Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
BcaC03g17570 Brassica carinata HOM05D007093 ORTHO05D008910 3.0e-205 718.4 393 100.0
C02p55490 Brassica napus HOM05D007093 ORTHO05D008910 2.4e-101 373.2 422 54.5
BolC2t11605H Brassica oleracea HOM05D007093 ORTHO05D008910 2.4e-101 373.2 422 54.5
BcaB07g30086 Brassica carinata HOM05D007093 ORTHO05D008910 4.2e-98 362.5 555 44.0
C02p55430 Brassica napus HOM05D007093 ORTHO05D008910 4.7e-89 332.4 387 54.0
BolC2t11599H Brassica oleracea HOM05D007093 ORTHO05D008910 8.2e-86 321.6 380 53.7
Sp2g17890 Schrenkiella parvula HOM05D007093 ORTHO05D008910 3.1e-85 319.7 579 39.7
AL5G19290 Arabidopsis lyrata HOM05D007093 ORTHO05D008910 2.3e-80 303.5 572 38.6
Carub.0005s0800 Capsella rubella HOM05D007093 ORTHO05D008910 5.2e-80 302.4 315 54.3
Thhalv10003982m.g Eutrema salsugineum HOM05D007093 ORTHO05D008910 8.8e-80 301.6 315 54.9
CARHR153970 Cardamine hirsuta HOM05D007093 ORTHO05D008910 1.2e-76 291.2 315 53.0
AT3G29290 Arabidopsis thaliana HOM05D007093 ORTHO05D008910 5.5e-74 282.3 315 51.4
BolC7t44340H Brassica oleracea HOM05D007093 ORTHO05D008910 2.8e-65 253.4 561 37.1
BcaC06g33684 Brassica carinata HOM05D007093 ORTHO05D008910 4.0e-64 249.6 561 36.9
C07p38180 Brassica napus HOM05D007093 ORTHO05D008910 2.0e-63 247.3 561 36.7
QL09p029436 Quercus lobata HOM05D007093 ORTHO05D008910 3.1e-56 223.4 315 41.9
A06p39990 Brassica napus HOM05D007093 ORTHO05D008910 8.3e-54 215.3 565 40.2
BraA06t26914Z Brassica rapa HOM05D007093 ORTHO05D008910 1.4e-53 214.5 565 40.2
Ciclev10011344m.g Citrus clementina HOM05D007093 ORTHO05D008910 7.8e-52 208.8 316 40.2
Cpa.g.sc14.149 Carica papaya HOM05D007093 ORTHO05D008910 3.9e-51 206.5 315 39.0
Aa31LG10G7310 Aethionema arabicum HOM05D007093 ORTHO05D006741 6.6e-51 205.7 290 43.4
TWI60G1187 Tripterygium wilfordii HOM05D007093 ORTHO05D008910 8.6e-51 205.3 315 38.4
unitig_899.g15158 Utricularia gibba HOM05D007093 ORTHO05D008910 9.5e-50 201.8 315 37.8
Dinv11483 Davidia involucrata HOM05D007093 ORTHO05D008910 1.2e-49 201.4 315 38.1
TAR622G0743 Trochodendron aralioides HOM05D007093 ORTHO05D008910 6.2e-49 199.1 318 38.1
CSS0026118 Camellia sinensis var. sinensis HOM05D007093 ORTHO05D008910 1.1e-48 198.4 320 37.5
SalBow1G5933 Salvia bowleyana HOM05D007093 ORTHO05D008910 1.2e-47 194.9 316 37.0
Atru.chr6.1376 Acer truncatum HOM05D007093 ORTHO05D008910 2.0e-47 194.1 315 38.1
QL09p029458 Quercus lobata HOM05D007093 ORTHO05D008910 2.6e-47 193.7 315 37.5
Cfa007712 Carpinus fangiana HOM05D007093 ORTHO05D008910 4.4e-47 193.0 319 36.1
Gohir.A09G011300 Gossypium hirsutum HOM05D007093 ORTHO05D008910 5.8e-47 192.6 315 37.1
CiPaw.04G051100 Carya illinoinensis HOM05D007093 ORTHO05D008910 2.2e-46 190.7 312 36.9
RcHm_v2.0_Chr2g0164431 Rosa chinensis HOM05D007093 ORTHO05D008910 4.9e-46 189.5 315 36.8
CANSAT64G0836 Cannabis sativa HOM05D007093 ORTHO05D008910 1.4e-45 188.0 316 37.0
Gohir.D09G010300 Gossypium hirsutum HOM05D007093 ORTHO05D008910 1.9e-45 187.6 315 36.5
Haze_14367 Corylus avellana HOM05D007093 ORTHO05D008910 2.4e-45 187.2 315 35.6
FvH4_6g46090 Fragaria vesca HOM05D007093 ORTHO05D008910 2.4e-45 187.2 344 34.9
Prupe.3G247100 Prunus persica HOM05D007093 ORTHO05D008910 2.4e-45 187.2 317 36.9
FAN09G1105 Fragaria x ananassa HOM05D007093 ORTHO05D008910 3.2e-45 186.8 340 35.0
MD09G1077000 Malus domestica HOM05D007093 ORTHO05D008910 1.6e-44 184.5 319 37.0
Rhsim10G0045200 Rhododendron simsii HOM05D007093 ORTHO05D008910 1.6e-44 184.5 311 36.0
MELO3C022059.2 Cucumis melo HOM05D007093 ORTHO05D008910 2.7e-44 183.7 315 35.2
Manes.02G051500 Manihot esculenta HOM05D007093 ORTHO05D008910 2.7e-44 183.7 315 36.8
FAN02G0988 Fragaria x ananassa HOM05D007093 ORTHO05D008910 4.6e-44 183.0 340 34.4
FAN05G3563 Fragaria x ananassa HOM05D007093 ORTHO05D008910 6.0e-44 182.6 344 34.6
vmacro19123 Vaccinium macrocarpon HOM05D007093 ORTHO05D008910 7.8e-44 182.2 303 36.0
Lj4A116G82 Lonicera japonica HOM05D007093 ORTHO05D008910 3.9e-43 179.9 315 34.9
Gorai.006G011900 Gossypium raimondii HOM05D007093 ORTHO05D008910 5.1e-43 179.5 315 35.6
PSO478G5205 Papaver somniferum HOM05D007093 ORTHO05D008910 8.6e-43 178.7 313 35.1
AUR62042568 Chenopodium quinoa HOM05D007093 ORTHO05D008910 1.5e-42 177.9 312 34.9
AUR62018158 Chenopodium quinoa HOM05D007093 ORTHO05D008910 3.3e-42 176.8 312 34.9
PSO017G2846 Papaver somniferum HOM05D007093 ORTHO05D008910 5.6e-42 176.0 313 34.8
Potri.017G090500 Populus trichocarpa HOM05D007093 ORTHO05D008910 7.3e-42 175.6 315 35.9
Actinidia07826 Actinidia chinensis HOM05D007093 ORTHO05D008910 1.1e-40 171.8 317 35.0
Peaxi162Scf00166g00640 Petunia axillaris HOM05D007093 ORTHO05D008910 3.1e-40 170.2 314 34.1
Ah.10g031960 Amaranthus hybridus HOM05D007093 ORTHO05D008910 3.4e-39 166.8 315 33.3
Sc10g0003260 Simmondsia chinensis HOM05D007093 ORTHO05D008910 9.9e-39 165.2 312 33.7
Eucgr.J01427 Eucalyptus grandis HOM05D007093 ORTHO05D008910 6.4e-38 162.5 317 34.4
MSTRG.3018 Avicennia marina HOM05D007093 ORTHO05D008910 1.1e-37 161.8 315 33.7
ClCG11G005040 Citrullus lanatus HOM05D007093 ORTHO05D008910 1.4e-37 161.4 315 33.3
Zm00001eb008430 Zea mays HOM05D007093 ORTHO05D008910 1.9e-37 161.0 387 30.0
Nitab4.5_0000565g0100 Nicotiana tabacum HOM05D007093 ORTHO05D008910 5.4e-37 159.5 313 32.3
CAN.G206.202 Capsicum annuum HOM05D007093 ORTHO05D008910 1.2e-36 158.3 312 31.4
Sed0021178 Sechium edule HOM05D007093 ORTHO05D008910 1.2e-36 158.3 336 30.7
Migut.H00649 Erythranthe guttata HOM05D007093 ORTHO05D008910 2.7e-36 157.1 175 47.4
Cc07_g04020 Coffea canephora HOM05D007093 ORTHO05D008910 6.6e-35 152.5 318 31.4
Sopen02g033330 Solanum pennellii HOM05D007093 ORTHO05D008910 6.6e-35 152.5 314 31.5
A02p36520 Brassica napus HOM05D007093 ORTHO05D008910 1.9e-34 151.0 342 35.7
BraA02t08648Z Brassica rapa HOM05D007093 ORTHO05D008910 1.9e-34 151.0 342 35.7
SGA_v2.0_scaffold52G19185 Striga asiatica HOM05D007093 ORTHO05D008910 3.3e-34 150.2 168 48.2
EL10Ac2g03091 Beta vulgaris HOM05D007093 ORTHO05D008910 1.6e-33 147.9 169 44.4
PGR042G3371 Punica granatum HOM05D007093 ORTHO05D008910 2.8e-33 147.1 318 32.1
PGSC0003DMG400001354 Solanum tuberosum HOM05D007093 ORTHO05D008910 2.4e-32 144.1 150 50.0
ECA238G1523 Erigeron canadensis HOM05D007093 ORTHO05D008910 4.0e-32 143.3 310 31.6
Solyc02g088600.4 Solanum lycopersicum HOM05D007093 ORTHO05D008910 2.0e-31 141.0 150 49.3
Nitab4.5_0008213g0020 Nicotiana tabacum HOM05D007093 ORTHO05D008910 5.8e-31 139.4 150 48.0
VMungo1383G0771 Vigna mungo HOM05D007093 ORTHO05D008910 5.8e-31 139.4 314 29.3
TPR.G3254 Trifolium pratense HOM05D007093 ORTHO05D008910 2.9e-30 137.1 313 30.7
Psat3g194440 Pisum sativum HOM05D007093 ORTHO05D008910 3.8e-30 136.7 313 30.0
Phvul.008G024300 Phaseolus vulgaris HOM05D007093 ORTHO05D008910 4.9e-30 136.3 313 29.4
Medtr7g017610 Medicago truncatula HOM05D007093 ORTHO05D008910 8.4e-30 135.6 313 29.7
Lsat_1_v5_gn_2_87781 Lactuca sativa HOM05D007093 ORTHO05D008910 1.1e-29 135.2 174 41.4
Sabra17G0079700 Salix brachista HOM05D007093 ORTHO05D008910 4.6e-28 129.8 265 32.8
THA.LOC104805501 Tarenaya hassleriana HOM05D007093 ORTHO05D008910 6.0e-28 129.4 77 75.3
Glyma.18G276600 Glycine max HOM05D007093 ORTHO05D008910 1.0e-27 128.6 314 27.1
Glyma.08G254100 Glycine max HOM05D007093 ORTHO05D008910 3.9e-27 126.7 314 27.4
Ca_06961_v3 Cicer arietinum L. HOM05D007093 ORTHO05D008910 2.5e-26 124.0 304 29.3
ATR0064G018 Amborella trichopoda HOM05D007093 ORTHO05D008910 1.3e-25 121.7 308 35.4
Duzib147G1133 Durio zibethinus HOM05D007093 ORTHO05D008910 2.1e-25 120.9 314 34.4
COL.COLO4_21381 Corchorus olitorius HOM05D007093 ORTHO05D008910 3.6e-25 120.2 312 30.4
Lj1g0021235 Lotus japonicus HOM05D007093 ORTHO05D008910 4.8e-25 119.8 304 27.0
Nn4g23352 Nelumbo nucifera HOM05D007093 ORTHO05D008910 6.2e-25 119.4 261 31.8
Lalb_Chr10g0092581 Lupinus albus HOM05D007093 ORTHO05D008910 6.9e-24 115.9 314 27.4
arahy.Tifrunner.gnm1.ann1.H8YVTX Arachis hypogaea HOM05D007093 ORTHO05D008910 2.6e-23 114.0 326 27.9
DCAR_005548 Daucus carota HOM05D007093 ORTHO05D008910 2.6e-23 114.0 262 29.4
arahy.Tifrunner.gnm1.ann1.T191C4 Arachis hypogaea HOM05D007093 ORTHO05D008910 2.2e-22 110.9 326 26.7
GSVIVG01011494001 Vitis vinifera HOM05D007093 ORTHO05D008910 3.8e-22 110.2 75 65.3
Thecc.04G091300 Theobroma cacao HOM05D007093 ORTHO05D008910 1.1e-21 108.6 75 62.7
Oeu000638.1 Olea europaea HOM05D007093 ORTHO05D008910 1.2e-20 105.1 261 28.7
HanXRQChr07g0199471 Helianthus annuus HOM05D007093 ORTHO05D008910 1.2e-12 78.6 120 35.8
A06p12740 Brassica napus HOM05D007552 ORTHO05D009397 2.1e-09 67.8 314 23.2
BraA06t24434Z Brassica rapa HOM05D007552 ORTHO05D009397 2.1e-09 67.8 314 23.2
CsaV3_5G038790 Cucumis sativus L. HOM05D007093 ORTHO05D008910 2.8e-09 67.4 64 51.6
Nitab4.5_0009403g0010 Nicotiana tabacum HOM05D000001 ORTHO05D009270 4.8e-09 66.6 177 28.2
Prupe.4G025500 Prunus persica HOM05D007956 ORTHO05D010152 1.1e-08 65.5 180 27.2
Nitab4.5_0000245g0080 Nicotiana tabacum HOM05D000001 ORTHO05D009270 6.9e-08 62.8 168 28.0
Os03g0211600 Oryza sativa ssp. japonica HOM05D007093 ORTHO05D008910 9.0e-08 62.4 61 52.5
Hund13165 Selenicereus undatus HOM05D007093 ORTHO05D008910 2.6e-07 60.8 38 68.4
Zm00001eb408510 Zea mays HOM05D007093 ORTHO05D008910 7.6e-07 59.3 216 24.5
CDE10G0932 Ceratophyllum demersum HOM05D007093 ORTHO05D008910 1.0e-06 58.9 60 48.3
Migut.F00552 Erythranthe guttata HOM05D000104 ORTHO05D009920 1.3e-06 58.5 96 36.5
Sopen01g041720 Solanum pennellii HOM05D000001 ORTHO05D009270 1.3e-06 58.5 168 27.4
C05p15050 Brassica napus HOM05D007552 ORTHO05D009397 1.7e-06 58.2 316 22.5
Medtr7g025610 Medicago truncatula HOM05D007552 ORTHO05D009397 1.7e-06 58.2 179 27.9
CAN.G134.200 Capsicum annuum HOM05D000001 ORTHO05D009270 2.9e-06 57.4 168 27.4
RcHm_v2.0_Chr5g0003911 Rosa chinensis HOM05D007956 ORTHO05D010152 2.9e-06 57.4 115 29.6
Nn7g37484 Nelumbo nucifera HOM05D007202 ORTHO05D009125 8.4e-06 55.8 110 28.2


User provided reference genes

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