Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
BcaC03g17547 Brassica carinata HOM05D008101 ORTHO05D010163 2.3e-30 135.2 83 100.0
C02p55260 Brassica napus HOM05D008101 ORTHO05D010163 2.3e-30 135.2 83 100.0
BolC2t11574H Brassica oleracea HOM05D008101 ORTHO05D010163 1.1e-29 132.9 83 98.8
C02p56620 Brassica napus HOM05D008101 ORTHO05D010163 1.1e-27 126.3 88 92.0
BcaC03g17658 Brassica carinata HOM05D008101 ORTHO05D010163 1.4e-27 125.9 88 83.0
BolC2t11721H Brassica oleracea HOM05D008101 ORTHO05D010163 1.4e-27 125.9 88 83.0
A02p36290 Brassica napus HOM05D008101 ORTHO05D010163 3.1e-27 124.8 88 90.9
BraA02t08628Z Brassica rapa HOM05D008101 ORTHO05D010163 3.1e-27 124.8 88 90.9
BcaC06g30874 Brassica carinata HOM05D008101 ORTHO05D010163 7.7e-26 120.2 88 80.7
A06p40170 Brassica napus HOM05D008101 ORTHO05D010163 1.3e-25 119.4 87 79.3
BraA06t26932Z Brassica rapa HOM05D008101 ORTHO05D010163 1.3e-25 119.4 87 79.3
BcaB07g30101 Brassica carinata HOM05D008101 ORTHO05D010163 2.9e-25 118.2 88 86.4
BcaC06g33664 Brassica carinata HOM05D008101 ORTHO05D010163 3.8e-25 117.9 88 78.4
BcaC06g33665 Brassica carinata HOM05D008101 ORTHO05D010163 3.8e-25 117.9 88 78.4
C07p37940 Brassica napus HOM05D008101 ORTHO05D010163 3.8e-25 117.9 88 78.4
BolC7t44316H Brassica oleracea HOM05D008101 ORTHO05D010163 3.8e-25 117.9 88 78.4
AT3G29034 Arabidopsis thaliana HOM05D008101 ORTHO05D010163 1.5e-24 115.9 87 77.0
AL5G18900 Arabidopsis lyrata HOM05D008101 ORTHO05D010163 1.2e-23 112.8 85 76.5
Carub.0005s0764 Capsella rubella HOM05D008101 ORTHO05D010163 1.6e-23 112.5 86 74.4
Sp2g17670 Schrenkiella parvula HOM05D008101 ORTHO05D010163 2.7e-23 111.7 87 82.8
CARHR152140 Cardamine hirsuta HOM05D008101 ORTHO05D010163 2.3e-22 108.6 87 72.4
Carub.0007s3631 Capsella rubella HOM05D008101 ORTHO05D010163 5.9e-18 94.0 84 65.5
Sp7g02370 Schrenkiella parvula HOM05D008101 ORTHO05D010163 3.2e-16 88.2 84 61.9
THA.LOC109116617 Tarenaya hassleriana HOM05D008101 ORTHO05D010163 4.2e-16 87.8 61 77.0
Aa31LG2G4160 Aethionema arabicum HOM05D008101 ORTHO05D010163 1.2e-15 86.3 57 77.2
Prupe.3G265300 Prunus persica HOM05D008101 ORTHO05D010163 1.3e-09 66.2 52 67.3
Potri.010G234200 Populus trichocarpa HOM05D008101 ORTHO05D010163 5.0e-09 64.3 52 67.3
Gohir.D07G212050 Gossypium hirsutum HOM05D008101 ORTHO05D010163 1.1e-08 63.2 52 63.5
Gorai.001G239800 Gossypium raimondii HOM05D008101 ORTHO05D010163 1.1e-08 63.2 52 63.5
Glyma.13G062100 Glycine max HOM05D008101 ORTHO05D010163 1.5e-08 62.8 53 62.3
Gohir.A07G206000 Gossypium hirsutum HOM05D008101 ORTHO05D010163 1.5e-08 62.8 52 61.5
Sopen02g032840 Solanum pennellii HOM05D008101 ORTHO05D010163 1.5e-08 62.8 52 63.5
Thecc.04G085600 Theobroma cacao HOM05D008101 ORTHO05D010163 1.5e-08 62.8 52 61.5
Lj2g0000476 Lotus japonicus HOM05D008101 ORTHO05D010163 1.9e-08 62.4 53 60.4
Cc07_g03530 Coffea canephora HOM05D008101 ORTHO05D010163 3.2e-08 61.6 51 62.7
MD09G1053300 Malus domestica HOM05D008101 ORTHO05D010163 3.2e-08 61.6 48 68.8
CAN.G206.165 Capsicum annuum HOM05D008101 ORTHO05D010163 4.2e-08 61.2 52 63.5
Migut.H00938 Erythranthe guttata HOM05D008101 ORTHO05D010163 7.2e-08 60.5 52 63.5
PGR083G0374 Punica granatum HOM05D008101 ORTHO05D010163 9.4e-08 60.1 52 61.5
Solyc02g088130.1 Solanum lycopersicum HOM05D008101 ORTHO05D010163 9.4e-08 60.1 50 64.0
Medtr6g012640 Medicago truncatula HOM05D008101 ORTHO05D010163 1.2e-07 59.7 52 59.6
Sed0001905 Sechium edule HOM05D008101 ORTHO05D010163 1.6e-07 59.3 52 57.7
CSS0047461 Camellia sinensis var. sinensis HOM05D008101 ORTHO05D010163 2.7e-07 58.5 52 55.8
Dinv33773 Davidia involucrata HOM05D008101 ORTHO05D010163 3.6e-07 58.2 50 54.0
CiPaw.03G024700 Carya illinoinensis HOM05D008101 ORTHO05D010163 4.7e-07 57.8 52 59.6
RcHm_v2.0_Chr2g0167541 Rosa chinensis HOM05D008101 ORTHO05D010163 1.0e-06 56.6 52 57.7
Phvul.004G030000 Phaseolus vulgaris HOM05D008101 ORTHO05D010163 1.4e-06 56.2 53 54.7
Manes.02G047600 Manihot esculenta HOM05D008101 ORTHO05D010163 1.8e-06 55.8 51 58.8
RcHm_v2.0_Chr2g0167501 Rosa chinensis HOM05D008101 ORTHO05D010163 2.3e-06 55.5 52 55.8
RcHm_v2.0_Chr2g0167591 Rosa chinensis HOM05D008101 ORTHO05D010163 4.0e-06 54.7 52 55.8
SalBow1G0549 Salvia bowleyana HOM05D008101 ORTHO05D010163 6.8e-06 53.9 52 59.6
SalBow1G6176 Salvia bowleyana HOM05D008101 ORTHO05D010163 6.8e-06 53.9 52 59.6
Lsat_1_v5_gn_4_179321 Lactuca sativa HOM05D008101 ORTHO05D010163 8.8e-06 53.5 50 52.0
Lsat_1_v5_gn_4_182661 Lactuca sativa HOM05D008101 ORTHO05D010163 8.8e-06 53.5 50 52.0
SalBow8G3752 Salvia bowleyana HOM05D008101 ORTHO05D010163 8.8e-06 53.5 52 59.6


User provided reference genes

Program Settings