Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
BcaC03g17489 Brassica carinata HOM05D003206 ORTHO05D024104 9.4e-92 340.1 165 100.0
BcaB02g08684 Brassica carinata HOM05D003206 ORTHO05D005207 2.2e-64 249.2 164 79.9
A07p26680 Brassica napus HOM05D003206 ORTHO05D005207 4.9e-64 248.1 164 78.7
BcaB02g07269 Brassica carinata HOM05D003206 ORTHO05D005207 1.1e-63 246.9 164 78.0
BcaC08g45315 Brassica carinata HOM05D003206 ORTHO05D005207 1.1e-63 246.9 164 78.0
A07p45230 Brassica napus HOM05D003206 ORTHO05D005207 1.1e-63 246.9 164 78.7
C06p29160 Brassica napus HOM05D003206 ORTHO05D005207 1.1e-63 246.9 164 78.0
BolC6t38080H Brassica oleracea HOM05D003206 ORTHO05D005207 1.1e-63 246.9 164 78.0
BraA07t32026Z Brassica rapa HOM05D003206 ORTHO05D005207 1.1e-63 246.9 164 78.7
C06p54070 Brassica napus HOM05D003206 ORTHO05D005207 1.4e-63 246.5 164 79.3
BraA07t30311Z Brassica rapa HOM05D003206 ORTHO05D005207 1.4e-63 246.5 164 78.0
AT1G80460 Arabidopsis thaliana HOM05D003206 ORTHO05D005207 4.1e-63 245.0 164 78.0
BolC6t40420H Brassica oleracea HOM05D003206 ORTHO05D005207 5.4e-63 244.6 164 78.0
A02p23540 Brassica napus HOM05D003206 ORTHO05D005207 1.2e-62 243.4 164 77.4
BraA02t07347Z Brassica rapa HOM05D003206 ORTHO05D005207 1.2e-62 243.4 164 77.4
AL2G41040 Arabidopsis lyrata HOM05D003206 ORTHO05D005207 2.7e-62 242.3 164 77.4
C02p37310 Brassica napus HOM05D003206 ORTHO05D005207 7.8e-62 240.7 164 76.8
Carub.0002s2712 Capsella rubella HOM05D003206 ORTHO05D005207 1.0e-61 240.4 164 77.4
Thhalv10018399m.g Eutrema salsugineum HOM05D003206 ORTHO05D005207 1.3e-61 240.0 164 76.2
BcaC03g15965 Brassica carinata HOM05D003206 ORTHO05D005207 3.0e-61 238.8 164 75.6
Sp5g35360 Schrenkiella parvula HOM05D003206 ORTHO05D005207 3.0e-61 238.8 164 75.6
BolC2t09741H Brassica oleracea HOM05D003206 ORTHO05D005207 3.9e-61 238.4 164 75.6
CARHR074790 Cardamine hirsuta HOM05D003206 ORTHO05D005207 1.9e-60 236.1 164 74.4
BcaB05g25268 Brassica carinata HOM05D003206 ORTHO05D005207 2.8e-59 232.3 164 75.6
THA.LOC104812468 Tarenaya hassleriana HOM05D003206 ORTHO05D005207 2.3e-58 229.2 164 72.0
Aa31LG4G720 Aethionema arabicum HOM05D003206 ORTHO05D005207 4.0e-58 228.4 164 71.3
Thecc.06G031800 Theobroma cacao HOM05D003206 ORTHO05D005207 8.9e-58 227.3 164 71.3
COL.COLO4_11866 Corchorus olitorius HOM05D003206 ORTHO05D005207 1.2e-57 226.9 164 72.0
Duzib192G0877 Durio zibethinus HOM05D003206 ORTHO05D005207 1.2e-57 226.9 164 71.3
Glyma.07G028600 Glycine max HOM05D003206 ORTHO05D005207 2.0e-57 226.1 164 72.6
Duzib160G0518 Durio zibethinus HOM05D003206 ORTHO05D005207 4.4e-57 224.9 164 70.1
Haze_12952 Corylus avellana HOM05D003206 ORTHO05D005207 5.8e-57 224.6 164 68.9
QL05p032185 Quercus lobata HOM05D003206 ORTHO05D005207 5.8e-57 224.6 164 69.5
Ciclev10025360m.g Citrus clementina HOM05D003206 ORTHO05D005207 7.5e-57 224.2 168 68.5
Atru.chr1.2868 Acer truncatum HOM05D003206 ORTHO05D005207 9.8e-57 223.8 172 66.9
Cpa.g.sc10.151 Carica papaya HOM05D003206 ORTHO05D005207 9.8e-57 223.8 168 68.5
Prupe.3G091800 Prunus persica HOM05D003206 ORTHO05D005207 9.8e-57 223.8 172 66.3
Lj3g0014011 Lotus japonicus HOM05D003206 ORTHO05D005207 1.3e-56 223.4 168 70.2
Hma1.2p1_0461F.1_g157780 Hydrangea macrophylla HOM05D003206 ORTHO05D005207 1.7e-56 223.0 174 64.4
MD17G1215600 Malus domestica HOM05D003206 ORTHO05D005207 1.7e-56 223.0 172 66.3
Gohir.A06G115200 Gossypium hirsutum HOM05D003206 ORTHO05D005207 2.2e-56 222.6 172 66.9
Actinidia03225 Actinidia chinensis HOM05D003206 ORTHO05D005207 3.7e-56 221.9 168 67.3
Ca_12518_v3 Cicer arietinum L. HOM05D003206 ORTHO05D005207 3.7e-56 221.9 164 70.7
CsaV3_7G032210 Cucumis sativus L. HOM05D003206 ORTHO05D005207 6.4e-56 221.1 168 67.3
Gorai.010G138000 Gossypium raimondii HOM05D003206 ORTHO05D005207 6.4e-56 221.1 172 66.3
Medtr4g009920 Medicago truncatula HOM05D003206 ORTHO05D005207 6.4e-56 221.1 168 70.2
Manes.11G060600 Manihot esculenta HOM05D003206 ORTHO05D005207 8.3e-56 220.7 168 66.1
Sed0019835 Sechium edule HOM05D003206 ORTHO05D005207 8.3e-56 220.7 168 67.9
GSVIVG01017422001 Vitis vinifera HOM05D003206 ORTHO05D005207 8.3e-56 220.7 164 68.9
Actinidia18218 Actinidia chinensis HOM05D003206 ORTHO05D005207 1.1e-55 220.3 168 66.7
CiPaw.01G250100 Carya illinoinensis HOM05D003206 ORTHO05D005207 1.1e-55 220.3 168 66.7
MELO3C023442.2 Cucumis melo HOM05D003206 ORTHO05D005207 1.1e-55 220.3 172 66.3
TPR.G38649 Trifolium pratense HOM05D003206 ORTHO05D005207 1.1e-55 220.3 169 70.4
Nitab4.5_0004013g0050 Nicotiana tabacum HOM05D003206 ORTHO05D005207 1.9e-55 219.5 168 66.7
ClCG09G003080 Citrullus lanatus HOM05D003206 ORTHO05D005207 2.4e-55 219.2 172 65.1
SalBow6G0819 Salvia bowleyana HOM05D003206 ORTHO05D005207 2.4e-55 219.2 164 68.3
Eucgr.J03080 Eucalyptus grandis HOM05D003206 ORTHO05D005207 3.2e-55 218.8 172 67.4
Rhsim08G0211000 Rhododendron simsii HOM05D003206 ORTHO05D005207 3.2e-55 218.8 164 67.7
Dinv38137 Davidia involucrata HOM05D003206 ORTHO05D005207 4.1e-55 218.4 168 65.5
TWI12G0864 Tripterygium wilfordii HOM05D003206 ORTHO05D005207 4.1e-55 218.4 168 66.1
A09p11980 Brassica napus HOM05D003206 ORTHO05D016781 5.4e-55 218.0 139 78.4
RcHm_v2.0_Chr2g0134571 Rosa chinensis HOM05D003206 ORTHO05D005207 5.4e-55 218.0 172 66.9
Nitab4.5_0003072g0120 Nicotiana tabacum HOM05D003206 ORTHO05D005207 7.0e-55 217.6 168 66.1
PSO170G1430 Papaver somniferum HOM05D003206 ORTHO05D005207 7.0e-55 217.6 173 67.1
CAN.G407.13 Capsicum annuum HOM05D003206 ORTHO05D005207 9.2e-55 217.2 168 65.5
Peaxi162Scf00553g00628 Petunia axillaris HOM05D003206 ORTHO05D005207 9.2e-55 217.2 168 66.7
Psat7g257640 Pisum sativum HOM05D003206 ORTHO05D005207 9.2e-55 217.2 168 68.5
MD09G1222300 Malus domestica HOM05D003206 ORTHO05D005207 1.2e-54 216.9 172 65.1
TPR.G12167 Trifolium pratense HOM05D003206 ORTHO05D005207 2.0e-54 216.1 168 67.3
PSO017G7051 Papaver somniferum HOM05D003206 ORTHO05D005207 2.7e-54 215.7 173 66.5
Oeu004214.1 Olea europaea HOM05D003206 ORTHO05D005207 3.5e-54 215.3 164 67.1
TAR626G1759 Trochodendron aralioides HOM05D003206 ORTHO05D005207 3.5e-54 215.3 173 65.9
FvH4_6g29330 Fragaria vesca HOM05D003206 ORTHO05D005207 6.0e-54 214.5 172 65.1
FAN02G2065 Fragaria x ananassa HOM05D003206 ORTHO05D005207 6.0e-54 214.5 172 65.1
FAN02G2439 Fragaria x ananassa HOM05D003206 ORTHO05D005207 6.0e-54 214.5 172 65.1
FAN14G4723 Fragaria x ananassa HOM05D003206 ORTHO05D005207 6.0e-54 214.5 172 65.1
CSS0015374 Camellia sinensis var. sinensis HOM05D003206 ORTHO05D005207 7.8e-54 214.2 168 64.3
Phvul.010G157400 Phaseolus vulgaris HOM05D003206 ORTHO05D005207 7.8e-54 214.2 164 68.9
Sopen03g036390 Solanum pennellii HOM05D003206 ORTHO05D005207 7.8e-54 214.2 168 64.9
HanXRQChr02g0034821 Helianthus annuus HOM05D003206 ORTHO05D005207 1.3e-53 213.4 164 65.2
PGSC0003DMG400014144 Solanum tuberosum HOM05D003206 ORTHO05D005207 1.3e-53 213.4 168 64.3
Dinv30630 Davidia involucrata HOM05D003206 ORTHO05D005207 1.7e-53 213.0 164 65.9
FAN05G2875 Fragaria x ananassa HOM05D003206 ORTHO05D005207 1.7e-53 213.0 172 64.5
Lalb_Chr04g0262301 Lupinus albus HOM05D003206 ORTHO05D005207 1.7e-53 213.0 167 68.9
Oeu018801.1 Olea europaea HOM05D003206 ORTHO05D005207 1.7e-53 213.0 164 65.9
arahy.Tifrunner.gnm1.ann1.TT8CUF Arachis hypogaea HOM05D003206 ORTHO05D005207 2.3e-53 212.6 168 65.5
FAN09G0310 Fragaria x ananassa HOM05D003206 ORTHO05D005207 2.3e-53 212.6 172 64.5
Solyc03g117490.4 Solanum lycopersicum HOM05D003206 ORTHO05D005207 2.3e-53 212.6 168 64.3
Lsat_1_v5_gn_1_31380 Lactuca sativa HOM05D003206 ORTHO05D005207 3.0e-53 212.2 164 65.9
Cc04_g04590 Coffea canephora HOM05D003206 ORTHO05D005207 3.9e-53 211.8 164 64.6
ECA247G4132 Erigeron canadensis HOM05D003206 ORTHO05D005207 6.6e-53 211.1 168 64.3
Eucgr.F03908 Eucalyptus grandis HOM05D003206 ORTHO05D005207 1.1e-52 210.3 169 65.1
Potri.003G030900 Populus trichocarpa HOM05D003206 ORTHO05D005207 1.5e-52 209.9 172 62.8
VMungo0331G1864 Vigna mungo HOM05D003206 ORTHO05D005207 1.9e-52 209.5 164 67.7
Lj5A75T45 Lonicera japonica HOM05D003206 ORTHO05D005207 3.3e-52 208.8 178 60.1
MSTRG.11155 Avicennia marina HOM05D003206 ORTHO05D005207 4.3e-52 208.4 168 63.7
Ciclev10020202m.g Citrus clementina HOM05D003206 ORTHO05D005207 4.3e-52 208.4 164 66.5
Lalb_Chr01g0012271 Lupinus albus HOM05D003206 ORTHO05D005207 4.3e-52 208.4 169 65.1
Hund06548 Selenicereus undatus HOM05D003206 ORTHO05D005207 4.3e-52 208.4 164 64.6
AUR62016312 Chenopodium quinoa HOM05D003206 ORTHO05D005207 5.6e-52 208.0 168 62.5
Duzib235G0619 Durio zibethinus HOM05D003206 ORTHO05D005207 5.6e-52 208.0 179 61.5
PGR102G2366 Punica granatum HOM05D003206 ORTHO05D005207 5.6e-52 208.0 164 65.2
TPR.G38684 Trifolium pratense HOM05D003206 ORTHO05D005207 5.6e-52 208.0 166 66.3
FvH4_6g29340 Fragaria vesca HOM05D003206 ORTHO05D005207 7.3e-52 207.6 168 63.1
FAN09G0009 Fragaria x ananassa HOM05D003206 ORTHO05D005207 7.3e-52 207.6 168 63.7
SGA_v2.0_scaffold5G02725 Striga asiatica HOM05D003206 ORTHO05D005207 7.3e-52 207.6 168 63.7
Sabra03G0017400 Salix brachista HOM05D003206 ORTHO05D005207 9.5e-52 207.2 172 62.2
Ah.01g020430 Amaranthus hybridus HOM05D003206 ORTHO05D005207 1.2e-51 206.8 164 63.4
arahy.Tifrunner.gnm1.ann1.ZMG720 Arachis hypogaea HOM05D003206 ORTHO05D005207 1.2e-51 206.8 193 58.0
FAN02G3805 Fragaria x ananassa HOM05D003206 ORTHO05D005207 1.6e-51 206.5 168 63.7
Lsat_1_v5_gn_5_8920 Lactuca sativa HOM05D003206 ORTHO05D005207 1.6e-51 206.5 164 61.6
Lalb_Chr25g0279091 Lupinus albus HOM05D003206 ORTHO05D005207 1.6e-51 206.5 164 65.2
Aqoxy7G03604 Aquilegia oxysepala HOM05D003206 ORTHO05D005207 4.7e-51 204.9 171 62.0
EL10Ac9g21895 Beta vulgaris HOM05D003206 ORTHO05D005207 4.7e-51 204.9 164 62.8
Migut.I00744 Erythranthe guttata HOM05D003206 ORTHO05D005207 6.2e-51 204.5 164 63.4
CANSAT56G2846 Cannabis sativa HOM05D003206 ORTHO05D005207 8.1e-51 204.1 169 63.9
DCAR_016275 Daucus carota HOM05D003206 ORTHO05D005207 8.1e-51 204.1 172 61.6
Nn8g39607 Nelumbo nucifera HOM05D003206 ORTHO05D005207 8.1e-51 204.1 177 61.0
Os04g0647800 Oryza sativa ssp. japonica HOM05D003206 ORTHO05D005207 1.8e-50 203.0 177 59.9
AUR62011496 Chenopodium quinoa HOM05D003206 ORTHO05D005207 2.3e-50 202.6 164 62.8
DCAR_025524 Daucus carota HOM05D003206 ORTHO05D005207 2.3e-50 202.6 172 59.3
unitig_699.g19091 Utricularia gibba HOM05D003206 ORTHO05D005207 2.3e-50 202.6 164 61.0
Aqoxy7G02449 Aquilegia oxysepala HOM05D003206 ORTHO05D005207 4.0e-50 201.8 165 65.5
QL05p032218 Quercus lobata HOM05D003206 ORTHO05D005207 8.9e-50 200.7 168 59.5
Zm00001eb068580 Zea mays HOM05D003206 ORTHO05D005207 3.4e-49 198.7 168 61.9
Nn2g12167 Nelumbo nucifera HOM05D003206 ORTHO05D005207 5.8e-49 198.0 181 58.6
MBI14_g04912_MAGBIO Magnolia biondii HOM05D003206 ORTHO05D005207 2.2e-48 196.1 173 59.5
TAR383G0666 Trochodendron aralioides HOM05D003206 ORTHO05D005207 2.2e-48 196.1 177 58.2
MSTRG.4700 Avicennia marina HOM05D003206 ORTHO05D005207 1.1e-47 193.7 172 58.1
CDE02G1563 Ceratophyllum demersum HOM05D003206 ORTHO05D005207 1.0e-45 187.2 177 57.6
CDE04G3165 Ceratophyllum demersum HOM05D003206 ORTHO05D005207 2.3e-45 186.0 177 56.5
Cfa003309 Carpinus fangiana HOM05D003206 ORTHO05D005207 3.0e-45 185.7 107 79.4
ATR0767G098 Amborella trichopoda HOM05D003206 ORTHO05D005207 8.6e-45 184.1 172 54.1
Sc10g0006040 Simmondsia chinensis HOM05D003206 ORTHO05D005207 1.1e-44 183.7 107 78.5
Aqoxy133s002 Aquilegia oxysepala HOM05D003206 ORTHO05D017170 1.5e-44 183.3 149 64.4
Cfa001939 Carpinus fangiana HOM05D003206 ORTHO05D005207 2.5e-44 182.6 107 78.5
HPP92_026428 Vanilla planifolia HOM05D003206 ORTHO05D005207 6.2e-43 177.9 173 53.2
Gohir.D06G120000 Gossypium hirsutum HOM05D003206 ORTHO05D005207 1.1e-42 177.2 172 57.6
AagrBONN_evm.TU.Sc2ySwM_228.3101 Anthoceros agrestis HOM05D003206 ORTHO05D005207 6.8e-42 174.5 163 55.8
SMO271G0060 Selaginella moellendorffii HOM05D003206 ORTHO05D005207 3.4e-41 172.2 172 52.3
BolC2t11510H Brassica oleracea HOM05D003206 ORTHO05D016781 3.8e-40 168.7 81 100.0
TAR626G0098 Trochodendron aralioides HOM05D003206 ORTHO05D005207 1.1e-39 167.2 126 65.1
Ciclev10025756m.g Citrus clementina HOM05D003206 ORTHO05D005207 7.1e-39 164.5 170 55.3
C02p54480 Brassica napus HOM05D003206 ORTHO05D016781 2.1e-38 162.9 77 100.0
C07p18050 Brassica napus HOM05D003206 ORTHO05D016781 3.5e-38 162.2 82 95.1
BolC3t19546H Brassica oleracea HOM05D003206 ORTHO05D016781 1.3e-37 160.2 81 95.1
SEGI_06294 Sequoiadendron giganteum HOM05D003206 ORTHO05D005207 2.3e-37 159.5 172 51.2
Mapoly0004s0005 Marchantia polymorpha HOM05D003206 ORTHO05D005207 3.0e-37 159.1 161 52.8
unitig_27.g24951 Utricularia gibba HOM05D003206 ORTHO05D017170 1.4e-34 150.2 123 61.0
Pp3c5_10000 Physcomitrium patens HOM05D003206 ORTHO05D005207 1.5e-33 146.7 174 47.7
vmacro19016 Vaccinium macrocarpon HOM05D003206 ORTHO05D005207 3.8e-32 142.1 113 64.6
BcaC07g39914 Brassica carinata HOM05D003206 ORTHO05D005207 3.2e-31 139.0 132 61.4
PRCOL_00002221 Prasinoderma coloniale HOM05D003206 ORTHO05D005207 1.2e-25 120.6 150 44.0
Cre04.g224150 Chlamydomonas reinhardtii HOM05D003206 ORTHO05D005207 3.4e-25 119.0 169 41.4
MCO09G056 Micromonas commoda HOM05D003206 ORTHO05D005207 9.9e-25 117.5 164 43.9
ATR0810G084 Amborella trichopoda HOM05D003206 ORTHO05D017170 4.9e-24 115.2 122 49.2
CBR_g36912 Chara braunii HOM05D003206 ORTHO05D005207 1.4e-23 113.6 225 33.3
BcaC03g15966 Brassica carinata HOM05D003206 ORTHO05D005207 4.2e-23 112.1 143 46.9
C04p28650 Brassica napus HOM05D003206 ORTHO05D024104 9.3e-23 110.9 56 91.1
C07p18040 Brassica napus HOM05D003206 ORTHO05D024104 9.3e-23 110.9 56 92.9
Haze_26576 Corylus avellana HOM05D003206 ORTHO05D164003 9.3e-23 110.9 158 39.9
CBR_g30419 Chara braunii HOM05D003206 ORTHO05D005207 1.2e-22 110.5 225 32.9
Cfa027331 Carpinus fangiana HOM05D003206 ORTHO05D122679 4.3e-20 102.1 146 42.5
A01p22200 Brassica napus HOM05D002716 ORTHO05D016058 4.8e-19 98.6 52 90.4
Pp3s42_220 Physcomitrium patens HOM05D003206 ORTHO05D310700 6.2e-19 98.2 147 37.4
Haze_20327 Corylus avellana HOM05D003206 ORTHO05D005207 1.5e-17 93.6 76 60.5
ECA246G2681 Erigeron canadensis HOM05D003206 ORTHO05D005207 4.5e-17 92.0 164 37.8
Ciclev10024258m.g Citrus clementina HOM05D003206 ORTHO05D005207 7.6e-17 91.3 57 73.7
Actinidia01729 Actinidia chinensis HOM05D003206 ORTHO05D017170 1.7e-16 90.1 84 58.3
Ciclev10027554m.g Citrus clementina HOM05D003206 ORTHO05D005207 2.2e-16 89.7 57 73.7
Haze_26767 Corylus avellana HOM05D003206 ORTHO05D005207 2.2e-16 89.7 159 33.3
GSVIVG01015682001 Vitis vinifera HOM05D000086 ORTHO05D000431 5.5e-15 85.1 75 60.0
A03p18490 Brassica napus HOM05D003206 ORTHO05D016781 1.8e-13 80.1 38 94.7
CSS0045117 Camellia sinensis var. sinensis HOM05D003206 ORTHO05D005207 3.9e-13 79.0 56 62.5
Zm00001eb393230 Zea mays HOM05D003206 ORTHO05D022459 1.8e-10 70.1 38 84.2
Lsat_1_v5_gn_8_93800 Lactuca sativa HOM05D003206 ORTHO05D024104 1.5e-09 67.0 51 58.8
COL.COLO4_08784 Corchorus olitorius HOM05D000005 ORTHO05D000012 4.6e-06 55.5 32 84.4


User provided reference genes

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