Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
BcaC03g17621 Brassica carinata HOM05D004039 ORTHO05D004573 3.2e-96 355.1 185 100.0
C02p56210 Brassica napus HOM05D004039 ORTHO05D004573 3.2e-96 355.1 185 100.0
BolC2t11677H Brassica oleracea HOM05D004039 ORTHO05D004573 3.2e-96 355.1 185 100.0
BraA02t08705Z Brassica rapa HOM05D004039 ORTHO05D004573 1.6e-92 342.8 185 96.2
BcaB07g29998 Brassica carinata HOM05D004039 ORTHO05D004573 2.3e-91 339.0 185 95.7
A02p37190 Brassica napus HOM05D004039 ORTHO05D004573 9.9e-90 333.6 185 94.6
Thhalv10005412m.g Eutrema salsugineum HOM05D004039 ORTHO05D004573 1.6e-79 299.7 187 87.2
BcaB04g19545 Brassica carinata HOM05D004039 ORTHO05D004573 1.1e-75 287.0 187 84.0
AT5G47920 Arabidopsis thaliana HOM05D004039 ORTHO05D004573 2.0e-74 282.7 188 82.4
BcaC04g23799 Brassica carinata HOM05D004039 ORTHO05D004573 5.8e-74 281.2 187 83.4
BolC9t53384H Brassica oleracea HOM05D004039 ORTHO05D004573 6.4e-73 277.7 187 82.4
CARHR291780 Cardamine hirsuta HOM05D004039 ORTHO05D004573 1.6e-71 273.1 187 80.2
AL8G19920 Arabidopsis lyrata HOM05D004039 ORTHO05D004573 3.9e-70 268.5 189 79.9
Carub.0008s0748 Capsella rubella HOM05D004039 ORTHO05D004573 1.1e-69 266.9 193 78.2
C09p04550 Brassica napus HOM05D004039 ORTHO05D004573 9.6e-69 263.8 187 79.7
BraA09t36066Z Brassica rapa HOM05D004039 ORTHO05D004573 4.5e-66 255.0 187 76.5
Sp2g18420 Schrenkiella parvula HOM05D004039 ORTHO05D004573 7.6e-66 254.2 187 75.9
A09p04290 Brassica napus HOM05D004039 ORTHO05D004573 2.4e-64 249.2 177 79.1
Aa31LG3G14220 Aethionema arabicum HOM05D004039 ORTHO05D004573 9.3e-64 247.3 185 71.9
BcaC06g30835 Brassica carinata HOM05D004039 ORTHO05D004573 9.3e-64 247.3 162 82.1
BolC7t44401H Brassica oleracea HOM05D004039 ORTHO05D004573 1.6e-60 236.5 180 74.4
A06p39450 Brassica napus HOM05D004039 ORTHO05D004573 2.4e-59 232.6 162 80.2
BraA06t26860Z Brassica rapa HOM05D004039 ORTHO05D004573 4.0e-59 231.9 177 74.6
C07p38820 Brassica napus HOM05D004039 ORTHO05D004573 3.4e-58 228.8 162 79.0
THA.LOC104827510 Tarenaya hassleriana HOM05D004039 ORTHO05D004573 7.9e-55 217.6 188 66.5
THA.LOC104801433 Tarenaya hassleriana HOM05D004039 ORTHO05D004573 1.3e-49 200.3 188 62.2
Atru.chr12.1473 Acer truncatum HOM05D004039 ORTHO05D004573 5.1e-46 188.3 187 59.4
Manes.08G099400 Manihot esculenta HOM05D004039 ORTHO05D004573 5.7e-45 184.9 190 57.4
MD16G1144600 Malus domestica HOM05D004039 ORTHO05D004573 2.2e-44 183.0 199 55.3
MD13G1134000 Malus domestica HOM05D004039 ORTHO05D004573 8.2e-44 181.0 196 55.1
Prupe.1G211600 Prunus persica HOM05D004039 ORTHO05D004573 1.4e-43 180.3 194 54.1
TWI75G0895 Tripterygium wilfordii HOM05D004039 ORTHO05D004573 3.1e-43 179.1 185 57.8
RcHm_v2.0_Chr4g0428421 Rosa chinensis HOM05D004039 ORTHO05D004573 6.9e-43 177.9 195 53.3
Ciclev10030001m.g Citrus clementina HOM05D004039 ORTHO05D004573 9.1e-43 177.6 197 56.3
Cpa.g.sc686.1 Carica papaya HOM05D004039 ORTHO05D004573 4.5e-42 175.3 185 56.8
Eucgr.B03568 Eucalyptus grandis HOM05D004039 ORTHO05D004573 4.5e-42 175.3 193 53.9
QL03p048351 Quercus lobata HOM05D004039 ORTHO05D004573 5.9e-42 174.9 192 56.2
FvH4_4g22190 Fragaria vesca HOM05D004039 ORTHO05D004573 7.7e-42 174.5 190 52.6
MELO3C026747.2 Cucumis melo HOM05D004039 ORTHO05D004573 6.5e-41 171.4 196 54.1
FAN17G1354 Fragaria x ananassa HOM05D004039 ORTHO05D004573 1.1e-40 170.6 190 52.1
Cfa009471 Carpinus fangiana HOM05D004039 ORTHO05D004573 1.4e-40 170.2 186 56.5
FAN07G2708 Fragaria x ananassa HOM05D004039 ORTHO05D004573 1.9e-40 169.9 190 52.1
CiPaw.05G098500 Carya illinoinensis HOM05D004039 ORTHO05D004573 2.5e-40 169.5 186 54.8
Haze_12527 Corylus avellana HOM05D004039 ORTHO05D004573 2.5e-40 169.5 184 56.5
CiPaw.06G111200 Carya illinoinensis HOM05D004039 ORTHO05D004573 1.6e-39 166.8 200 52.5
Potri.003G160300 Populus trichocarpa HOM05D004039 ORTHO05D004573 2.1e-39 166.4 193 52.3
CSS0018669 Camellia sinensis var. sinensis HOM05D004039 ORTHO05D004573 6.1e-39 164.9 203 50.2
ClCG10G013010 Citrullus lanatus HOM05D004039 ORTHO05D004573 1.0e-38 164.1 196 52.6
Hma1.2p1_0738F.1_g210940 Hydrangea macrophylla HOM05D004039 ORTHO05D004573 5.1e-38 161.8 192 52.1
PGR102G1502 Punica granatum HOM05D004039 ORTHO05D004573 6.7e-38 161.4 187 54.0
COL.COLO4_07108 Corchorus olitorius HOM05D004039 ORTHO05D004573 3.3e-37 159.1 183 54.1
PGSC0003DMG400011591 Solanum tuberosum HOM05D004039 ORTHO05D004573 9.7e-37 157.5 208 48.6
Nitab4.5_0019080g0010 Nicotiana tabacum HOM05D004039 ORTHO05D004573 1.7e-36 156.8 192 50.0
GSVIVG01032947001 Vitis vinifera HOM05D004039 ORTHO05D004573 1.7e-36 156.8 196 49.0
Sed0004494 Sechium edule HOM05D004039 ORTHO05D004573 6.3e-36 154.8 195 51.3
Thecc.01G239800 Theobroma cacao HOM05D004039 ORTHO05D004573 1.1e-35 154.1 183 55.2
Oeu010264.1 Olea europaea HOM05D004039 ORTHO05D004573 3.1e-35 152.5 195 49.2
CAN.G1588.13 Capsicum annuum HOM05D004039 ORTHO05D004573 4.1e-35 152.1 205 46.8
Gorai.006G002900 Gossypium raimondii HOM05D004039 ORTHO05D004573 4.1e-35 152.1 186 52.7
Sabra03G0116500 Salix brachista HOM05D004039 ORTHO05D004573 5.3e-35 151.8 192 49.5
Gohir.D09G002400 Gossypium hirsutum HOM05D004039 ORTHO05D004573 9.1e-35 151.0 186 52.7
Manes.11G073200 Manihot esculenta HOM05D004039 ORTHO05D004573 1.2e-34 150.6 220 44.1
Sopen09g034240 Solanum pennellii HOM05D004039 ORTHO05D004573 1.5e-34 150.2 209 47.8
CANSAT64G1067 Cannabis sativa HOM05D004039 ORTHO05D004573 3.4e-34 149.1 213 49.8
VMungo1302G0001 Vigna mungo HOM05D004039 ORTHO05D004573 5.9e-34 148.3 203 47.3
Duzib205G0448 Durio zibethinus HOM05D001017 ORTHO05D001025 1.0e-33 147.5 173 54.9
Sc11g0000030 Simmondsia chinensis HOM05D004039 ORTHO05D004573 1.7e-33 146.7 198 48.5
HanXRQChr10g0319941 Helianthus annuus HOM05D004039 ORTHO05D004573 2.2e-33 146.4 197 49.2
Gohir.D12G146700 Gossypium hirsutum HOM05D004039 ORTHO05D004573 3.8e-33 145.6 206 46.1
Sabra14G0105500 Salix brachista HOM05D000032 ORTHO05D009383 3.8e-33 145.6 208 44.7
EL10Ac2g04246 Beta vulgaris HOM05D004039 ORTHO05D004573 5.0e-33 145.2 212 42.5
Gohir.A09G002600 Gossypium hirsutum HOM05D004039 ORTHO05D004573 5.0e-33 145.2 186 52.7
HPP92_025084 Vanilla planifolia HOM05D004039 ORTHO05D004573 5.0e-33 145.2 194 48.5
QL02p068241 Quercus lobata HOM05D004039 ORTHO05D004573 6.5e-33 144.8 208 45.7
Potri.014G140000 Populus trichocarpa HOM05D004039 ORTHO05D004573 1.1e-32 144.1 210 44.3
Gorai.008G157900 Gossypium raimondii HOM05D004039 ORTHO05D004573 1.4e-32 143.7 210 45.2
MBI11_g23197_MAGBIO Magnolia biondii HOM05D004039 ORTHO05D004573 2.5e-32 142.9 197 49.2
Gohir.A12G141800 Gossypium hirsutum HOM05D004039 ORTHO05D004573 4.2e-32 142.1 206 45.1
Haze_14987 Corylus avellana HOM05D004039 ORTHO05D004573 5.5e-32 141.7 214 43.0
Thecc.04G052000 Theobroma cacao HOM05D004039 ORTHO05D004573 9.4e-32 141.0 208 43.8
Lalb_Chr14g0364131 Lupinus albus HOM05D004039 ORTHO05D004573 1.6e-31 140.2 207 44.0
Sabra01G0049400 Salix brachista HOM05D004039 ORTHO05D004573 1.6e-31 140.2 198 48.0
Solyc09g091270.3 Solanum lycopersicum HOM05D004039 ORTHO05D004573 4.7e-31 138.7 176 51.1
Phvul.001G098500 Phaseolus vulgaris HOM05D004039 ORTHO05D004573 6.1e-31 138.3 204 43.1
TAR374G0420 Trochodendron aralioides HOM05D004039 ORTHO05D004573 6.1e-31 138.3 184 48.4
Gohir.D03G099900 Gossypium hirsutum HOM05D004039 ORTHO05D004573 3.0e-30 136.0 180 50.6
Gorai.003G105000 Gossypium raimondii HOM05D004039 ORTHO05D004573 3.0e-30 136.0 180 50.6
COL.COLO4_13404 Corchorus olitorius HOM05D004039 ORTHO05D004573 3.9e-30 135.6 190 43.7
Ah.16g104320 Amaranthus hybridus HOM05D004039 ORTHO05D004573 5.2e-30 135.2 211 41.7
Gohir.A03G073400 Gossypium hirsutum HOM05D004039 ORTHO05D004573 8.8e-30 134.4 180 50.0
Lalb_Chr24g0402991 Lupinus albus HOM05D004039 ORTHO05D004573 1.1e-29 134.0 214 42.5
Manes.04G096800 Manihot esculenta HOM05D004039 ORTHO05D004573 2.6e-29 132.9 192 42.7
AUR62012365 Chenopodium quinoa HOM05D004039 ORTHO05D004573 3.3e-29 132.5 210 41.4
Glyma.19G106500 Glycine max HOM05D004039 ORTHO05D004573 4.4e-29 132.1 212 42.0
ATR0582G327 Amborella trichopoda HOM05D004039 ORTHO05D004573 7.4e-29 131.3 185 44.9
Cpa.g.sc70.36 Carica papaya HOM05D004039 ORTHO05D004573 7.4e-29 131.3 179 44.1
Peaxi162Scf00047g00153 Petunia axillaris HOM05D004039 ORTHO05D004573 7.4e-29 131.3 163 49.1
Dinv06937 Davidia involucrata HOM05D004039 ORTHO05D004573 2.8e-28 129.4 165 47.9
Duzib187G1305 Durio zibethinus HOM05D004039 ORTHO05D004573 2.8e-28 129.4 220 40.9
AUR62031493 Chenopodium quinoa HOM05D004039 ORTHO05D004573 3.7e-28 129.0 210 41.0
CsaV3_3G032870 Cucumis sativus L. HOM05D004039 ORTHO05D004573 3.7e-28 129.0 196 45.9
PGR042G1501 Punica granatum HOM05D004039 ORTHO05D004573 3.7e-28 129.0 224 38.4
Cc02_g30640 Coffea canephora HOM05D004039 ORTHO05D004573 4.8e-28 128.6 218 41.3
Ciclev10016691m.g Citrus clementina HOM05D004039 ORTHO05D004573 8.2e-28 127.9 214 40.7
SHI11395 Sapria himalayana HOM05D004039 ORTHO05D004573 1.4e-27 127.1 202 41.1
Eucgr.I01568 Eucalyptus grandis HOM05D004039 ORTHO05D004573 3.1e-27 125.9 181 45.9
Nn3g16207 Nelumbo nucifera HOM05D004039 ORTHO05D004573 1.2e-26 124.0 195 42.6
Cfa007136 Carpinus fangiana HOM05D004039 ORTHO05D004573 2.0e-26 123.2 219 41.1
Eucgr.G01911 Eucalyptus grandis HOM05D004039 ORTHO05D004573 2.0e-26 123.2 203 41.4
Lj1g0002386 Lotus japonicus HOM05D004039 ORTHO05D004573 2.0e-26 123.2 204 43.1
Glyma.16G045200 Glycine max HOM05D004039 ORTHO05D004573 5.9e-26 121.7 213 41.3
DCAR_031611 Daucus carota HOM05D004039 ORTHO05D004573 2.9e-25 119.4 187 42.8
Psat3g089920 Pisum sativum HOM05D004039 ORTHO05D004573 1.1e-24 117.5 211 39.3
PSO017G5432 Papaver somniferum HOM05D004039 ORTHO05D004573 1.5e-24 117.1 186 43.5
Ca_08235_v3 Cicer arietinum L. HOM05D004039 ORTHO05D004573 4.2e-24 115.5 217 38.2
BcaC04g24246 Brassica carinata HOM05D004039 ORTHO05D004573 1.2e-23 114.0 187 40.1
Migut.K01132 Erythranthe guttata HOM05D004039 ORTHO05D004573 1.2e-23 114.0 202 38.6
MD17G1003900 Malus domestica HOM05D004039 ORTHO05D004573 1.6e-23 113.6 232 34.9
Atru.chr6.2731 Acer truncatum HOM05D004039 ORTHO05D004573 2.1e-23 113.2 215 36.3
BraA10t44513Z Brassica rapa HOM05D004039 ORTHO05D004573 2.1e-23 113.2 189 38.1
Rhsim12G0091100 Rhododendron simsii HOM05D004039 ORTHO05D004573 2.7e-23 112.8 193 43.0
Medtr7g084740 Medicago truncatula HOM05D004039 ORTHO05D004573 3.6e-23 112.5 226 38.9
PSO478G3045 Papaver somniferum HOM05D004039 ORTHO05D004573 3.6e-23 112.5 187 43.3
BcaC04g19071 Brassica carinata HOM05D004039 ORTHO05D004573 4.7e-23 112.1 190 37.9
C09p63220 Brassica napus HOM05D004039 ORTHO05D004573 4.7e-23 112.1 190 37.9
BolC9t59158H Brassica oleracea HOM05D004039 ORTHO05D004573 4.7e-23 112.1 190 37.9
Carub.0006s1207 Capsella rubella HOM05D004039 ORTHO05D004573 4.7e-23 112.1 189 37.6
CDE05G3127 Ceratophyllum demersum HOM05D004039 ORTHO05D004573 4.7e-23 112.1 199 36.2
AL6G24520 Arabidopsis lyrata HOM05D004039 ORTHO05D004573 6.1e-23 111.7 195 40.5
GSVIVG01001118001 Vitis vinifera HOM05D004039 ORTHO05D011171 6.1e-23 111.7 160 46.9
AT5G13880 Arabidopsis thaliana HOM05D004039 ORTHO05D004573 1.0e-22 110.9 190 40.0
Thhalv10014767m.g Eutrema salsugineum HOM05D004039 ORTHO05D004573 2.3e-22 109.8 192 37.0
Sp6g30120 Schrenkiella parvula HOM05D004039 ORTHO05D004573 4.0e-22 109.0 187 39.6
TPR.G31659 Trifolium pratense HOM05D004039 ORTHO05D004573 6.7e-22 108.2 217 37.8
A10p24480 Brassica napus HOM05D004039 ORTHO05D004573 8.8e-22 107.8 189 38.1
Psat3g090520 Pisum sativum HOM05D004039 ORTHO05D004573 1.2e-21 107.5 215 37.2
Psat3g090560 Pisum sativum HOM05D004039 ORTHO05D004573 1.5e-21 107.1 246 33.3
CARHR199550 Cardamine hirsuta HOM05D004039 ORTHO05D004573 1.3e-20 104.0 185 37.8
Medtr7g084710 Medicago truncatula HOM05D004039 ORTHO05D004573 1.7e-20 103.6 215 38.1
Medtr7g084720 Medicago truncatula HOM05D004039 ORTHO05D004573 2.8e-20 102.8 190 36.3
TWI12G1264 Tripterygium wilfordii HOM05D004039 ORTHO05D004573 4.8e-20 102.1 192 39.1
Nitab4.5_0002182g0030 Nicotiana tabacum HOM05D004039 ORTHO05D004573 1.1e-19 100.9 111 52.3
Lalb_Chr21g0317001 Lupinus albus HOM05D004039 ORTHO05D004573 3.1e-19 99.4 207 36.2
A03p06250 Brassica napus HOM05D004039 ORTHO05D004573 4.1e-19 99.0 185 37.8
BraA03t09957Z Brassica rapa HOM05D004039 ORTHO05D004573 4.1e-19 99.0 185 37.8
Zm00001eb085640 Zea mays HOM05D004039 ORTHO05D004573 4.1e-19 99.0 209 36.8
Phvul.004G067800 Phaseolus vulgaris HOM05D004039 ORTHO05D004573 5.3e-19 98.6 202 35.6
MBI07_g42011_MAGBIO Magnolia biondii HOM05D004039 ORTHO05D004573 7.0e-19 98.2 221 33.9
C03p07240 Brassica napus HOM05D004039 ORTHO05D004573 1.2e-18 97.4 191 40.3
BolC3t13225H Brassica oleracea HOM05D004039 ORTHO05D004573 1.2e-18 97.4 191 40.3
Glyma.02G068200 Glycine max HOM05D004039 ORTHO05D004573 1.2e-18 97.4 243 32.9
BcaB01g05331 Brassica carinata HOM05D004039 ORTHO05D004573 2.7e-18 96.3 192 39.1
SGA_v2.0_scaffold258G45761 Striga asiatica HOM05D004039 ORTHO05D004573 1.0e-17 94.4 82 59.8
ECA248G3450 Erigeron canadensis HOM05D000009 ORTHO05D000008 1.5e-16 90.5 74 63.5
Os04g0382400 Oryza sativa ssp. japonica HOM05D004039 ORTHO05D004573 5.5e-16 88.6 201 34.3
Zm00001eb181000 Zea mays HOM05D004039 ORTHO05D004573 7.2e-16 88.2 194 35.6
Actinidia33989 Actinidia chinensis HOM05D004548 ORTHO05D005402 1.6e-15 87.0 176 39.2
CDE02G1703 Ceratophyllum demersum HOM05D004039 ORTHO05D004573 3.6e-15 85.9 184 32.1
Prupe.3G315300 Prunus persica HOM05D004039 ORTHO05D004573 3.6e-15 85.9 223 32.7
TPR.G31663 Trifolium pratense HOM05D004039 ORTHO05D004573 1.8e-14 83.6 160 37.5
FAN12G1550 Fragaria x ananassa HOM05D004039 ORTHO05D004573 3.0e-14 82.8 110 45.5
CDE06G1383 Ceratophyllum demersum HOM05D004039 ORTHO05D004573 4.0e-14 82.4 183 34.4
SEGI_35194 Sequoiadendron giganteum HOM05D004039 ORTHO05D004573 4.0e-14 82.4 187 36.4
CiPaw.14G093600 Carya illinoinensis HOM05D004039 ORTHO05D004573 9.8e-13 77.8 187 33.2
Aqoxy3G01771 Aquilegia oxysepala HOM05D004039 ORTHO05D004573 6.3e-12 75.1 72 59.7
Zm00001eb318100 Zea mays HOM05D015480 ORTHO05D019326 1.2e-10 70.9 200 29.5
Sed0011010 Sechium edule HOM05D004039 ORTHO05D004573 1.6e-10 70.5 71 54.9
Rhsim08G0037500 Rhododendron simsii HOM05D004039 ORTHO05D000739 2.7e-10 69.7 184 34.2
CsaV3_3G020070 Cucumis sativus L. HOM05D004039 ORTHO05D004573 3.5e-10 69.3 159 35.2
PGR119G1683 Punica granatum HOM05D004039 ORTHO05D004573 2.3e-09 66.6 197 33.0
MELO3C014757.2 Cucumis melo HOM05D004039 ORTHO05D004573 5.0e-09 65.5 170 33.5
ClCG05G012460 Citrullus lanatus HOM05D004039 ORTHO05D004573 2.5e-08 63.2 181 31.5
THA.LOC104823341 Tarenaya hassleriana HOM05D004039 ORTHO05D004573 2.5e-08 63.2 175 32.6
Zm00001eb359900 Zea mays HOM05D015480 ORTHO05D019326 9.5e-08 61.2 173 26.0
Ah.02g128730 Amaranthus hybridus HOM05D029470 ORTHO05D026515 8.0e-07 58.2 193 28.5
Oeu035281.1 Olea europaea HOM05D004039 ORTHO05D004573 1.0e-06 57.8 150 30.7
AUR62012046 Chenopodium quinoa HOM05D003703 ORTHO05D004278 1.4e-06 57.4 66 47.0


User provided reference genes

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