Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
BcaC03g17704 Brassica carinata HOM05D005099 ORTHO05D006087 2.1e-94 349.0 174 100.0
C02p57110 Brassica napus HOM05D005099 ORTHO05D006087 2.1e-94 349.0 174 100.0
BolC2t11783H Brassica oleracea HOM05D005099 ORTHO05D006087 2.1e-94 349.0 174 100.0
A02p37910 Brassica napus HOM05D005099 ORTHO05D006087 1.1e-90 336.7 174 96.0
BraA02t08775Z Brassica rapa HOM05D005099 ORTHO05D006087 1.3e-88 329.7 174 94.3
BcaB07g34138 Brassica carinata HOM05D005099 ORTHO05D006087 1.5e-79 299.7 176 88.1
Sp2g19520 Schrenkiella parvula HOM05D005099 ORTHO05D006087 6.1e-65 251.1 175 77.7
BraA06t26768Z Brassica rapa HOM05D005099 ORTHO05D006087 3.9e-64 248.4 192 72.4
Thhalv10004959m.g Eutrema salsugineum HOM05D005099 ORTHO05D006087 6.7e-64 247.7 194 72.7
BcaNung02585 Brassica carinata HOM05D005099 ORTHO05D006087 1.4e-61 240.0 212 66.0
BolC7t44497H Brassica oleracea HOM05D005099 ORTHO05D006087 1.4e-61 240.0 212 66.0
BcaC06g30711 Brassica carinata HOM05D005099 ORTHO05D006087 4.1e-61 238.4 217 65.4
A06p38540 Brassica napus HOM05D005099 ORTHO05D006087 5.9e-60 234.6 215 64.2
C07p39730 Brassica napus HOM05D005099 ORTHO05D006087 6.5e-59 231.1 207 64.3
AT5G49170 Arabidopsis thaliana HOM05D005099 ORTHO05D006087 2.8e-54 215.7 178 71.3
CARHR182490 Cardamine hirsuta HOM05D005099 ORTHO05D006087 2.4e-53 212.6 185 67.0
AL8G22700 Arabidopsis lyrata HOM05D005099 ORTHO05D006087 3.1e-53 212.2 192 66.7
Sabra08G0151700 Salix brachista HOM05D005099 ORTHO05D006087 1.5e-42 176.8 194 58.8
Ciclev10006010m.g Citrus clementina HOM05D005099 ORTHO05D006087 7.2e-42 174.5 192 59.9
Thecc.04G288600 Theobroma cacao HOM05D005099 ORTHO05D006087 9.4e-42 174.1 196 57.7
CARHR081450 Cardamine hirsuta HOM05D005099 ORTHO05D006087 2.1e-41 172.9 182 56.6
Duzib151G0929 Durio zibethinus HOM05D005099 ORTHO05D006087 2.1e-41 172.9 197 57.4
Carub.0008s0899 Capsella rubella HOM05D005099 ORTHO05D006087 2.7e-41 172.6 194 56.7
Duzib212G0134 Durio zibethinus HOM05D005099 ORTHO05D006087 1.4e-40 170.2 191 57.1
THA.LOC104818909 Tarenaya hassleriana HOM05D005099 ORTHO05D006087 1.8e-40 169.9 206 53.4
Haze_01169 Corylus avellana HOM05D005099 ORTHO05D006087 3.0e-40 169.1 191 60.7
THA.LOC104827334 Tarenaya hassleriana HOM05D005099 ORTHO05D006087 1.5e-39 166.8 183 59.6
COL.COLO4_13826 Corchorus olitorius HOM05D005099 ORTHO05D006087 2.0e-39 166.4 200 56.5
Potri.008G219500 Populus trichocarpa HOM05D005099 ORTHO05D006087 2.0e-39 166.4 182 58.8
CsaV3_6G023860 Cucumis sativus L. HOM05D005099 ORTHO05D006087 3.3e-39 165.6 179 60.9
Cfa015424 Carpinus fangiana HOM05D005099 ORTHO05D006087 9.7e-39 164.1 195 56.9
Atru.chr4.2896 Acer truncatum HOM05D005099 ORTHO05D006087 1.3e-38 163.7 197 58.4
CiPaw.01G145600 Carya illinoinensis HOM05D005099 ORTHO05D006087 1.3e-38 163.7 193 56.5
Manes.03G198300 Manihot esculenta HOM05D005099 ORTHO05D006087 3.7e-38 162.2 176 58.0
CANSAT78G2455 Cannabis sativa HOM05D005099 ORTHO05D006087 6.3e-38 161.4 200 52.5
MELO3C021313.2 Cucumis melo HOM05D005099 ORTHO05D006087 6.3e-38 161.4 180 60.6
ClCG06G004980 Citrullus lanatus HOM05D005099 ORTHO05D006087 1.1e-37 160.6 177 59.3
Medtr2g435810 Medicago truncatula HOM05D005099 ORTHO05D006087 1.4e-37 160.2 191 53.9
Medtr2g436150 Medicago truncatula HOM05D005099 ORTHO05D006087 1.4e-37 160.2 191 53.9
Hma1.2p1_0804F.1_g221070 Hydrangea macrophylla HOM05D005099 ORTHO05D006087 2.4e-37 159.5 179 60.3
Phvul.009G250300 Phaseolus vulgaris HOM05D005099 ORTHO05D006087 7.0e-37 157.9 193 56.0
QL06p010333 Quercus lobata HOM05D005099 ORTHO05D006087 9.1e-37 157.5 202 55.9
Sed0019517 Sechium edule HOM05D005099 ORTHO05D006087 9.1e-37 157.5 178 60.1
AL3G17960 Arabidopsis lyrata HOM05D005099 ORTHO05D006087 2.0e-36 156.4 198 53.5
Carub.0003s0637 Capsella rubella HOM05D005099 ORTHO05D006087 2.7e-36 156.0 192 53.6
Glyma.09G042500 Glycine max HOM05D005099 ORTHO05D006087 2.7e-36 156.0 195 57.4
Dinv44353 Davidia involucrata HOM05D005099 ORTHO05D006087 4.5e-36 155.2 201 54.7
TWI73G1062 Tripterygium wilfordii HOM05D005099 ORTHO05D006087 4.5e-36 155.2 201 54.2
TAR362G0212 Trochodendron aralioides HOM05D005099 ORTHO05D006087 5.9e-36 154.8 191 55.5
Aa31LG5G17420 Aethionema arabicum HOM05D005099 ORTHO05D006087 1.0e-35 154.1 187 52.9
CiPaw.02G080200 Carya illinoinensis HOM05D005099 ORTHO05D006087 2.2e-35 152.9 194 53.1
AT3G06840 Arabidopsis thaliana HOM05D005099 ORTHO05D006087 2.9e-35 152.5 198 52.5
VMungo1309G2116 Vigna mungo HOM05D005099 ORTHO05D006087 3.8e-35 152.1 195 55.4
Glyma.15G150400 Glycine max HOM05D005099 ORTHO05D006087 5.0e-35 151.8 196 53.6
Manes.15G010800 Manihot esculenta HOM05D005099 ORTHO05D006087 5.0e-35 151.8 191 54.5
Potri.010G010600 Populus trichocarpa HOM05D005099 ORTHO05D006087 8.5e-35 151.0 195 52.8
Gorai.005G061600 Gossypium raimondii HOM05D005099 ORTHO05D006087 3.2e-34 149.1 183 55.7
Gohir.A09G237600 Gossypium hirsutum HOM05D005099 ORTHO05D006087 4.2e-34 148.7 197 52.3
Oeu033813.1 Olea europaea HOM05D005099 ORTHO05D006087 7.2e-34 147.9 188 51.1
Gohir.A02G050700 Gossypium hirsutum HOM05D005099 ORTHO05D006087 9.4e-34 147.5 182 53.3
Gohir.D02G055600 Gossypium hirsutum HOM05D005099 ORTHO05D006087 9.4e-34 147.5 183 55.2
arahy.Tifrunner.gnm1.ann1.2UKM1V Arachis hypogaea HOM05D005099 ORTHO05D006087 2.7e-33 146.0 183 55.7
Gohir.D09G238500 Gossypium hirsutum HOM05D005099 ORTHO05D006087 3.6e-33 145.6 189 53.4
arahy.Tifrunner.gnm1.ann1.2F59RJ Arachis hypogaea HOM05D005099 ORTHO05D006087 4.7e-33 145.2 183 55.7
Gorai.006G261200 Gossypium raimondii HOM05D005099 ORTHO05D006087 6.1e-33 144.8 197 52.3
CAN.G14.36 Capsicum annuum HOM05D005099 ORTHO05D006087 8.0e-33 144.4 198 50.5
Peaxi162Scf00065g00138 Petunia axillaris HOM05D005099 ORTHO05D006087 1.4e-32 143.7 192 51.6
Sabra10G0006200 Salix brachista HOM05D005099 ORTHO05D006087 1.4e-32 143.7 194 49.0
Sp3g05800 Schrenkiella parvula HOM05D005099 ORTHO05D006087 5.2e-32 141.7 196 53.1
Actinidia14282 Actinidia chinensis HOM05D005099 ORTHO05D006087 8.8e-32 141.0 178 54.5
Rhsim02G0007200 Rhododendron simsii HOM05D005099 ORTHO05D006087 8.8e-32 141.0 178 54.5
FvH4_4g18620 Fragaria vesca HOM05D005099 ORTHO05D006087 1.5e-31 140.2 196 51.0
FAN12G1484 Fragaria x ananassa HOM05D005099 ORTHO05D006087 1.5e-31 140.2 196 51.0
FAN12G1671 Fragaria x ananassa HOM05D005099 ORTHO05D006087 1.5e-31 140.2 196 51.0
RcHm_v2.0_Chr4g0423321 Rosa chinensis HOM05D005099 ORTHO05D006087 2.6e-31 139.4 197 51.3
Thhalv10021591m.g Eutrema salsugineum HOM05D005099 ORTHO05D006087 3.4e-31 139.0 200 50.0
MD16G1164800 Malus domestica HOM05D005099 ORTHO05D006087 5.7e-31 138.3 198 52.0
Prupe.1G124100 Prunus persica HOM05D005099 ORTHO05D006087 7.5e-31 137.9 191 52.4
SalBow2G2334 Salvia bowleyana HOM05D005099 ORTHO05D006087 7.5e-31 137.9 180 50.0
vmacro15214 Vaccinium macrocarpon HOM05D005099 ORTHO05D006087 7.5e-31 137.9 161 59.0
Dinv29728 Davidia involucrata HOM05D005099 ORTHO05D006087 1.7e-30 136.7 178 53.4
Cc03_g01550 Coffea canephora HOM05D005099 ORTHO05D006087 2.2e-30 136.3 185 52.4
Oeu006417.1 Olea europaea HOM05D005099 ORTHO05D006087 2.2e-30 136.3 195 50.8
SGA_v2.0_scaffold67G22601 Striga asiatica HOM05D005099 ORTHO05D006087 3.7e-30 135.6 169 52.7
FAN17G2615 Fragaria x ananassa HOM05D005099 ORTHO05D006087 1.1e-29 134.0 178 52.2
FAN07G0877 Fragaria x ananassa HOM05D005099 ORTHO05D006087 1.4e-29 133.7 191 49.7
CSS0011820 Camellia sinensis var. sinensis HOM05D005099 ORTHO05D006087 1.8e-29 133.3 177 54.2
Lj6g0002623 Lotus japonicus HOM05D005099 ORTHO05D006087 2.4e-29 132.9 191 49.2
Nitab4.5_0000695g0110 Nicotiana tabacum HOM05D005099 ORTHO05D006087 2.4e-29 132.9 196 50.5
Nitab4.5_0003767g0020 Nicotiana tabacum HOM05D005099 ORTHO05D006087 4.1e-29 132.1 196 49.5
Nn3g21536 Nelumbo nucifera HOM05D005099 ORTHO05D006087 1.6e-28 130.2 194 47.4
TAR365G0602 Trochodendron aralioides HOM05D005099 ORTHO05D006087 1.6e-28 130.2 192 51.6
CSS0049831 Camellia sinensis var. sinensis HOM05D005099 ORTHO05D006087 4.5e-28 128.6 194 50.0
Lalb_Chr20g0117371 Lupinus albus HOM05D005099 ORTHO05D006087 1.0e-27 127.5 178 47.8
MSTRG.3894 Avicennia marina HOM05D005099 ORTHO05D006087 1.3e-27 127.1 183 46.4
Migut.G00130 Erythranthe guttata HOM05D005099 ORTHO05D006087 1.7e-27 126.7 167 50.9
Psat1g155760 Pisum sativum HOM05D005099 ORTHO05D006087 1.5e-26 123.6 198 47.5
Sopen01g028090 Solanum pennellii HOM05D005099 ORTHO05D006087 2.5e-26 122.9 194 45.9
MD13G1165200 Malus domestica HOM05D005099 ORTHO05D006087 7.2e-26 121.3 191 47.6
PGR004G0666 Punica granatum HOM05D005099 ORTHO05D006087 1.6e-25 120.2 176 49.4
BcaC06g30713 Brassica carinata HOM05D005099 ORTHO05D006087 2.1e-25 119.8 78 80.8
BcaC09g47923 Brassica carinata HOM05D005099 ORTHO05D006087 2.8e-25 119.4 197 49.7
BolC1t05583H Brassica oleracea HOM05D005099 ORTHO05D006087 2.8e-25 119.4 197 49.7
Nn4g25764 Nelumbo nucifera HOM05D005099 ORTHO05D006087 2.8e-25 119.4 179 50.8
Sed0015120 Sechium edule HOM05D005099 ORTHO05D006087 3.6e-25 119.0 167 49.7
BNapus_Darmor_BZH_scaffold_117p00120 Brassica napus HOM05D005099 ORTHO05D006087 4.7e-25 118.6 198 47.0
BraA01t04411Z Brassica rapa HOM05D005099 ORTHO05D006087 4.7e-25 118.6 198 47.0
MBI18_g04556_MAGBIO Magnolia biondii HOM05D005099 ORTHO05D006087 8.0e-25 117.9 191 45.5
Cpa.g.sc50.167 Carica papaya HOM05D005099 ORTHO05D006087 1.0e-24 117.5 128 60.2
PSO407G0003 Papaver somniferum HOM05D005099 ORTHO05D006087 1.4e-24 117.1 206 41.3
SHI00249 Sapria himalayana HOM05D005099 ORTHO05D006087 1.4e-24 117.1 178 50.0
PGSC0003DMG400011309 Solanum tuberosum HOM05D005099 ORTHO05D006087 1.8e-24 116.7 193 46.1
Solyc01g066440.3 Solanum lycopersicum HOM05D005099 ORTHO05D006087 3.0e-24 115.9 194 46.4
Aqoxy2G02900 Aquilegia oxysepala HOM05D005099 ORTHO05D006087 4.0e-24 115.5 183 48.6
Ah.13g074810 Amaranthus hybridus HOM05D005099 ORTHO05D006087 8.9e-24 114.4 178 44.4
Eucgr.H03959 Eucalyptus grandis HOM05D005099 ORTHO05D006087 2.0e-23 113.2 201 45.3
AUR62015274 Chenopodium quinoa HOM05D005099 ORTHO05D006087 4.4e-23 112.1 180 45.0
HanXRQChr17g0536041 Helianthus annuus HOM05D005099 ORTHO05D006087 9.8e-23 110.9 199 41.7
Sc13g0003250 Simmondsia chinensis HOM05D005099 ORTHO05D006087 1.3e-22 110.5 179 46.9
AUR62018071 Chenopodium quinoa HOM05D005099 ORTHO05D006087 2.8e-22 109.4 182 45.6
EL10Ac3g06640 Beta vulgaris HOM05D005099 ORTHO05D006087 1.1e-21 107.5 182 46.7
Oeu053996.1 Olea europaea HOM05D005099 ORTHO05D006087 1.4e-21 107.1 194 43.8
Hund24882 Selenicereus undatus HOM05D005099 ORTHO05D006087 1.4e-21 107.1 185 42.7
ECA246G4673 Erigeron canadensis HOM05D005099 ORTHO05D006087 3.1e-21 105.9 203 44.3
ATR0693G064 Amborella trichopoda HOM05D005099 ORTHO05D006087 3.5e-20 102.4 168 41.1
PSO170G0513 Papaver somniferum HOM05D005099 ORTHO05D006087 3.5e-20 102.4 210 38.1
DCAR_002480 Daucus carota HOM05D005099 ORTHO05D006087 7.8e-20 101.3 194 39.2
HanXRQChr06g0173741 Helianthus annuus HOM05D005099 ORTHO05D006087 1.3e-19 100.5 185 41.1
DCAR_023299 Daucus carota HOM05D005099 ORTHO05D006087 1.9e-18 96.7 189 37.0
Lsat_1_v5_gn_3_21720 Lactuca sativa HOM05D005099 ORTHO05D006087 3.3e-18 95.9 197 40.6
Sc19g0005440 Simmondsia chinensis HOM05D005099 ORTHO05D006087 1.8e-16 90.1 178 38.2
arahy.Tifrunner.gnm1.ann1.H54SCY Arachis hypogaea HOM05D005099 ORTHO05D006087 5.2e-16 88.6 182 42.3
HPP92_011860 Vanilla planifolia HOM05D005099 ORTHO05D006087 2.0e-15 86.7 165 39.4
arahy.Tifrunner.gnm1.ann1.L8YWMY Arachis hypogaea HOM05D005099 ORTHO05D006087 2.6e-15 86.3 182 41.8
Nn7g36563 Nelumbo nucifera HOM05D005099 ORTHO05D006087 6.0e-12 75.1 89 51.7
Lj6P680T81 Lonicera japonica HOM05D005099 ORTHO05D006087 2.3e-11 73.2 68 63.2
Nitab4.5_0011001g0010 Nicotiana tabacum HOM05D005099 ORTHO05D006087 1.5e-10 70.5 178 34.8
Lalb_Chr15g0086051 Lupinus albus HOM05D005099 ORTHO05D006087 2.5e-10 69.7 92 51.1
MD13G1165100 Malus domestica HOM05D005099 ORTHO05D006087 2.5e-10 69.7 156 42.3
GSVIVG01035110001 Vitis vinifera HOM05D005099 ORTHO05D006087 5.6e-10 68.6 79 55.7
Sopen05g032840 Solanum pennellii HOM05D005099 ORTHO05D006087 2.8e-09 66.2 191 31.4
Nitab4.5_0001097g0130 Nicotiana tabacum HOM05D005099 ORTHO05D006087 9.8e-07 57.8 140 35.0
MBI19_g32875_MAGBIO Magnolia biondii HOM05D008031 ORTHO05D010063 4.9e-06 55.5 180 28.9


User provided reference genes

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