Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
BcaC03g17639 Brassica carinata HOM05D001603 ORTHO05D001393 3.9e-56 221.1 102 100.0
C02p56390 Brassica napus HOM05D001603 ORTHO05D001393 1.1e-53 213.0 100 99.0
BolC2t11697H Brassica oleracea HOM05D001603 ORTHO05D001393 1.1e-53 213.0 100 99.0
A02p37320 Brassica napus HOM05D001603 ORTHO05D001393 9.1e-53 209.9 102 95.1
BraA02t08718Z Brassica rapa HOM05D001603 ORTHO05D001393 9.1e-53 209.9 102 95.1
A02p37310 Brassica napus HOM05D001603 ORTHO05D001393 3.2e-50 201.4 102 91.2
BcaC03g17638 Brassica carinata HOM05D001603 ORTHO05D001393 1.4e-48 196.1 100 92.0
BraA02t08717Z Brassica rapa HOM05D001603 ORTHO05D001393 1.4e-48 196.1 100 91.0
BcaB07g30009 Brassica carinata HOM05D001603 ORTHO05D001393 2.2e-46 188.7 102 88.2
BcaB07g30008 Brassica carinata HOM05D001603 ORTHO05D001393 2.9e-43 178.3 102 83.3
A02p37330 Brassica napus HOM05D001603 ORTHO05D001393 5.2e-40 167.5 103 76.7
BraA02t08719Z Brassica rapa HOM05D001603 ORTHO05D001393 5.2e-40 167.5 103 76.7
BcaB07g30007 Brassica carinata HOM05D001603 ORTHO05D001393 6.3e-38 160.6 101 72.3
BcaC03g17637 Brassica carinata HOM05D001603 ORTHO05D001393 8.2e-38 160.2 101 73.3
C02p56360 Brassica napus HOM05D001603 ORTHO05D001393 4.1e-37 157.9 101 73.3
BolC2t11693H Brassica oleracea HOM05D001603 ORTHO05D001393 4.1e-37 157.9 101 73.3
BraA02t08716Z Brassica rapa HOM05D001603 ORTHO05D001393 9.1e-37 156.8 101 72.3
A02p37300 Brassica napus HOM05D001603 ORTHO05D001393 7.7e-36 153.7 101 71.3
BcaC06g30819 Brassica carinata HOM05D001603 ORTHO05D001393 5.0e-35 151.0 101 66.3
Thhalv10005180m.g Eutrema salsugineum HOM05D001603 ORTHO05D001393 3.2e-34 148.3 103 67.0
BcaC03g17640 Brassica carinata HOM05D001603 ORTHO05D001393 6.8e-32 140.6 88 73.9
Carub.0008s0778 Capsella rubella HOM05D001603 ORTHO05D001393 9.5e-26 120.2 112 54.5
AT5G48210 Arabidopsis thaliana HOM05D001603 ORTHO05D001393 8.0e-25 117.1 103 56.3
CARHR184130 Cardamine hirsuta HOM05D001603 ORTHO05D001393 4.0e-24 114.8 104 56.7
AL8G20900 Arabidopsis lyrata HOM05D001603 ORTHO05D001393 1.2e-15 86.7 72 61.1
CARHR042770 Cardamine hirsuta HOM05D001603 ORTHO05D001393 1.1e-13 80.1 111 42.3
AT5G42895 Arabidopsis thaliana HOM05D001603 ORTHO05D001393 1.4e-13 79.7 112 42.0
AT3G42565 Arabidopsis thaliana HOM05D001603 ORTHO05D001393 4.1e-13 78.2 108 42.6
AT5G36350 Arabidopsis thaliana HOM05D001603 ORTHO05D001393 4.1e-13 78.2 108 42.6
AT5G36360 Arabidopsis thaliana HOM05D001603 ORTHO05D001393 4.1e-13 78.2 108 42.6
AT5G36380 Arabidopsis thaliana HOM05D001603 ORTHO05D001393 4.1e-13 78.2 108 42.6
AT5G36390 Arabidopsis thaliana HOM05D001603 ORTHO05D001393 4.1e-13 78.2 108 42.6
AT5G36400 Arabidopsis thaliana HOM05D001603 ORTHO05D001393 4.1e-13 78.2 108 42.6
AT5G36410 Arabidopsis thaliana HOM05D001603 ORTHO05D001393 4.1e-13 78.2 108 42.6
AT5G36420 Arabidopsis thaliana HOM05D001603 ORTHO05D001393 4.1e-13 78.2 108 42.6
AT5G36430 Arabidopsis thaliana HOM05D001603 ORTHO05D001393 4.1e-13 78.2 108 42.6
AT5G36440 Arabidopsis thaliana HOM05D001603 ORTHO05D001393 4.1e-13 78.2 108 42.6
AT5G36450 Arabidopsis thaliana HOM05D001603 ORTHO05D001393 4.1e-13 78.2 108 42.6
AT5G36460 Arabidopsis thaliana HOM05D001603 ORTHO05D001393 4.1e-13 78.2 108 42.6
AT5G36470 Arabidopsis thaliana HOM05D001603 ORTHO05D001393 4.1e-13 78.2 108 42.6
AT5G36480 Arabidopsis thaliana HOM05D001603 ORTHO05D001393 4.1e-13 78.2 108 42.6
AT5G36520 Arabidopsis thaliana HOM05D001603 ORTHO05D001393 4.1e-13 78.2 108 42.6
AT5G36490 Arabidopsis thaliana HOM05D001603 ORTHO05D001393 5.4e-13 77.8 108 42.6
AT5G36550 Arabidopsis thaliana HOM05D001603 ORTHO05D001393 5.4e-13 77.8 108 42.6
AT4G09545 Arabidopsis thaliana HOM05D001603 ORTHO05D001393 7.0e-13 77.4 112 42.0
AT5G36370 Arabidopsis thaliana HOM05D001603 ORTHO05D001393 7.0e-13 77.4 108 42.6
AT5G36500 Arabidopsis thaliana HOM05D001603 ORTHO05D001393 7.0e-13 77.4 108 42.6
AT5G36540 Arabidopsis thaliana HOM05D001603 ORTHO05D001393 7.0e-13 77.4 108 42.6
CARHR181490 Cardamine hirsuta HOM05D001603 ORTHO05D001393 7.0e-13 77.4 105 40.0
BcaC01g06072 Brassica carinata HOM05D001603 ORTHO05D001393 9.2e-13 77.0 78 47.4
BolC3t14309H Brassica oleracea HOM05D001603 ORTHO05D001393 9.2e-13 77.0 78 47.4
C03p19220 Brassica napus HOM05D001603 ORTHO05D001393 1.6e-12 76.3 78 47.4
Sp1g35035 Schrenkiella parvula HOM05D001603 ORTHO05D001393 2.0e-12 75.9 115 36.5
AT5G36658 Arabidopsis thaliana HOM05D001603 ORTHO05D001393 3.5e-12 75.1 108 41.7
AT5G36661 Arabidopsis thaliana HOM05D001603 ORTHO05D001393 3.5e-12 75.1 108 41.7
AT5G36738 Arabidopsis thaliana HOM05D001603 ORTHO05D001393 3.5e-12 75.1 108 41.7
A03p16340 Brassica napus HOM05D001603 ORTHO05D001393 3.5e-12 75.1 78 46.2
BraA03t10924Z Brassica rapa HOM05D001603 ORTHO05D001393 3.5e-12 75.1 78 46.2
A03p16350 Brassica napus HOM05D001603 ORTHO05D001393 7.8e-12 73.9 123 35.0
AT5G36657 Arabidopsis thaliana HOM05D001603 ORTHO05D001393 3.0e-11 72.0 76 47.4
RcHm_v2.0_Chr2g0087131 Rosa chinensis HOM05D001603 ORTHO05D001393 3.0e-11 72.0 86 43.0
BcaC01g06071 Brassica carinata HOM05D001603 ORTHO05D001393 3.9e-11 71.6 78 43.6
C03p19230 Brassica napus HOM05D001603 ORTHO05D001393 3.9e-11 71.6 78 43.6
A08p06940 Brassica napus HOM05D001603 ORTHO05D001393 5.0e-11 71.2 108 38.9
BcaC07g37175 Brassica carinata HOM05D001603 ORTHO05D001393 6.6e-11 70.9 102 41.2
CSS0032619 Camellia sinensis var. sinensis HOM05D001603 ORTHO05D001393 6.6e-11 70.9 70 40.0
AT5G36310 Arabidopsis thaliana HOM05D001603 ORTHO05D001393 8.6e-11 70.5 108 40.7
AT5G36340 Arabidopsis thaliana HOM05D001603 ORTHO05D001393 8.6e-11 70.5 108 40.7
A08p05250 Brassica napus HOM05D001603 ORTHO05D001393 8.6e-11 70.5 111 38.7
AL8G25360 Arabidopsis lyrata HOM05D001603 ORTHO05D001393 1.1e-10 70.1 121 34.7
TWI34G1934 Tripterygium wilfordii HOM05D001603 ORTHO05D001393 1.1e-10 70.1 99 36.4
Carub.0008s1404 Capsella rubella HOM05D001603 ORTHO05D001393 1.9e-10 69.3 77 41.6
AT5G36330 Arabidopsis thaliana HOM05D001603 ORTHO05D001393 2.5e-10 68.9 108 39.8
BcaC01g06102 Brassica carinata HOM05D001603 ORTHO05D001393 2.5e-10 68.9 135 32.6
BcaC01g06105 Brassica carinata HOM05D001603 ORTHO05D001393 2.5e-10 68.9 135 32.6
BcaC07g37178 Brassica carinata HOM05D001603 ORTHO05D001393 2.5e-10 68.9 103 41.7
AL5G28100 Arabidopsis lyrata HOM05D001603 ORTHO05D001393 3.3e-10 68.6 101 36.6
BcaC07g37177 Brassica carinata HOM05D001603 ORTHO05D001393 3.3e-10 68.6 76 47.4
BcaC07g37179 Brassica carinata HOM05D001603 ORTHO05D001393 3.3e-10 68.6 76 47.4
Thecc.09G136800 Theobroma cacao HOM05D001603 ORTHO05D001393 3.3e-10 68.6 106 38.7
A08p05260 Brassica napus HOM05D001603 ORTHO05D001393 4.3e-10 68.2 111 37.8
C08p05610 Brassica napus HOM05D001603 ORTHO05D001393 4.3e-10 68.2 76 47.4
Carub.0008s1450 Capsella rubella HOM05D001603 ORTHO05D001393 4.3e-10 68.2 82 40.2
CARHR016560 Cardamine hirsuta HOM05D001603 ORTHO05D001393 4.3e-10 68.2 111 36.9
THA.LOC104809119 Tarenaya hassleriana HOM05D001603 ORTHO05D001393 4.3e-10 68.2 88 38.6
BcaC07g37174 Brassica carinata HOM05D001603 ORTHO05D001393 5.6e-10 67.8 77 45.5
A08p06930 Brassica napus HOM05D001603 ORTHO05D001393 5.6e-10 67.8 76 46.1
C08p05570 Brassica napus HOM05D001603 ORTHO05D001393 5.6e-10 67.8 76 47.4
A08p05270 Brassica napus HOM05D001603 ORTHO05D001393 7.3e-10 67.4 76 46.1
C08p05590 Brassica napus HOM05D001603 ORTHO05D001393 7.3e-10 67.4 76 47.4
Thhalv10005657m.g Eutrema salsugineum HOM05D001603 ORTHO05D001393 7.3e-10 67.4 93 37.6
Aa31sc88G60 Aethionema arabicum HOM05D001603 ORTHO05D001393 9.5e-10 67.0 98 40.8
A08p06920 Brassica napus HOM05D001603 ORTHO05D001393 9.5e-10 67.0 80 43.8
CARHR187420 Cardamine hirsuta HOM05D001603 ORTHO05D001393 9.5e-10 67.0 108 37.0
THA.LOC104807824 Tarenaya hassleriana HOM05D001603 ORTHO05D001393 9.5e-10 67.0 99 37.4
A08p05300 Brassica napus HOM05D001603 ORTHO05D001393 1.2e-09 66.6 75 46.7
A08p05310 Brassica napus HOM05D001603 ORTHO05D001393 1.2e-09 66.6 77 44.2
Carub.0008s1435 Capsella rubella HOM05D001603 ORTHO05D001393 1.2e-09 66.6 82 40.2
Gohir.D13G021050 Gossypium hirsutum HOM05D001603 ORTHO05D001393 1.2e-09 66.6 105 36.2
THA.LOC104801737 Tarenaya hassleriana HOM05D001603 ORTHO05D001393 1.2e-09 66.6 96 38.5
THA.LOC104807823 Tarenaya hassleriana HOM05D001603 ORTHO05D001393 1.2e-09 66.6 85 40.0
THA.LOC104811298 Tarenaya hassleriana HOM05D001603 ORTHO05D001393 1.6e-09 66.2 72 45.8
BcaC07g37231 Brassica carinata HOM05D001603 ORTHO05D001393 2.1e-09 65.9 76 46.1
Gohir.A13G020450 Gossypium hirsutum HOM05D001603 ORTHO05D001393 2.1e-09 65.9 105 36.2
A08p06950 Brassica napus HOM05D001603 ORTHO05D001393 2.8e-09 65.5 111 36.9
A08p06960 Brassica napus HOM05D001603 ORTHO05D001393 2.8e-09 65.5 79 45.6
CARHR274670 Cardamine hirsuta HOM05D001603 ORTHO05D001393 2.8e-09 65.5 106 39.6
Gorai.N025500 Gossypium raimondii HOM05D001603 ORTHO05D001393 2.8e-09 65.5 105 36.2
Lj7A438G59 Lonicera japonica HOM05D001603 ORTHO05D001393 2.8e-09 65.5 98 37.8
BcaC07g37176 Brassica carinata HOM05D001603 ORTHO05D001393 3.6e-09 65.1 103 38.8
Gorai.004G109000 Gossypium raimondii HOM05D001603 ORTHO05D001393 3.6e-09 65.1 103 39.8
AT5G54062 Arabidopsis thaliana HOM05D001603 ORTHO05D001393 4.7e-09 64.7 73 42.5
Peaxi162Scf01694g00006 Petunia axillaris HOM05D001603 ORTHO05D001393 4.7e-09 64.7 91 35.2
Lj7C438T17 Lonicera japonica HOM05D001603 ORTHO05D001393 6.2e-09 64.3 94 37.2
THA.LOC104807891 Tarenaya hassleriana HOM05D001603 ORTHO05D001393 6.2e-09 64.3 99 36.4
Thecc.09G136900 Theobroma cacao HOM05D001603 ORTHO05D001393 6.2e-09 64.3 113 33.6
Thecc.09G137000 Theobroma cacao HOM05D001603 ORTHO05D001393 6.2e-09 64.3 95 34.7
AT3G48675 Arabidopsis thaliana HOM05D001603 ORTHO05D001393 8.0e-09 63.9 86 37.2
AT5G36662 Arabidopsis thaliana HOM05D001603 ORTHO05D001393 8.0e-09 63.9 108 38.0
AT5G36739 Arabidopsis thaliana HOM05D001603 ORTHO05D001393 8.0e-09 63.9 108 38.0
Sc18g0000140 Simmondsia chinensis HOM05D001603 ORTHO05D001393 1.1e-08 63.5 92 37.0
Atru.chr11.1201 Acer truncatum HOM05D001603 ORTHO05D001393 1.4e-08 63.2 93 36.6
Gohir.D08G101050 Gossypium hirsutum HOM05D001603 ORTHO05D001393 1.4e-08 63.2 103 39.8
THA.LOC104809637 Tarenaya hassleriana HOM05D001603 ORTHO05D001393 1.4e-08 63.2 67 43.3
AT5G51105 Arabidopsis thaliana HOM05D001603 ORTHO05D001393 1.8e-08 62.8 106 33.0
A08p05280 Brassica napus HOM05D001603 ORTHO05D001393 1.8e-08 62.8 102 37.3
A08p05320 Brassica napus HOM05D001603 ORTHO05D001393 1.8e-08 62.8 67 47.8
C08p05580 Brassica napus HOM05D001603 ORTHO05D001393 1.8e-08 62.8 76 44.7
Gorai.004G109100 Gossypium raimondii HOM05D001603 ORTHO05D001393 1.8e-08 62.8 62 45.2
Lsat_1_v5_gn_8_62881 Lactuca sativa HOM05D001603 ORTHO05D001393 1.8e-08 62.8 77 45.5
CARHR154350 Cardamine hirsuta HOM05D001603 ORTHO05D001393 2.3e-08 62.4 63 42.9
CiPaw.03G252200 Carya illinoinensis HOM05D001603 ORTHO05D001393 2.3e-08 62.4 62 41.9
Atru.chr7.1960 Acer truncatum HOM05D001603 ORTHO05D001393 4.0e-08 61.6 70 37.1
C08p05560 Brassica napus HOM05D001603 ORTHO05D001393 4.0e-08 61.6 76 44.7
THA.LOC104811131 Tarenaya hassleriana HOM05D001603 ORTHO05D001393 4.0e-08 61.6 65 43.1
THA.LOC104811299 Tarenaya hassleriana HOM05D001603 ORTHO05D001393 4.0e-08 61.6 65 43.1
Atru.chr7.1961 Acer truncatum HOM05D001603 ORTHO05D001393 5.2e-08 61.2 70 37.1
PGSC0003DMG400004472 Solanum tuberosum HOM05D001603 ORTHO05D001393 5.2e-08 61.2 68 38.2
A08p05290 Brassica napus HOM05D001603 ORTHO05D001393 6.8e-08 60.8 67 46.3
Atru.chr11.1514 Acer truncatum HOM05D001603 ORTHO05D001393 8.9e-08 60.5 102 32.4
Atru.chr7.2004 Acer truncatum HOM05D001603 ORTHO05D001393 8.9e-08 60.5 70 37.1
CARHR256980 Cardamine hirsuta HOM05D001603 ORTHO05D001393 8.9e-08 60.5 68 41.2
COL.COLO4_33371 Corchorus olitorius HOM05D001603 ORTHO05D001393 8.9e-08 60.5 71 36.6
Gohir.D08G101100 Gossypium hirsutum HOM05D001603 ORTHO05D001393 8.9e-08 60.5 62 43.5
AT5G36659 Arabidopsis thaliana HOM05D001603 ORTHO05D001393 1.2e-07 60.1 94 40.4
Duzib187G1932 Durio zibethinus HOM05D001603 ORTHO05D001393 1.5e-07 59.7 107 34.6
TWI63G0036 Tripterygium wilfordii HOM05D001603 ORTHO05D001393 3.4e-07 58.5 68 39.7
TWI34G1530 Tripterygium wilfordii HOM05D001603 ORTHO05D001393 4.4e-07 58.2 61 39.3
Gorai.013G023500 Gossypium raimondii HOM05D001603 ORTHO05D001393 5.8e-07 57.8 77 39.0
CAN.G184.41 Capsicum annuum HOM05D001603 ORTHO05D001393 7.5e-07 57.4 80 32.5
CARHR274650 Cardamine hirsuta HOM05D001603 ORTHO05D001393 7.5e-07 57.4 61 44.3
CAN.G184.54 Capsicum annuum HOM05D001603 ORTHO05D001393 9.8e-07 57.0 68 33.8
Thecc.10G154400 Theobroma cacao HOM05D041229 ORTHO05D034836 9.8e-07 57.0 62 40.3
Glyma.05G187500 Glycine max HOM05D001595 ORTHO05D001573 1.3e-06 56.6 74 37.8
SGA_v2.0_scaffold24G10427 Striga asiatica HOM05D001603 ORTHO05D001393 3.7e-06 55.1 61 36.1
Glyma.08G145800 Glycine max HOM05D001595 ORTHO05D001573 6.4e-06 54.3 74 36.5
PSO384G2124 Papaver somniferum HOM05D001603 ORTHO05D001393 8.3e-06 53.9 63 36.5


User provided reference genes

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