Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
BcaC03g17580 Brassica carinata HOM05D006007 ORTHO05D007518 2.7e-289 998.0 543 100.0
C02p55600 Brassica napus HOM05D006007 ORTHO05D007518 7.0e-285 983.4 543 98.3
BolC2t11616H Brassica oleracea HOM05D006007 ORTHO05D007518 7.0e-285 983.4 543 98.3
A02p36640 Brassica napus HOM05D006007 ORTHO05D007518 4.3e-258 894.4 557 89.9
BraA02t08659Z Brassica rapa HOM05D006007 ORTHO05D007518 5.6e-258 894.0 557 90.1
BcaB07g30079 Brassica carinata HOM05D006007 ORTHO05D007518 1.6e-244 849.4 557 87.1
Sp2g17990 Schrenkiella parvula HOM05D006007 ORTHO05D007518 9.3e-221 770.4 576 80.2
Thhalv10003901m.g Eutrema salsugineum HOM05D006007 ORTHO05D007518 2.1e-220 769.2 570 77.5
AL5G19590 Arabidopsis lyrata HOM05D006007 ORTHO05D007518 1.8e-195 686.4 590 71.0
Carub.0005s0814 Capsella rubella HOM05D006007 ORTHO05D007518 9.0e-192 674.1 573 71.9
Aa31LG2G3900 Aethionema arabicum HOM05D006007 ORTHO05D007518 9.7e-186 654.1 582 69.8
AT3G29390 Arabidopsis thaliana HOM05D006007 ORTHO05D007518 1.1e-170 604.0 483 74.3
THA.LOC104823889 Tarenaya hassleriana HOM05D006007 ORTHO05D007518 7.0e-160 568.2 598 60.2
TAR264G0002 Trochodendron aralioides HOM05D006007 ORTHO05D007518 9.2e-128 461.5 606 52.6
Gorai.007G082800 Gossypium raimondii HOM05D006007 ORTHO05D007518 4.6e-127 459.1 617 53.2
Gohir.A11G072800 Gossypium hirsutum HOM05D006007 ORTHO05D007518 7.8e-127 458.4 613 53.5
Duzib264G0491 Durio zibethinus HOM05D006007 ORTHO05D007518 1.9e-125 453.8 596 53.0
TWI32G0586 Tripterygium wilfordii HOM05D006007 ORTHO05D007518 1.9e-125 453.8 550 54.9
QL02p067640 Quercus lobata HOM05D006007 ORTHO05D007518 2.8e-124 449.9 605 50.6
Atru.chr8.458 Acer truncatum HOM05D006007 ORTHO05D007518 4.7e-124 449.1 594 50.0
Thecc.04G095300 Theobroma cacao HOM05D006007 ORTHO05D007518 6.2e-124 448.7 601 52.2
Potri.017G093600 Populus trichocarpa HOM05D006007 ORTHO05D007518 1.4e-123 447.6 604 52.0
Gohir.D11G077100 Gossypium hirsutum HOM05D006007 ORTHO05D007518 1.8e-123 447.2 617 52.4
Manes.02G054700 Manihot esculenta HOM05D006007 ORTHO05D007518 3.1e-123 446.4 623 51.0
Ciclev10011374m.g Citrus clementina HOM05D006007 ORTHO05D007518 7.6e-122 441.8 572 52.3
Nn4g23426 Nelumbo nucifera HOM05D006007 ORTHO05D007518 1.7e-121 440.7 611 52.9
Sabra17G0082500 Salix brachista HOM05D006007 ORTHO05D007518 1.9e-120 437.2 597 50.8
Cc07_g04190 Coffea canephora HOM05D006007 ORTHO05D007518 3.2e-120 436.4 603 49.3
Dinv34943 Davidia involucrata HOM05D006007 ORTHO05D007518 1.0e-118 431.4 482 56.0
Cfa007665 Carpinus fangiana HOM05D006007 ORTHO05D007518 1.3e-118 431.0 616 48.7
RcHm_v2.0_Chr2g0165881 Rosa chinensis HOM05D006007 ORTHO05D007518 5.1e-118 429.1 599 51.1
GSVIVG01032902001 Vitis vinifera HOM05D006007 ORTHO05D007518 6.6e-118 428.7 602 50.7
CiPaw.03G088800 Carya illinoinensis HOM05D006007 ORTHO05D007518 1.1e-117 427.9 617 48.6
PSO017G6380 Papaver somniferum HOM05D006007 ORTHO05D007518 2.5e-117 426.8 592 53.2
FAN09G0451 Fragaria x ananassa HOM05D006007 ORTHO05D007518 3.3e-117 426.4 614 49.8
FAN05G3222 Fragaria x ananassa HOM05D006007 ORTHO05D007518 1.8e-115 420.6 629 48.2
PSO478G1877 Papaver somniferum HOM05D006007 ORTHO05D007518 1.8e-115 420.6 587 53.0
Cpa.g.sc14.172 Carica papaya HOM05D006007 ORTHO05D007518 1.2e-114 417.9 391 64.7
CANSAT64G1701 Cannabis sativa HOM05D006007 ORTHO05D007518 2.0e-114 417.2 614 49.3
Lalb_Chr17g0337001 Lupinus albus HOM05D006007 ORTHO05D007518 5.8e-114 415.6 628 47.5
FvH4_6g46910 Fragaria vesca HOM05D006007 ORTHO05D007518 4.9e-113 412.5 606 50.2
Haze_14433 Corylus avellana HOM05D006007 ORTHO05D007518 1.9e-112 410.6 491 54.6
COL.COLO4_07027 Corchorus olitorius HOM05D006007 ORTHO05D007518 7.1e-112 408.7 489 54.2
MSTRG.23885 Avicennia marina HOM05D006007 ORTHO05D007518 2.7e-111 406.8 594 47.8
CSS0026219 Camellia sinensis var. sinensis HOM05D006007 ORTHO05D007518 7.8e-111 405.2 592 49.8
Phvul.008G033600 Phaseolus vulgaris HOM05D006007 ORTHO05D007518 2.3e-110 403.7 555 49.4
CiPaw.04G055900 Carya illinoinensis HOM05D006007 ORTHO05D007518 5.1e-110 402.5 386 62.2
CSS0007202 Camellia sinensis var. sinensis HOM05D006007 ORTHO05D007518 6.6e-110 402.1 592 50.2
FAN02G0083 Fragaria x ananassa HOM05D006007 ORTHO05D007518 7.3e-109 398.7 615 49.1
Glyma.18G266400 Glycine max HOM05D006007 ORTHO05D007518 1.6e-108 397.5 635 46.5
FAN05G2596 Fragaria x ananassa HOM05D006007 ORTHO05D007518 6.2e-108 395.6 483 54.0
EL10Ac2g03139 Beta vulgaris HOM05D006007 ORTHO05D007518 1.8e-107 394.0 593 49.2
Ca_04352_v3 Cicer arietinum L. HOM05D006007 ORTHO05D007518 1.8e-107 394.0 649 45.9
AUR62018183 Chenopodium quinoa HOM05D006007 ORTHO05D007518 1.5e-106 391.0 457 53.8
Prupe.3G255200 Prunus persica HOM05D006007 ORTHO05D007518 2.0e-106 390.6 495 53.3
Aqoxy3G03693 Aquilegia oxysepala HOM05D006007 ORTHO05D007518 4.4e-106 389.4 569 49.9
Lj1g0023913 Lotus japonicus HOM05D006007 ORTHO05D007518 5.8e-106 389.0 635 47.6
Ah.10g032260 Amaranthus hybridus HOM05D006007 ORTHO05D007518 1.7e-105 387.5 506 49.8
FAN14G4567 Fragaria x ananassa HOM05D006007 ORTHO05D007518 1.7e-105 387.5 624 47.9
Migut.H00628 Erythranthe guttata HOM05D006007 ORTHO05D007518 2.2e-105 387.1 480 52.1
Glyma.08G245100 Glycine max HOM05D006007 ORTHO05D007518 1.4e-104 384.4 524 49.2
PGR004G1158 Punica granatum HOM05D006007 ORTHO05D007518 1.9e-104 384.0 539 47.9
Solyc02g066940.4 Solanum lycopersicum HOM05D006007 ORTHO05D007518 3.2e-104 383.3 562 48.8
Ca_30479_v3 Cicer arietinum L. HOM05D006007 ORTHO05D007518 5.4e-104 382.5 524 48.3
ECA246G0757 Erigeron canadensis HOM05D006007 ORTHO05D007518 9.3e-104 381.7 549 48.3
Hund15552 Selenicereus undatus HOM05D006007 ORTHO05D007518 9.3e-104 381.7 465 53.5
CAN.G398.20 Capsicum annuum HOM05D006007 ORTHO05D007518 1.2e-103 381.3 567 47.3
Sed0005820 Sechium edule HOM05D006007 ORTHO05D007518 3.5e-103 379.8 619 45.1
SalBow1G7079 Salvia bowleyana HOM05D006007 ORTHO05D007518 4.6e-103 379.4 467 51.0
Nitab4.5_0000212g0230 Nicotiana tabacum HOM05D006007 ORTHO05D007518 7.9e-103 378.6 588 47.1
Medtr7g013700 Medicago truncatula HOM05D006007 ORTHO05D007518 3.9e-102 376.3 620 46.9
PGSC0003DMG400025145 Solanum tuberosum HOM05D006007 ORTHO05D007518 5.1e-102 375.9 569 47.8
Peaxi162Scf00991g00329 Petunia axillaris HOM05D006007 ORTHO05D007518 1.5e-101 374.4 453 51.9
DCAR_005549 Daucus carota HOM05D006007 ORTHO05D007518 5.6e-101 372.5 555 49.2
arahy.Tifrunner.gnm1.ann1.J3LTHX Arachis hypogaea HOM05D006007 ORTHO05D007518 4.8e-100 369.4 533 48.8
arahy.Tifrunner.gnm1.ann1.EQE0CJ Arachis hypogaea HOM05D006007 ORTHO05D007518 8.1e-100 368.6 531 48.4
CDE02G4269 Ceratophyllum demersum HOM05D006007 ORTHO05D007518 8.1e-100 368.6 581 45.8
HanXRQChr17g0546081 Helianthus annuus HOM05D006007 ORTHO05D007518 1.4e-99 367.9 592 47.3
Sopen02g016130 Solanum pennellii HOM05D006007 ORTHO05D007518 1.5e-98 364.4 451 51.4
vmacro05632 Vaccinium macrocarpon HOM05D006007 ORTHO05D007518 2.0e-98 364.0 584 47.4
MELO3C022635.2 Cucumis melo HOM05D006007 ORTHO05D007518 3.4e-98 363.2 636 41.5
Zm00001eb008620 Zea mays HOM05D006007 ORTHO05D007518 4.5e-98 362.8 644 44.3
ATR0177G014 Amborella trichopoda HOM05D006007 ORTHO05D007518 4.9e-97 359.4 616 45.0
unitig_52.g17640 Utricularia gibba HOM05D006007 ORTHO05D007518 1.4e-96 357.8 582 46.7
AUR62038668 Chenopodium quinoa HOM05D006007 ORTHO05D007518 1.2e-95 354.8 359 59.9
HPP92_007829 Vanilla planifolia HOM05D006007 ORTHO05D007518 2.1e-95 354.0 616 42.0
CsaV3_4G009190 Cucumis sativus L. HOM05D006007 ORTHO05D007518 1.3e-94 351.3 490 47.3
Rhsim10G0048800 Rhododendron simsii HOM05D006007 ORTHO05D007518 1.9e-93 347.4 585 42.7
ClCG07G016350 Citrullus lanatus HOM05D006007 ORTHO05D007518 2.5e-93 347.1 519 46.6
Lj4A118G52 Lonicera japonica HOM05D006007 ORTHO05D007518 3.7e-92 343.2 587 43.3
Oeu004412.3 Olea europaea HOM05D006007 ORTHO05D007518 1.1e-91 341.7 668 43.0
Psat3g201920 Pisum sativum HOM05D006007 ORTHO05D007518 3.2e-88 330.1 395 50.9
Lsat_1_v5_gn_3_97780 Lactuca sativa HOM05D006007 ORTHO05D007518 9.6e-85 318.5 590 41.0
Nitab4.5_0010627g0030 Nicotiana tabacum HOM05D006007 ORTHO05D007518 2.2e-81 307.4 482 46.3
TPR.G33475 Trifolium pratense HOM05D006007 ORTHO05D007518 5.3e-75 286.2 218 69.3
SEGI_40404 Sequoiadendron giganteum HOM05D006007 ORTHO05D007518 7.9e-71 272.3 588 36.7
Hma1.2p1_0481F.1_g162150 Hydrangea macrophylla HOM05D006007 ORTHO05D007518 2.3e-70 270.8 372 50.0
Mapoly0218s0012 Marchantia polymorpha HOM05D006007 ORTHO05D007518 3.0e-70 270.4 615 36.4
Hma1.2p1_0481F.1_g162140 Hydrangea macrophylla HOM05D006007 ORTHO05D007518 6.7e-70 269.2 367 50.4
Eucgr.J01380 Eucalyptus grandis HOM05D006007 ORTHO05D007518 6.3e-68 262.7 402 50.5
MBI19_g00631_MAGBIO Magnolia biondii HOM05D006007 ORTHO05D007518 2.0e-66 257.7 285 52.6
HPP92_007749 Vanilla planifolia HOM05D006007 ORTHO05D007518 1.0e-65 255.4 294 52.4
Pp3c3_22820 Physcomitrium patens HOM05D006007 ORTHO05D007518 2.6e-61 240.7 471 38.2
MD09G1066300 Malus domestica HOM05D006007 ORTHO05D007518 2.2e-52 211.1 230 54.3
BcaC03g17562 Brassica carinata HOM05D006007 ORTHO05D007518 7.0e-51 206.1 229 57.2
Sc10g0004660 Simmondsia chinensis HOM05D006007 ORTHO05D007518 1.0e-49 202.2 245 51.4
MD09G1066400 Malus domestica HOM05D006007 ORTHO05D007518 2.2e-49 201.1 354 44.9
CBR_g19543 Chara braunii HOM05D006007 ORTHO05D007518 2.3e-46 191.0 403 35.2
BraA09t36042Z Brassica rapa HOM05D006007 ORTHO05D007518 1.7e-44 184.9 176 63.6
A09p04060 Brassica napus HOM05D006007 ORTHO05D010543 1.2e-42 178.7 177 63.3
Sc10g0004670 Simmondsia chinensis HOM05D006007 ORTHO05D007518 8.5e-41 172.6 350 39.4
CDE05G1269 Ceratophyllum demersum HOM05D006007 ORTHO05D007518 1.5e-40 171.8 213 48.4
MBI19_g00630_MAGBIO Magnolia biondii HOM05D006007 ORTHO05D007518 1.3e-36 158.7 343 44.6
SHI25685 Sapria himalayana HOM05D006007 ORTHO05D007518 1.8e-35 154.8 142 57.0
SEGI_00365 Sequoiadendron giganteum HOM05D006007 ORTHO05D007518 6.1e-31 139.8 129 55.0
Oeu051018.1 Olea europaea HOM05D006007 ORTHO05D007518 1.4e-30 138.7 234 46.2
Hma1.2p1_0481F.1_g162130 Hydrangea macrophylla HOM05D006007 ORTHO05D007518 2.3e-30 137.9 180 50.0
Os03g0213900 Oryza sativa ssp. japonica HOM05D006007 ORTHO05D007518 4.9e-28 130.2 96 69.8
BolC2t11584H Brassica oleracea HOM05D006007 ORTHO05D007518 3.3e-24 117.5 70 87.1
CARHR153030 Cardamine hirsuta HOM05D006007 ORTHO05D007518 1.5e-21 108.6 65 84.6
SHI25684 Sapria himalayana HOM05D006007 ORTHO05D007518 1.5e-21 108.6 162 45.1
Cre09.g389900 Chlamydomonas reinhardtii HOM05D006007 ORTHO05D007518 1.5e-16 92.0 387 25.1
CDE05G3437 Ceratophyllum demersum HOM05D006007 ORTHO05D007518 3.1e-14 84.3 246 34.6
MBI15_g14467_MAGBIO Magnolia biondii HOM05D003623 ORTHO05D007518 1.9e-11 75.1 122 43.4
HPP92_007750 Vanilla planifolia HOM05D006007 ORTHO05D007518 1.0e-09 69.3 104 48.1
CARHR284270 Cardamine hirsuta HOM05D006007 ORTHO05D007518 3.3e-08 64.3 45 73.3


User provided reference genes

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