Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
BcaC03g17556 Brassica carinata HOM05D000139 ORTHO05D000103 1.7e-45 185.7 96 100.0
BcaC03g17555 Brassica carinata HOM05D000139 ORTHO05D000103 2.5e-44 181.8 95 97.9
A02p36650 Brassica napus HOM05D000139 ORTHO05D000103 3.6e-43 177.9 95 95.8
BraA02t08660Z Brassica rapa HOM05D000139 ORTHO05D000103 3.6e-43 177.9 95 95.8
C02p55610 Brassica napus HOM05D000139 ORTHO05D000103 2.0e-41 172.2 95 94.7
BolC2t11617H Brassica oleracea HOM05D000139 ORTHO05D000103 2.0e-41 172.2 95 94.7
BcaC03g17581 Brassica carinata HOM05D000139 ORTHO05D000103 2.6e-41 171.8 95 94.7
BolC2t11583H Brassica oleracea HOM05D000139 ORTHO05D000103 5.7e-41 170.6 95 91.6
BcaB07g30078 Brassica carinata HOM05D000139 ORTHO05D000103 2.6e-33 145.2 95 78.9
Thhalv10003771m.g Eutrema salsugineum HOM05D000139 ORTHO05D000103 4.7e-27 124.4 95 72.6
A06p39880 Brassica napus HOM05D000139 ORTHO05D000103 1.1e-26 123.2 95 70.5
BraA06t26902Z Brassica rapa HOM05D000139 ORTHO05D000103 1.1e-26 123.2 95 70.5
BcaC06g33693 Brassica carinata HOM05D000139 ORTHO05D000103 4.0e-26 121.3 95 68.4
C07p38270 Brassica napus HOM05D000139 ORTHO05D000103 1.2e-25 119.8 95 68.4
Sp2g18000 Schrenkiella parvula HOM05D000139 ORTHO05D000103 1.3e-24 116.3 98 68.4
BcaC06g30861 Brassica carinata HOM05D000139 ORTHO05D000103 1.7e-24 115.9 92 71.7
AT3G29400 Arabidopsis thaliana HOM05D000139 ORTHO05D000103 2.2e-24 115.5 97 63.9
BolC7t44350H Brassica oleracea HOM05D000139 ORTHO05D000103 2.9e-24 115.2 96 67.7
AL5G19600 Arabidopsis lyrata HOM05D000139 ORTHO05D000103 8.3e-24 113.6 95 64.2
CARHR153060 Cardamine hirsuta HOM05D000139 ORTHO05D000103 8.3e-24 113.6 96 64.6
Aa31LG2G3890 Aethionema arabicum HOM05D000139 ORTHO05D000103 3.2e-23 111.7 95 62.1
Carub.0005s0815 Capsella rubella HOM05D000139 ORTHO05D000103 3.2e-23 111.7 96 63.5
THA.LOC104805512 Tarenaya hassleriana HOM05D000139 ORTHO05D000103 6.8e-18 94.0 100 50.0
BcaC03g17560 Brassica carinata HOM05D000139 ORTHO05D000103 3.9e-13 78.2 39 92.3
TWI60G1138 Tripterygium wilfordii HOM05D000139 ORTHO05D000103 2.5e-12 75.5 90 47.8
Lalb_Chr10g0092951 Lupinus albus HOM05D000139 ORTHO05D000103 4.7e-11 71.2 93 43.0
CiPaw.04G055800 Carya illinoinensis HOM05D000139 ORTHO05D000103 1.1e-10 70.1 86 50.0
Manes.01G095800 Manihot esculenta HOM05D000139 ORTHO05D000103 1.1e-10 70.1 91 42.9
Thecc.04G095500 Theobroma cacao HOM05D000139 ORTHO05D000103 1.8e-10 69.3 102 42.2
Ciclev10011258m.g Citrus clementina HOM05D000139 ORTHO05D000103 5.2e-10 67.8 91 41.8
Manes.02G054800 Manihot esculenta HOM05D000139 ORTHO05D000103 8.9e-10 67.0 92 44.6
COL.COLO4_07029 Corchorus olitorius HOM05D000139 ORTHO05D000103 1.2e-09 66.6 93 41.9
Atru.chr8.457 Acer truncatum HOM05D000139 ORTHO05D000103 1.5e-09 66.2 87 44.8
Lj4P118T48 Lonicera japonica HOM05D000139 ORTHO05D000103 2.0e-09 65.9 90 38.9
TWI34G1329 Tripterygium wilfordii HOM05D000139 ORTHO05D000103 2.0e-09 65.9 93 45.2
Duzib187G0247 Durio zibethinus HOM05D000139 ORTHO05D000103 5.8e-09 64.3 93 41.9
CSS0007544 Camellia sinensis var. sinensis HOM05D000139 ORTHO05D000103 7.6e-09 63.9 85 42.4
CSS0030363 Camellia sinensis var. sinensis HOM05D000139 ORTHO05D000103 7.6e-09 63.9 85 42.4
Duzib147G0893 Durio zibethinus HOM05D000139 ORTHO05D000103 1.3e-08 63.2 93 41.9
Medtr7g013770 Medicago truncatula HOM05D000139 ORTHO05D000103 1.3e-08 63.2 111 38.7
Potri.017G093966 Populus trichocarpa HOM05D000139 ORTHO05D000103 1.3e-08 63.2 100 38.0
QL02p067626 Quercus lobata HOM05D000139 ORTHO05D000103 1.3e-08 63.2 91 41.8
Rhsim10G0049000 Rhododendron simsii HOM05D000139 ORTHO05D000103 1.3e-08 63.2 90 42.2
Haze_14432 Corylus avellana HOM05D000139 ORTHO05D000103 1.7e-08 62.8 91 41.8
Psat3g201840 Pisum sativum HOM05D000139 ORTHO05D000103 2.2e-08 62.4 112 35.7
arahy.Tifrunner.gnm1.ann1.3BME1Z Arachis hypogaea HOM05D000139 ORTHO05D000103 2.9e-08 62.0 105 36.2
Gohir.A05G372100 Gossypium hirsutum HOM05D000139 ORTHO05D000103 2.9e-08 62.0 97 41.2
Cfa007666 Carpinus fangiana HOM05D000139 ORTHO05D000103 3.8e-08 61.6 91 41.8
Gohir.A09G009700 Gossypium hirsutum HOM05D000139 ORTHO05D000103 3.8e-08 61.6 86 41.9
Gohir.D09G008700 Gossypium hirsutum HOM05D000139 ORTHO05D000103 3.8e-08 61.6 86 41.9
CiPaw.03G088700 Carya illinoinensis HOM05D000139 ORTHO05D000103 4.9e-08 61.2 91 38.5
Glyma.08G245400 Glycine max HOM05D000139 ORTHO05D000103 4.9e-08 61.2 116 34.5
Gorai.012G048800 Gossypium raimondii HOM05D000139 ORTHO05D000103 4.9e-08 61.2 95 41.1
HanXRQChr17g0546071 Helianthus annuus HOM05D000139 ORTHO05D000103 4.9e-08 61.2 95 33.7
Lsat_1_v5_gn_4_172461 Lactuca sativa HOM05D000139 ORTHO05D000103 6.4e-08 60.8 93 38.7
Lsat_1_v5_gn_3_97401 Lactuca sativa HOM05D000139 ORTHO05D000103 1.1e-07 60.1 86 41.9
CsaV3_4G009180 Cucumis sativus L. HOM05D000139 ORTHO05D000103 1.9e-07 59.3 87 42.5
Peaxi162Scf00166g00053 Petunia axillaris HOM05D000139 ORTHO05D000103 1.9e-07 59.3 95 36.8
VMungo1383G0504 Vigna mungo HOM05D000139 ORTHO05D000103 1.9e-07 59.3 117 32.5
Dinv33827 Davidia involucrata HOM05D000139 ORTHO05D000103 2.4e-07 58.9 85 38.8
Gohir.D04G043700 Gossypium hirsutum HOM05D000139 ORTHO05D000103 2.4e-07 58.9 97 39.2
Cc07_g04210 Coffea canephora HOM05D000139 ORTHO05D000103 3.2e-07 58.5 90 38.9
Lj1g0024211 Lotus japonicus HOM05D000139 ORTHO05D000103 3.2e-07 58.5 112 33.9
MELO3C024880.2 Cucumis melo HOM05D000139 ORTHO05D000103 4.2e-07 58.2 87 41.4
vmacro05636 Vaccinium macrocarpon HOM05D000139 ORTHO05D000103 4.2e-07 58.2 94 37.2
Sed0023705 Sechium edule HOM05D000139 ORTHO05D000103 5.4e-07 57.8 91 40.7
HanXRQChr17g0551701 Helianthus annuus HOM05D000139 ORTHO05D000103 7.1e-07 57.4 100 35.0
EL10Ac2g03141 Beta vulgaris HOM05D000139 ORTHO05D000103 9.3e-07 57.0 94 40.4
Glyma.18G266600 Glycine max HOM05D000139 ORTHO05D000103 9.3e-07 57.0 108 36.1
Peaxi162Scf00166g00054 Petunia axillaris HOM05D000139 ORTHO05D000103 9.3e-07 57.0 95 34.7
PGR004G2842 Punica granatum HOM05D000139 ORTHO05D000103 9.3e-07 57.0 86 34.9
Migut.H00626 Erythranthe guttata HOM05D000139 ORTHO05D000103 1.2e-06 56.6 89 37.1
MSTRG.3002 Avicennia marina HOM05D000139 ORTHO05D000103 2.1e-06 55.8 89 33.7
DCAR_025430 Daucus carota HOM05D000139 ORTHO05D000103 2.1e-06 55.8 87 37.9
Nitab4.5_0006731g0020 Nicotiana tabacum HOM05D000139 ORTHO05D000103 2.7e-06 55.5 91 38.5
Sopen02g033520 Solanum pennellii HOM05D000139 ORTHO05D000103 2.7e-06 55.5 90 37.8
PGSC0003DMG400001454 Solanum tuberosum HOM05D000139 ORTHO05D000103 2.7e-06 55.5 90 37.8
Nn3g17455 Nelumbo nucifera HOM05D000139 ORTHO05D000103 3.5e-06 55.1 90 35.6
Oeu004413.1 Olea europaea HOM05D000139 ORTHO05D000103 3.5e-06 55.1 88 34.1
Phvul.008G033400 Phaseolus vulgaris HOM05D000139 ORTHO05D000103 3.5e-06 55.1 116 30.2
CSS0040012 Camellia sinensis var. sinensis HOM05D000139 ORTHO05D000103 4.6e-06 54.7 85 38.8
FvH4_6g46900 Fragaria vesca HOM05D000139 ORTHO05D000103 4.6e-06 54.7 96 36.5
FAN09G4150 Fragaria x ananassa HOM05D000139 ORTHO05D000103 4.6e-06 54.7 96 36.5
FAN14G3131 Fragaria x ananassa HOM05D000139 ORTHO05D000103 4.6e-06 54.7 96 36.5
MD17G1059400 Malus domestica HOM05D000139 ORTHO05D000103 4.6e-06 54.7 84 38.1
MD17G1059600 Malus domestica HOM05D000139 ORTHO05D020807 4.6e-06 54.7 84 38.1
Nn4g23431 Nelumbo nucifera HOM05D000139 ORTHO05D000103 4.6e-06 54.7 90 32.2
Rhsim10G0049200 Rhododendron simsii HOM05D000139 ORTHO05D000103 4.6e-06 54.7 89 42.7
Solyc02g088800.2 Solanum lycopersicum HOM05D000139 ORTHO05D000103 4.6e-06 54.7 89 38.2
TAR265G0002 Trochodendron aralioides HOM05D003887 ORTHO05D004523 4.6e-06 54.7 82 39.0
FAN05G1832 Fragaria x ananassa HOM05D000139 ORTHO05D000103 6.0e-06 54.3 96 35.4
Nitab4.5_0002960g0030 Nicotiana tabacum HOM05D000139 ORTHO05D000103 7.8e-06 53.9 94 34.0
Nitab4.5_0003841g0070 Nicotiana tabacum HOM05D000139 ORTHO05D000103 7.8e-06 53.9 91 37.4
PSO017G1911 Papaver somniferum HOM05D000139 ORTHO05D000103 7.8e-06 53.9 90 33.3
PSO478G2618 Papaver somniferum HOM05D000139 ORTHO05D000103 7.8e-06 53.9 90 33.3


User provided reference genes

Program Settings