Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
BcaC03g17628 Brassica carinata HOM05D002451 ORTHO05D005601 0.0e+00 2162.1 1125 100.0
BolC2t11683H Brassica oleracea HOM05D002451 ORTHO05D005601 0.0e+00 2157.5 1126 99.9
C02p56250 Brassica napus HOM05D002451 ORTHO05D005601 0.0e+00 2113.2 1126 98.2
BraA02t08709Z Brassica rapa HOM05D002451 ORTHO05D005601 0.0e+00 2004.2 1135 92.4
A02p37220 Brassica napus HOM05D002451 ORTHO05D005601 0.0e+00 1994.2 1135 92.3
BcaB07g30001 Brassica carinata HOM05D002451 ORTHO05D005601 0.0e+00 1905.6 1123 88.9
Thhalv10003552m.g Eutrema salsugineum HOM05D002451 ORTHO05D005601 0.0e+00 1775.0 1119 81.9
Sp2g18530 Schrenkiella parvula HOM05D002451 ORTHO05D005601 0.0e+00 1766.9 1135 81.2
AL8G20730 Arabidopsis lyrata HOM05D002451 ORTHO05D005601 0.0e+00 1709.5 1135 78.3
Carub.0008s0769 Capsella rubella HOM05D002451 ORTHO05D005601 0.0e+00 1701.8 1129 77.9
AT5G48120 Arabidopsis thaliana HOM05D002451 ORTHO05D005601 0.0e+00 1671.0 1135 77.1
CARHR259290 Cardamine hirsuta HOM05D002451 ORTHO05D005601 0.0e+00 1631.7 1132 75.8
Aa31LG11G5160 Aethionema arabicum HOM05D002451 ORTHO05D005601 0.0e+00 1521.1 1129 69.7
THA.LOC104809828 Tarenaya hassleriana HOM05D002451 ORTHO05D005601 0.0e+00 1329.7 1137 61.7
Ciclev10024743m.g Citrus clementina HOM05D002451 ORTHO05D005601 4.2e-308 1061.6 1158 50.3
CiPaw.01G231400 Carya illinoinensis HOM05D002451 ORTHO05D005601 9.3e-308 1060.4 1159 51.3
GSVIVG01016980001 Vitis vinifera HOM05D002451 ORTHO05D005601 1.2e-307 1060.1 1147 50.5
QL05p020031 Quercus lobata HOM05D002451 ORTHO05D005601 7.4e-305 1050.8 1227 49.1
Atru.chr1.3524 Acer truncatum HOM05D002451 ORTHO05D005601 9.6e-305 1050.4 1151 51.2
Duzib192G0210 Durio zibethinus HOM05D002451 ORTHO05D005601 9.0e-303 1043.9 1150 50.3
Dinv37977 Davidia involucrata HOM05D002451 ORTHO05D005601 7.9e-299 1030.8 1157 49.3
Cfa003647 Carpinus fangiana HOM05D002451 ORTHO05D005601 1.3e-298 1030.0 1144 49.6
Thecc.06G100100 Theobroma cacao HOM05D002451 ORTHO05D005601 2.5e-297 1025.8 1156 49.5
Gorai.010G230600 Gossypium raimondii HOM05D002451 ORTHO05D005601 5.8e-294 1014.6 1156 48.9
Gohir.D06G197800 Gossypium hirsutum HOM05D002451 ORTHO05D005601 7.1e-292 1007.7 1154 48.7
Manes.11G033500 Manihot esculenta HOM05D002451 ORTHO05D005601 7.1e-292 1007.7 1157 48.6
Prupe.3G059000 Prunus persica HOM05D002451 ORTHO05D005601 2.7e-291 1005.7 1160 48.9
Potri.003G048800 Populus trichocarpa HOM05D002451 ORTHO05D005601 2.3e-290 1002.7 1148 49.3
Haze_15848 Corylus avellana HOM05D002451 ORTHO05D005601 1.1e-289 1000.3 1162 48.5
COL.COLO4_30513 Corchorus olitorius HOM05D002451 ORTHO05D005601 5.7e-289 998.0 1136 48.0
TAR636G2911 Trochodendron aralioides HOM05D002451 ORTHO05D005601 1.4e-284 983.4 1150 47.6
MD09G1202800 Malus domestica HOM05D002451 ORTHO05D005601 3.6e-283 978.8 1148 47.7
Nn8g39071 Nelumbo nucifera HOM05D002451 ORTHO05D005601 2.3e-282 976.1 1161 46.5
RcHm_v2.0_Chr2g0140541 Rosa chinensis HOM05D002451 ORTHO05D005601 1.1e-281 973.8 1149 48.3
TWI12G0408 Tripterygium wilfordii HOM05D002451 ORTHO05D005601 6.9e-279 964.5 1152 47.8
Lj9C513G3 Lonicera japonica HOM05D002451 ORTHO05D005601 9.1e-279 964.1 1145 46.2
Sed0021872 Sechium edule HOM05D002451 ORTHO05D005601 1.7e-277 959.9 1155 47.0
CANSAT56G2471 Cannabis sativa HOM05D002451 ORTHO05D005601 8.5e-277 957.6 1139 45.9
CsaV3_7G035270 Cucumis sativus L. HOM05D002451 ORTHO05D005601 5.1e-274 948.3 1156 46.3
FAN05G4332 Fragaria x ananassa HOM05D002451 ORTHO05D005601 9.1e-271 937.6 1148 47.1
Ca_01165_v3 Cicer arietinum L. HOM05D002451 ORTHO05D005601 1.7e-269 933.3 1156 46.7
Rhsim08G0227600 Rhododendron simsii HOM05D002451 ORTHO05D005601 2.2e-269 932.9 1208 45.9
Gohir.A06G189400 Gossypium hirsutum HOM05D002451 ORTHO05D005601 9.4e-268 927.5 1093 47.4
Phvul.005G166100 Phaseolus vulgaris HOM05D002451 ORTHO05D005601 8.0e-267 924.5 1155 46.0
Lalb_Chr14g0373021 Lupinus albus HOM05D002451 ORTHO05D005601 2.3e-266 922.9 1142 46.2
Glyma.13G354600 Glycine max HOM05D002451 ORTHO05D005601 3.9e-266 922.2 1144 46.2
Eucgr.F03079 Eucalyptus grandis HOM05D002451 ORTHO05D005601 4.8e-264 915.2 1098 46.4
TPR.G6596 Trifolium pratense HOM05D002451 ORTHO05D005601 4.8e-264 915.2 1156 45.8
Lj1g0009957 Lotus japonicus HOM05D002451 ORTHO05D005601 4.1e-263 912.1 1153 46.2
PGR102G3176 Punica granatum HOM05D002451 ORTHO05D005601 5.0e-261 905.2 1137 45.1
Actinidia32098 Actinidia chinensis HOM05D002451 ORTHO05D005601 1.9e-260 903.3 1155 45.8
Medtr2g100870 Medicago truncatula HOM05D002451 ORTHO05D005601 2.5e-260 902.9 1157 44.9
MELO3C024437.2 Cucumis melo HOM05D002451 ORTHO05D005601 2.1e-259 899.8 1113 45.8
FAN02G1073 Fragaria x ananassa HOM05D002451 ORTHO05D005601 6.8e-258 894.8 1124 46.3
Sopen03g039860 Solanum pennellii HOM05D002451 ORTHO05D005601 1.5e-257 893.6 1139 43.6
Solyc03g121030.2 Solanum lycopersicum HOM05D002451 ORTHO05D005601 1.8e-255 886.7 1139 43.4
PSO063G3373 Papaver somniferum HOM05D002451 ORTHO05D005601 1.2e-254 884.0 1147 44.1
Glyma.15G019600 Glycine max HOM05D002451 ORTHO05D005601 2.7e-254 882.9 1147 44.3
Aqoxy7G01406 Aquilegia oxysepala HOM05D002451 ORTHO05D005601 2.5e-252 876.3 1149 43.0
arahy.Tifrunner.gnm1.ann1.65X03I Arachis hypogaea HOM05D002451 ORTHO05D005601 4.2e-252 875.5 1132 44.3
arahy.Tifrunner.gnm1.ann1.T566S8 Arachis hypogaea HOM05D002451 ORTHO05D005601 7.2e-252 874.8 1131 44.4
PSO832G2466 Papaver somniferum HOM05D002451 ORTHO05D005601 1.2e-249 867.5 1147 43.3
Cc04_g02550 Coffea canephora HOM05D002451 ORTHO05D005601 1.4e-247 860.5 1161 42.7
Sc10g0007590 Simmondsia chinensis HOM05D002451 ORTHO05D005601 1.6e-246 857.1 1152 43.1
Medtr5g085950 Medicago truncatula HOM05D002451 ORTHO05D005601 2.7e-246 856.3 1156 43.6
AUR62031915 Chenopodium quinoa HOM05D002451 ORTHO05D005601 1.5e-244 850.5 1143 41.2
MSTRG.11027 Avicennia marina HOM05D002451 ORTHO05D005601 1.9e-244 850.1 1149 42.9
TWI75G1452 Tripterygium wilfordii HOM05D002451 ORTHO05D005601 4.2e-244 849.0 1150 44.9
Migut.I00897 Erythranthe guttata HOM05D002451 ORTHO05D005601 9.5e-244 847.8 1140 43.2
FvH4_6g32400 Fragaria vesca HOM05D002451 ORTHO05D005601 1.5e-241 840.5 1064 46.6
AUR62022206 Chenopodium quinoa HOM05D002451 ORTHO05D005601 1.3e-240 837.4 1127 42.0
MBI04_g20307_MAGBIO Magnolia biondii HOM05D002451 ORTHO05D005601 5.6e-236 822.0 1231 41.2
ECA232G2699 Erigeron canadensis HOM05D002451 ORTHO05D005601 8.9e-234 814.7 1132 41.3
Lsat_1_v5_gn_4_97440 Lactuca sativa HOM05D002451 ORTHO05D005601 2.5e-228 796.6 1119 39.9
Psat5g295800 Pisum sativum HOM05D002451 ORTHO05D005601 2.5e-228 796.6 1095 43.6
vmacro18852 Vaccinium macrocarpon HOM05D002451 ORTHO05D005601 1.8e-226 790.4 1003 46.0
ATR0705G185 Amborella trichopoda HOM05D002451 ORTHO05D005601 5.2e-226 788.9 1175 40.6
Hund07601 Selenicereus undatus HOM05D002451 ORTHO05D005601 6.8e-226 788.5 1139 41.4
HanXRQChr09g0276251 Helianthus annuus HOM05D002451 ORTHO05D005601 8.9e-226 788.1 1125 40.4
FAN09G4229 Fragaria x ananassa HOM05D002451 ORTHO05D005601 3.1e-218 763.1 1040 45.1
CAN.G1143.14 Capsicum annuum HOM05D002451 ORTHO05D005601 4.1e-215 752.7 1028 41.6
Ah.01g022090 Amaranthus hybridus HOM05D002451 ORTHO05D005601 3.3e-212 743.0 1097 40.8
Sabra03G0029300 Salix brachista HOM05D002451 ORTHO05D005601 6.2e-211 738.8 1095 41.7
Oeu017119.1 Olea europaea HOM05D002451 ORTHO05D005601 1.4e-210 737.6 1068 41.3
Nitab4.5_0006902g0020 Nicotiana tabacum HOM05D002451 ORTHO05D005601 1.2e-206 724.5 1120 38.8
Aa31sc1931G10 Aethionema arabicum HOM05D002451 ORTHO05D005601 5.1e-205 719.2 523 68.8
SGA_v2.0_scaffold66G22528 Striga asiatica HOM05D002451 ORTHO05D005601 1.1e-204 718.0 1147 38.6
HPP92_007690 Vanilla planifolia HOM05D002451 ORTHO05D005601 1.9e-204 717.2 1155 38.4
FAN14G4820 Fragaria x ananassa HOM05D002451 ORTHO05D005601 3.3e-196 689.9 949 43.7
Nitab4.5_0006467g0020 Nicotiana tabacum HOM05D002451 ORTHO05D005601 1.4e-194 684.5 1131 37.8
EL10Ac9g21204 Beta vulgaris HOM05D002451 ORTHO05D005601 4.5e-193 679.5 1060 38.4
Zm00001eb301230 Zea mays HOM05D002451 ORTHO05D005601 2.7e-190 670.2 1138 36.5
ClCG09G000210 Citrullus lanatus HOM05D002451 ORTHO05D005601 1.8e-189 667.5 932 43.3
Aa31LG11G5130 Aethionema arabicum HOM05D002451 ORTHO05D005601 2.7e-174 617.1 428 75.0
DCAR_023080 Daucus carota HOM05D002451 ORTHO05D005601 6.1e-174 615.9 907 40.9
Peaxi162Scf00038g01032 Petunia axillaris HOM05D002451 ORTHO05D005601 6.7e-165 585.9 946 37.6
SEGI_26537 Sequoiadendron giganteum HOM05D002451 ORTHO05D005601 1.3e-144 518.5 1052 34.8
Pp3c9_4950 Physcomitrium patens HOM05D002451 ORTHO05D005601 2.0e-137 494.6 1178 31.7
Aa31LG9G10330 Aethionema arabicum HOM05D002451 ORTHO05D005601 1.4e-117 428.7 340 68.8
Mapoly0036s0119 Marchantia polymorpha HOM05D002451 ORTHO05D005601 2.2e-115 421.4 1190 29.0
Os07g0177100 Oryza sativa ssp. japonica HOM05D002451 ORTHO05D005601 3.9e-104 384.0 654 37.2
SMO111G0185 Selaginella moellendorffii HOM05D002451 ORTHO05D005601 5.8e-100 370.2 1118 28.4
Cpa.g.sc25.8 Carica papaya HOM05D002451 ORTHO05D005601 1.7e-96 358.6 502 43.8
CSS0036196 Camellia sinensis var. sinensis HOM05D002451 ORTHO05D005601 4.7e-94 350.5 441 46.3
TAR624G0206 Trochodendron aralioides HOM05D002451 ORTHO05D005601 4.7e-94 350.5 435 44.8
unitig_88.g27601 Utricularia gibba HOM05D002451 ORTHO05D005601 8.1e-94 349.7 695 33.8
CSS0044368 Camellia sinensis var. sinensis HOM05D002451 ORTHO05D005601 1.2e-81 309.3 335 48.7
CDE05G1834 Ceratophyllum demersum HOM05D002451 ORTHO05D005601 4.0e-77 294.3 430 45.3
ClCG09G000220 Citrullus lanatus HOM05D002451 ORTHO05D005601 8.4e-75 286.6 232 58.6
CDE05G2530 Ceratophyllum demersum HOM05D002451 ORTHO05D005601 2.4e-61 241.9 232 51.3
CBR_g26190 Chara braunii HOM05D002451 ORTHO05D005601 1.7e-59 235.7 1297 23.5
Cpa.g.sc25.5 Carica papaya HOM05D002451 ORTHO05D005601 1.8e-56 225.7 265 46.8
TAR624G0246 Trochodendron aralioides HOM05D002451 ORTHO05D005601 5.9e-52 210.7 205 52.2
Cpa.g.sc25.4 Carica papaya HOM05D002451 ORTHO05D005601 2.5e-50 205.3 153 61.4
QL05p020001 Quercus lobata HOM05D002451 ORTHO05D005601 1.7e-46 192.6 319 39.8
A06p15140 Brassica napus HOM05D002451 ORTHO05D020166 2.4e-45 188.7 147 72.1
BraA06t24629Z Brassica rapa HOM05D002451 ORTHO05D020166 2.4e-45 188.7 147 72.1
Sc17g0002930 Simmondsia chinensis HOM05D002451 ORTHO05D005601 1.0e-43 183.3 180 52.8
Aa31LG9G10320 Aethionema arabicum HOM05D002451 ORTHO05D005601 6.3e-38 164.1 123 66.7
Sabra03G0029200 Salix brachista HOM05D002451 ORTHO05D005601 3.8e-35 154.8 197 44.2
HPP92_007773 Vanilla planifolia HOM05D002451 ORTHO05D005601 5.2e-32 144.4 158 45.6
TAR624G0431 Trochodendron aralioides HOM05D002451 ORTHO05D005601 1.7e-27 129.4 116 53.4
unitig_88.g27602 Utricularia gibba HOM05D002451 ORTHO05D005601 8.5e-27 127.1 132 49.2
TAR624G0921 Trochodendron aralioides HOM05D002451 ORTHO05D005601 8.8e-24 117.1 221 35.7
Cpa.g.sc25.3 Carica papaya HOM05D002451 ORTHO05D005601 2.0e-23 115.9 96 60.4
SEGI_23779 Sequoiadendron giganteum HOM05D002451 ORTHO05D005601 8.3e-22 110.5 119 46.2
Psat3g036640 Pisum sativum HOM05D002451 ORTHO05D005601 3.1e-21 108.6 173 38.7
EL10Ac9g21205 Beta vulgaris HOM05D002451 ORTHO05D005601 3.5e-20 105.1 180 36.7
HPP92_007804 Vanilla planifolia HOM05D002451 ORTHO05D005601 3.5e-20 105.1 178 36.5
MCO12G207 Micromonas commoda HOM05D002451 ORTHO05D005601 5.9e-20 104.4 1261 21.3
CSS0026050 Camellia sinensis var. sinensis HOM05D002451 ORTHO05D005601 1.1e-18 100.1 101 50.5
CSS0028178 Camellia sinensis var. sinensis HOM05D002451 ORTHO05D005601 1.1e-18 100.1 101 50.5
Psat4g171400 Pisum sativum HOM05D002451 ORTHO05D005601 1.1e-18 100.1 121 46.3
Cre13.g605050 Chlamydomonas reinhardtii HOM05D002451 ORTHO05D005601 5.5e-18 97.8 166 33.7
SHI11090 Sapria himalayana HOM05D002451 ORTHO05D005601 1.5e-15 89.7 63 50.8
CSS0023144 Camellia sinensis var. sinensis HOM05D002451 ORTHO05D005601 3.4e-15 88.6 127 40.9
Peaxi162Scf00038g01031 Petunia axillaris HOM05D002451 ORTHO05D005601 9.8e-15 87.0 55 72.7
SHI11089 Sapria himalayana HOM05D002451 ORTHO05D005601 1.3e-14 86.7 73 60.3
Lj1g0017121 Lotus japonicus HOM05D002451 ORTHO05D005601 6.3e-14 84.3 93 46.2
Zm00001eb029900 Zea mays HOM05D002451 ORTHO05D005601 1.6e-12 79.7 90 45.6
TPR.G18835 Trifolium pratense HOM05D002451 ORTHO05D005601 3.5e-12 78.6 63 58.7
Zm00001eb320400 Zea mays HOM05D002451 ORTHO05D005601 1.3e-11 76.6 278 27.0
SHI11092 Sapria himalayana HOM05D002451 ORTHO05D005601 5.0e-11 74.7 147 32.7
SGA_v2.0_scaffold123G33404 Striga asiatica HOM05D002451 ORTHO05D005601 2.1e-09 69.3 92 39.1
vmacro17797 Vaccinium macrocarpon HOM05D000003 ORTHO05D000007 1.0e-08 67.0 81 45.7
Hund28869 Selenicereus undatus HOM05D002451 ORTHO05D005601 6.8e-08 64.3 58 51.7
Hund28828 Selenicereus undatus HOM05D002451 ORTHO05D005601 8.9e-08 63.9 62 50.0
Medtr5g055460 Medicago truncatula HOM05D002451 ORTHO05D005601 8.3e-06 57.4 44 56.8


User provided reference genes

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