr3g465790 Medicago truncatula HOM05D004770 ORTHO05D005572 2.0e-13 78.6 67 58.2
ATR0665G226 Amborella trichopoda HOM05D004770 ORTHO05D005572 2.6e-13 78.2 68 60.3
Dinv34783 Davidia involucrata HOM05D004770 ORTHO05D005572 2.6e-13 78.2 68 57.4
Nn6g34126 Nelumbo nucifera HOM05D004770 ORTHO05D005572 2.6e-13 78.2 68 55.9
vmacro14906 Vaccinium macrocarpon HOM05D004770 ORTHO05D005572 2.6e-13 78.2 68 55.9
VMungo0720G0347 Vigna mungo HOM05D004770 ORTHO05D005572 2.6e-13 78.2 68 58.8
SGA_v2.0_scaffold1G00513 Striga asiatica HOM05D004770 ORTHO05D005572 3.4e-13 77.8 68 55.9
Thecc.01G273700 Theobroma cacao HOM05D004770 ORTHO05D005572 3.4e-13 77.8 68 57.4
TPR.G25688 Trifolium pratense HOM05D004770 ORTHO05D005572 3.4e-13 77.8 67 56.7
TWI39G0629 Tripterygium wilfordii HOM05D004770 ORTHO05D005572 3.4e-13 77.8 68 57.4
Ciclev10022091m.g Citrus clementina HOM05D004770 ORTHO05D005572 4.5e-13 77.4 68 57.4
ECA248G2232 Erigeron canadensis HOM05D004770 ORTHO05D005572 4.5e-13 77.4 68 55.9
Psat2g184920 Pisum sativum HOM05D004770 ORTHO05D005572 4.5e-13 77.4 67 56.7
QL01p010878 Quercus lobata HOM05D004770 ORTHO05D005572 4.5e-13 77.4 68 55.9
Cfa006174 Carpinus fangiana HOM05D004770 ORTHO05D005572 5.9e-13 77.0 68 57.4
Cc01_g06090 Coffea canephora HOM05D004770 ORTHO05D005572 5.9e-13 77.0 68 54.4
DCAR_012498 Daucus carota HOM05D004770 ORTHO05D005572 5.9e-13 77.0 68 58.8
SalBow7G1168 Salvia bowleyana HOM05D004770 ORTHO05D005572 5.9e-13 77.0 68 57.4
Ca_15021_v3 Cicer arietinum L. HOM05D004770 ORTHO05D005572 7.6e-13 76.6 67 56.7
Lj2g0018175 Lotus japonicus HOM05D004770 ORTHO05D005572 7.6e-13 76.6 68 57.4
Aqoxy2G03435 Aquilegia oxysepala HOM05D004770 ORTHO05D005572 1.0e-12 76.3 68 55.9
Glyma.17G044400 Glycine max HOM05D004770 ORTHO05D005572 1.0e-12 76.3 68 55.9
Lsat_1_v5_gn_5_186200 Lactuca sativa HOM05D004770 ORTHO05D005572 1.0e-12 76.3 68 54.4
Lj3g0010058 Lotus japonicus HOM05D004770 ORTHO05D005572 1.0e-12 76.3 68 57.4
Lj6g0011383 Lotus japonicus HOM05D004770 ORTHO05D005572 1.0e-12 76.3 68 57.4
Nn1g02388 Nelumbo nucifera HOM05D004770 ORTHO05D005572 1.0e-12 76.3 68 52.9
EL10Ac5g10525 Beta vulgaris HOM05D004770 ORTHO05D005572 1.3e-12 75.9 68 57.4
Lsat_1_v5_gn_3_83521 Lactuca sativa HOM05D004770 ORTHO05D005572 1.3e-12 75.9 68 54.4
CANSAT80G2828 Cannabis sativa HOM05D004770 ORTHO05D005572 1.7e-12 75.5 68 57.4
AUR62032312 Chenopodium quinoa HOM05D004770 ORTHO05D005572 1.7e-12 75.5 68 55.9
HanXRQChr08g0213371 Helianthus annuus HOM05D004770 ORTHO05D005572 1.7e-12 75.5 68 52.9
Lalb_Chr18g0051481 Lupinus albus HOM05D004770 ORTHO05D005572 1.7e-12 75.5 68 57.4
Nitab4.5_0000208g0100 Nicotiana tabacum HOM05D004770 ORTHO05D005572 1.7e-12 75.5 68 58.8
Cpa.g.sc41.63 Carica papaya HOM05D004770 ORTHO05D005572 2.2e-12 75.1 68 55.9
arahy.Tifrunner.gnm1.ann1.RIN6C8 Arachis hypogaea HOM05D004770 ORTHO05D005572 2.9e-12 74.7 68 54.4
arahy.Tifrunner.gnm1.ann1.W9SXTW Arachis hypogaea HOM05D004770 ORTHO05D005572 2.9e-12 74.7 68 54.4
arahy.Tifrunner.gnm1.ann1.YE39MU Arachis hypogaea HOM05D004770 ORTHO05D005572 2.9e-12 74.7 68 54.4
Sc05g0001180 Simmondsia chinensis HOM05D004770 ORTHO05D005572 2.9e-12 74.7 68 52.9
GSVIVG01001190001 Vitis vinifera HOM05D004770 ORTHO05D005572 2.9e-12 74.7 68 54.4
Gohir.A12G003600 Gossypium hirsutum HOM05D004770 ORTHO05D005572 5.0e-12 73.9 68 54.4
Gohir.D12G003300 Gossypium hirsutum HOM05D004770 ORTHO05D005572 5.0e-12 73.9 68 54.4
Gorai.008G003100 Gossypium raimondii HOM05D004770 ORTHO05D005572 5.0e-12 73.9 68 54.4
QL12p020786 Quercus lobata HOM05D004770 ORTHO05D005572 5.0e-12 73.9 68 52.9
ClCG03G016560 Citrullus lanatus HOM05D004770 ORTHO05D005572 6.5e-12 73.6 68 52.9
MD11G1280900 Malus domestica HOM05D004770 ORTHO05D005572 6.5e-12 73.6 70 52.9
Nitab4.5_0006132g0020 Nicotiana tabacum HOM05D004770 ORTHO05D005572 6.5e-12 73.6 68 55.9
QL01p011010 Quercus lobata HOM05D004770 ORTHO05D005572 8.4e-12 73.2 68 51.5
Nitab4.5_0000759g0280 Nicotiana tabacum HOM05D004770 ORTHO05D005572 1.1e-11 72.8 68 55.9
Phvul.007G249400 Phaseolus vulgaris HOM05D004770 ORTHO05D005572 1.4e-11 72.4 68 55.9
PGSC0003DMG400017838 Solanum tuberosum HOM05D004770 ORTHO05D005572 1.4e-11 72.4 68 55.9
TAR362G0723 Trochodendron aralioides HOM05D004770 ORTHO05D005572 1.4e-11 72.4 68 51.5
unitig_0.g135 Utricularia gibba HOM05D004770 ORTHO05D005572 1.4e-11 72.4 68 54.4
CAN.G1549.14 Capsicum annuum HOM05D004770 ORTHO05D005572 1.9e-11 72.0 68 57.4
CAN.G1549.26 Capsicum annuum HOM05D004770 ORTHO05D005572 1.9e-11 72.0 68 57.4
Peaxi162Scf00783g00122 Petunia axillaris HOM05D004770 ORTHO05D005572 1.9e-11 72.0 67 55.2
Phvul.006G075100 Phaseolus vulgaris HOM05D004770 ORTHO05D005572 1.9e-11 72.0 68 51.5
VMungo0540G0250 Vigna mungo HOM05D004770 ORTHO05D005572 1.9e-11 72.0 68 52.9
arahy.Tifrunner.gnm1.ann1.S84LE1 Arachis hypogaea HOM05D004770 ORTHO05D005572 2.5e-11 71.6 68 52.9
MBI02_g08255_MAGBIO Magnolia biondii HOM05D004770 ORTHO05D005572 2.5e-11 71.6 68 52.9
Zm00001eb222890 Zea mays HOM05D004770 ORTHO05D005572 2.5e-11 71.6 68 51.5
DCAR_002713 Daucus carota HOM05D004770 ORTHO05D005572 3.2e-11 71.2 68 52.9
Nitab4.5_0004355g0020 Nicotiana tabacum HOM05D004770 ORTHO05D005572 3.2e-11 71.2 68 54.4
SGA_v2.0_scaffold80G25747 Striga asiatica HOM05D004770 ORTHO05D005572 3.2e-11 71.2 65 55.4
FvH4_2g23150 Fragaria vesca HOM05D004770 ORTHO05D005572 7.2e-11 70.1 70 51.4
FAN20G2343 Fragaria x ananassa HOM05D004770 ORTHO05D005572 7.2e-11 70.1 70 51.4
FAN27G1754 Fragaria x ananassa HOM05D004770 ORTHO05D005572 7.2e-11 70.1 70 51.4
MELO3C015367.2 Cucumis melo HOM05D004770 ORTHO05D005572 9.3e-11 69.7 68 51.5
Migut.N02033 Erythranthe guttata HOM05D004770 ORTHO05D005572 9.3e-11 69.7 68 52.9
RcHm_v2.0_Chr6g0290401 Rosa chinensis HOM05D004770 ORTHO05D005572 9.3e-11 69.7 70 51.4
SalBow4G2779 Salvia bowleyana HOM05D004770 ORTHO05D005572 9.3e-11 69.7 68 51.5
HPP92_017651 Vanilla planifolia HOM05D004770 ORTHO05D005572 9.3e-11 69.7 68 50.0
Prupe.8G236800 Prunus persica HOM05D004770 ORTHO05D005572 1.2e-10 69.3 70 54.3
SHI22269 Sapria himalayana HOM05D004770 ORTHO05D005572 1.6e-10 68.9 68 52.9
Solyc06g084160.4 Solanum lycopersicum HOM05D004770 ORTHO05D005572 1.6e-10 68.9 68 54.4
Sopen06g035540 Solanum pennellii HOM05D004770 ORTHO05D005572 1.6e-10 68.9 68 54.4
MBI15_g39353_MAGBIO Magnolia biondii HOM05D004770 ORTHO05D005572 2.1e-10 68.6 68 50.0
PSO170G2661 Papaver somniferum HOM05D004770 ORTHO05D005572 2.7e-10 68.2 68 52.9
PGSC0003DMG400020135 Solanum tuberosum HOM05D004770 ORTHO05D005572 4.6e-10 67.4 68 52.9
PSO832G1010 Papaver somniferum HOM05D004770 ORTHO05D005572 6.1e-10 67.0 68 48.5
Hund02843 Selenicereus undatus HOM05D004770 ORTHO05D005572 6.1e-10 67.0 68 50.0
Sopen08g001150 Solanum pennellii HOM05D004770 ORTHO05D005572 6.1e-10 67.0 68 52.9
Zm00001eb432290 Zea mays HOM05D004770 ORTHO05D005572 7.9e-10 66.6 68 48.5
PSO210G1988 Papaver somniferum HOM05D004770 ORTHO05D005572 1.0e-09 66.2 68 51.5
Solyc08g005140.3 Solanum lycopersicum HOM05D004770 ORTHO05D005572 1.8e-09 65.5 68 51.5
CsaV3_1G039420 Cucumis sativus L. HOM05D004770 ORTHO05D005572 3.0e-09 64.7 68 47.1
Sed0021970 Sechium edule HOM05D004770 ORTHO05D005572 5.1e-09 63.9 67 47.8
Mapoly0133s0052 Marchantia polymorpha HOM05D004770 ORTHO05D005572 2.5e-08 61.6 68 47.1
CDE04G0604 Ceratophyllum demersum HOM05D004770 ORTHO05D005572 3.3e-08 61.2 54 51.9
AagrBONN_evm.TU.Sc2ySwM_362.2288 Anthoceros agrestis HOM05D004770 ORTHO05D005572 3.7e-07 57.8 68 44.1
Pp3c15_20330 Physcomitrium patens HOM05D004770 ORTHO05D005572 1.8e-06 55.5 68 44.1
SMO358G0317 Selaginella moellendorffii HOM05D004770 ORTHO05D005572 3.1e-06 54.7 67 43.3
Glyma.02G191000 Glycine max HOM05D004770 ORTHO05D005572 4.1e-06 54.3 55 49.1
SEGI_22603 Sequoiadendron giganteum HOM05D004770 ORTHO05D005572 5.3e-06 53.9 68 41.2
SEGI_19127 Sequoiadendron giganteum HOM05D004770 ORTHO05D005572 6.9e-06 53.5 68 41.2


User provided reference genes

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