Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
BcaC03g17546 Brassica carinata HOM05D004215 ORTHO05D005293 1.6e-68 262.7 139 100.0
BolC2t11573H Brassica oleracea HOM05D004215 ORTHO05D005293 4.4e-66 254.6 134 99.3
C02p55250 Brassica napus HOM05D004215 ORTHO05D005293 8.6e-54 213.8 133 88.7
BcaB03g13074 Brassica carinata HOM05D004215 ORTHO05D005293 2.8e-36 155.6 137 68.6
A08p31720 Brassica napus HOM05D004215 ORTHO05D005293 3.6e-36 155.2 137 67.2
BraA08t35094Z Brassica rapa HOM05D004215 ORTHO05D005293 3.6e-36 155.2 137 67.2
BolC8t49328H Brassica oleracea HOM05D004215 ORTHO05D005293 1.2e-34 150.2 140 65.7
BcaC07g38770 Brassica carinata HOM05D004215 ORTHO05D005293 2.0e-34 149.4 140 64.3
C08p17030 Brassica napus HOM05D004215 ORTHO05D005293 2.0e-34 149.4 140 64.3
Carub.0001s1491 Capsella rubella HOM05D004215 ORTHO05D005293 1.3e-33 146.7 135 65.9
AL1G27210 Arabidopsis lyrata HOM05D004215 ORTHO05D005293 2.9e-33 145.6 135 65.2
Thhalv10008333m.g Eutrema salsugineum HOM05D004215 ORTHO05D005293 2.9e-33 145.6 135 64.4
AT1G15140 Arabidopsis thaliana HOM05D004215 ORTHO05D005293 1.2e-31 140.2 135 62.2
CARHR015680 Cardamine hirsuta HOM05D004215 ORTHO05D005293 2.7e-31 139.0 135 63.7
BcaC05g25445 Brassica carinata HOM05D004215 ORTHO05D005293 7.3e-29 131.0 95 74.7
C05p13270 Brassica napus HOM05D004215 ORTHO05D005293 7.3e-29 131.0 95 74.7
Aa31LG1G20 Aethionema arabicum HOM05D004215 ORTHO05D005293 1.8e-27 126.3 135 57.0
BraA06t24295Z Brassica rapa HOM05D004215 ORTHO05D005293 1.8e-27 126.3 132 60.6
BolC5t30064H Brassica oleracea HOM05D004215 ORTHO05D005293 2.3e-27 125.9 134 59.0
A06p11150 Brassica napus HOM05D004215 ORTHO05D005293 4.0e-27 125.2 94 72.3
BolC5t33841H Brassica oleracea HOM05D004215 ORTHO05D005293 1.5e-26 123.2 93 73.1
Haze_00697 Corylus avellana HOM05D004215 ORTHO05D005293 7.1e-24 114.4 132 53.0
BcaB02g06582 Brassica carinata HOM05D004215 ORTHO05D005293 1.7e-22 109.8 67 82.1
Atru.chr11.354 Acer truncatum HOM05D004215 ORTHO05D005293 3.0e-22 109.0 133 48.1
Cfa015796 Carpinus fangiana HOM05D004215 ORTHO05D005293 3.9e-22 108.6 132 50.8
THA.LOC104805048 Tarenaya hassleriana HOM05D004215 ORTHO05D005293 3.9e-22 108.6 124 52.4
Gohir.D05G319000 Gossypium hirsutum HOM05D004215 ORTHO05D005293 1.1e-21 107.1 122 54.9
Gorai.009G341900 Gossypium raimondii HOM05D004215 ORTHO05D005293 1.1e-21 107.1 122 54.9
PGR102G1684 Punica granatum HOM05D004215 ORTHO05D005293 1.5e-21 106.7 135 49.6
Manes.14G110200 Manihot esculenta HOM05D004215 ORTHO05D005293 1.9e-21 106.3 132 49.2
QL01p002798 Quercus lobata HOM05D004215 ORTHO05D005293 1.9e-21 106.3 135 49.6
Potri.008G126700 Populus trichocarpa HOM05D004215 ORTHO05D005293 3.3e-21 105.5 93 63.4
Potri.010G116500 Populus trichocarpa HOM05D004215 ORTHO05D005293 3.3e-21 105.5 137 51.8
CiPaw.05G246100 Carya illinoinensis HOM05D004215 ORTHO05D005293 4.3e-21 105.1 89 64.0
MBI16_g21171_MAGBIO Magnolia biondii HOM05D004215 ORTHO05D005293 5.6e-21 104.8 123 53.7
TAR629G2922 Trochodendron aralioides HOM05D004215 ORTHO05D005293 5.6e-21 104.8 135 49.6
Sabra10G0086200 Salix brachista HOM05D004215 ORTHO05D005293 7.3e-21 104.4 132 53.0
Sabra10G0087900 Salix brachista HOM05D004215 ORTHO05D005293 7.3e-21 104.4 132 53.0
Gohir.A05G317200 Gossypium hirsutum HOM05D004215 ORTHO05D005293 1.2e-20 103.6 123 53.7
COL.COLO4_15325 Corchorus olitorius HOM05D004215 ORTHO05D005293 1.6e-20 103.2 83 65.1
Sp1g13480 Schrenkiella parvula HOM05D004215 ORTHO05D005293 1.6e-20 103.2 134 50.7
Eucgr.B02879 Eucalyptus grandis HOM05D004215 ORTHO05D005293 2.8e-20 102.4 129 50.4
Peaxi162Scf00205g00925 Petunia axillaris HOM05D004215 ORTHO05D005293 8.1e-20 100.9 133 46.6
Prupe.1G320800 Prunus persica HOM05D004215 ORTHO05D005293 1.4e-19 100.1 130 49.2
Duzib251G0621 Durio zibethinus HOM05D004215 ORTHO05D005293 1.8e-19 99.8 126 48.4
RcHm_v2.0_Chr4g0433881 Rosa chinensis HOM05D004215 ORTHO05D005293 1.8e-19 99.8 131 48.1
arahy.Tifrunner.gnm1.ann1.BMT3C6 Arachis hypogaea HOM05D004215 ORTHO05D005293 2.4e-19 99.4 94 56.4
arahy.Tifrunner.gnm1.ann1.IPKA5V Arachis hypogaea HOM05D004215 ORTHO05D005293 2.4e-19 99.4 94 56.4
TWI79G1401 Tripterygium wilfordii HOM05D004215 ORTHO05D005293 2.4e-19 99.4 82 59.8
FAN17G1658 Fragaria x ananassa HOM05D004215 ORTHO05D005293 3.1e-19 99.0 82 63.4
PGSC0003DMG400030559 Solanum tuberosum HOM05D004215 ORTHO05D005293 3.1e-19 99.0 133 45.9
Sopen05g004280 Solanum pennellii HOM05D004215 ORTHO05D005293 4.0e-19 98.6 133 45.1
AUR62014123 Chenopodium quinoa HOM05D004215 ORTHO05D005293 5.2e-19 98.2 133 47.4
Ciclev10016124m.g Citrus clementina HOM05D004215 ORTHO05D005293 5.2e-19 98.2 133 45.9
Lj5g0023519 Lotus japonicus HOM05D004215 ORTHO05D005293 6.8e-19 97.8 93 57.0
Nn4g24046 Nelumbo nucifera HOM05D004215 ORTHO05D005293 6.8e-19 97.8 135 47.4
Solyc05g008450.3 Solanum lycopersicum HOM05D004215 ORTHO05D005293 6.8e-19 97.8 133 45.1
Cpa.g.sc65.98 Carica papaya HOM05D004215 ORTHO05D005293 8.9e-19 97.4 91 56.0
CSS0048780 Camellia sinensis var. sinensis HOM05D004215 ORTHO05D005293 1.2e-18 97.1 84 59.5
MELO3C012293.2 Cucumis melo HOM05D004215 ORTHO05D005293 2.0e-18 96.3 82 59.8
Sed0020304 Sechium edule HOM05D004215 ORTHO05D005293 2.0e-18 96.3 130 48.5
CDE06G1149 Ceratophyllum demersum HOM05D004215 ORTHO05D005293 2.6e-18 95.9 132 49.2
ClCG05G022300 Citrullus lanatus HOM05D004215 ORTHO05D005293 2.6e-18 95.9 133 47.4
CANSAT01G2004 Cannabis sativa HOM05D004215 ORTHO05D005293 3.4e-18 95.5 135 45.2
Lalb_Chr06g0165701 Lupinus albus HOM05D004215 ORTHO05D005293 3.4e-18 95.5 139 46.0
MD13G1031300 Malus domestica HOM05D004215 ORTHO05D005293 3.4e-18 95.5 124 47.6
Thecc.02G217400 Theobroma cacao HOM05D004215 ORTHO05D005293 3.4e-18 95.5 128 47.7
Aqoxy3G00166 Aquilegia oxysepala HOM05D004215 ORTHO05D005293 4.4e-18 95.1 130 48.5
FvH4_4g26280 Fragaria vesca HOM05D004215 ORTHO05D005293 5.8e-18 94.7 133 46.6
FAN07G0674 Fragaria x ananassa HOM05D004215 ORTHO05D005293 5.8e-18 94.7 133 45.9
FAN12G1757 Fragaria x ananassa HOM05D004215 ORTHO05D005293 5.8e-18 94.7 133 46.6
CiPaw.06G014700 Carya illinoinensis HOM05D004215 ORTHO05D005293 7.6e-18 94.4 134 51.5
DCAR_023619 Daucus carota HOM05D004215 ORTHO05D005293 7.6e-18 94.4 93 51.6
FAN22G1507 Fragaria x ananassa HOM05D004215 ORTHO05D005293 7.6e-18 94.4 133 45.9
Nitab4.5_0000350g0220 Nicotiana tabacum HOM05D004215 ORTHO05D005293 7.6e-18 94.4 141 45.4
Nitab4.5_0000293g0040 Nicotiana tabacum HOM05D004215 ORTHO05D005293 9.9e-18 94.0 148 44.6
TWI31G0297 Tripterygium wilfordii HOM05D004215 ORTHO05D005293 9.9e-18 94.0 133 46.6
CsaV3_5G034820 Cucumis sativus L. HOM05D004215 ORTHO05D005293 1.3e-17 93.6 135 46.7
FAN12G4108 Fragaria x ananassa HOM05D004215 ORTHO05D005293 1.3e-17 93.6 133 46.6
Glyma.10G267000 Glycine max HOM05D004215 ORTHO05D005293 1.3e-17 93.6 107 52.3
Lsat_1_v5_gn_8_41661 Lactuca sativa HOM05D004215 ORTHO05D005293 1.3e-17 93.6 89 56.2
CAN.G1489.9 Capsicum annuum HOM05D004215 ORTHO05D005293 1.7e-17 93.2 84 57.1
Ca_23697_v3 Cicer arietinum L. HOM05D004215 ORTHO05D005293 1.7e-17 93.2 82 57.3
MD16G1033500 Malus domestica HOM05D004215 ORTHO05D005293 2.2e-17 92.8 124 46.8
EL10Ac6g14267 Beta vulgaris HOM05D004215 ORTHO05D005293 2.9e-17 92.4 134 45.5
Phvul.007G035000 Phaseolus vulgaris HOM05D004215 ORTHO05D005293 2.9e-17 92.4 133 47.4
Dinv16170 Davidia involucrata HOM05D004215 ORTHO05D005293 3.8e-17 92.0 135 45.2
Medtr1g108710 Medicago truncatula HOM05D004215 ORTHO05D005293 3.8e-17 92.0 135 45.9
Lalb_Chr17g0338761 Lupinus albus HOM05D004215 ORTHO05D005293 4.9e-17 91.7 94 52.1
AUR62002761 Chenopodium quinoa HOM05D004215 ORTHO05D005293 8.4e-17 90.9 74 63.5
CSS0000916 Camellia sinensis var. sinensis HOM05D004215 ORTHO05D005293 2.4e-16 89.4 146 42.5
Sed0017516 Sechium edule HOM05D004215 ORTHO05D005293 2.4e-16 89.4 80 58.8
VMungo0720G1296 Vigna mungo HOM05D004215 ORTHO05D005293 2.4e-16 89.4 133 43.6
Glyma.20G123700 Glycine max HOM05D004215 ORTHO05D005293 3.2e-16 89.0 86 57.0
Lj3A876G45 Lonicera japonica HOM05D004215 ORTHO05D005293 3.2e-16 89.0 82 56.1
Actinidia15237 Actinidia chinensis HOM05D004215 ORTHO05D005293 5.4e-16 88.2 100 46.0
Actinidia36693 Actinidia chinensis HOM05D004215 ORTHO05D005293 5.4e-16 88.2 89 50.6
Actinidia31987 Actinidia chinensis HOM05D004215 ORTHO05D005293 7.1e-16 87.8 92 50.0
Oeu004319.1 Olea europaea HOM05D004215 ORTHO05D005293 9.3e-16 87.4 85 56.5
ECA233G2791 Erigeron canadensis HOM05D004215 ORTHO05D005293 1.2e-15 87.0 93 50.5
Hund25007 Selenicereus undatus HOM05D004215 ORTHO05D005293 1.2e-15 87.0 82 53.7
HanXRQChr15g0466211 Helianthus annuus HOM05D004215 ORTHO05D005293 3.5e-15 85.5 87 52.9
Actinidia14939 Actinidia chinensis HOM05D004215 ORTHO05D005293 4.6e-15 85.1 92 47.8
PSO478G0614 Papaver somniferum HOM05D004215 ORTHO05D005293 6.0e-15 84.7 134 38.1
Migut.E00397 Erythranthe guttata HOM05D004215 ORTHO05D005293 7.8e-15 84.3 85 57.6
SalBow8G1964 Salvia bowleyana HOM05D004215 ORTHO05D005293 7.8e-15 84.3 127 48.0
vmacro01428 Vaccinium macrocarpon HOM05D004215 ORTHO05D005293 7.8e-15 84.3 76 56.6
Rhsim09G0069000 Rhododendron simsii HOM05D004215 ORTHO05D005293 1.0e-14 84.0 81 53.1
Psat6g222520 Pisum sativum HOM05D004215 ORTHO05D005293 1.7e-14 83.2 138 44.2
SGA_v2.0_scaffold14G06920 Striga asiatica HOM05D004215 ORTHO05D005293 1.7e-14 83.2 134 44.8
DCAR_030188 Daucus carota HOM05D004215 ORTHO05D005293 3.0e-14 82.4 89 56.2
Migut.L00828 Erythranthe guttata HOM05D004215 ORTHO05D005293 3.9e-14 82.0 85 52.9
Migut.L00651 Erythranthe guttata HOM05D004215 ORTHO05D005293 5.1e-14 81.6 83 54.2
PSO017G7108 Papaver somniferum HOM05D004215 ORTHO05D005293 8.7e-14 80.9 142 36.6
MSTRG.2195 Avicennia marina HOM05D004215 ORTHO05D005293 1.1e-13 80.5 86 54.7
unitig_699.g19481 Utricularia gibba HOM05D004215 ORTHO05D005293 1.5e-13 80.1 127 44.1
Sc14g0007220 Simmondsia chinensis HOM05D004215 ORTHO05D005293 2.5e-13 79.3 134 42.5
PGR119G1032 Punica granatum HOM05D004215 ORTHO05D005293 3.3e-13 79.0 84 53.6
HPP92_021849 Vanilla planifolia HOM05D004215 ORTHO05D005293 4.3e-13 78.6 140 42.9
SHI16315 Sapria himalayana HOM05D004215 ORTHO05D005293 7.3e-13 77.8 103 45.6
MSTRG.13568 Avicennia marina HOM05D004215 ORTHO05D005293 2.1e-12 76.3 138 42.8
arahy.Tifrunner.gnm1.ann1.B59VJ6 Arachis hypogaea HOM05D004215 ORTHO05D005293 4.8e-12 75.1 78 51.3
SGA_v2.0_scaffold50G18535 Striga asiatica HOM05D004215 ORTHO05D005293 1.1e-11 73.9 123 43.9
Os02g0328300 Oryza sativa ssp. japonica HOM05D004215 ORTHO05D005293 3.2e-08 62.4 84 48.8
AagrBONN_evm.TU.Sc2ySwM_228.3165 Anthoceros agrestis HOM05D004215 ORTHO05D005293 2.7e-07 59.3 117 35.0
SEGI_29541 Sequoiadendron giganteum HOM05D004215 ORTHO05D005293 4.6e-07 58.5 86 39.5
Zm00001eb241500 Zea mays HOM05D004215 ORTHO05D005293 1.3e-06 57.0 106 40.6
ATR0691G234 Amborella trichopoda HOM05D004215 ORTHO05D005293 1.7e-06 56.6 135 33.3
C08p45130 Brassica napus HOM05D004215 ORTHO05D005293 5.1e-06 55.1 43 69.8
BolC8t52061H Brassica oleracea HOM05D004215 ORTHO05D005293 5.1e-06 55.1 43 69.8


User provided reference genes

Program Settings