Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
BcaC03g17463 Brassica carinata HOM05D006554 ORTHO05D017433 2.3e-228 795.4 473 100.0
C02p54190 Brassica napus HOM05D006554 ORTHO05D008778 1.6e-221 772.7 489 95.1
A02p35470 Brassica napus HOM05D006554 ORTHO05D017433 2.1e-184 649.4 542 77.9
BraA02t08548Z Brassica rapa HOM05D006554 ORTHO05D017433 2.7e-176 622.5 550 75.3
BolC2t11482H Brassica oleracea HOM05D006554 ORTHO05D008778 3.0e-127 459.5 251 94.8
Sp2g16620 Schrenkiella parvula HOM05D006554 ORTHO05D008778 4.9e-85 319.3 247 68.4
Thhalv10004828m.g Eutrema salsugineum HOM05D006554 ORTHO05D008778 2.5e-81 307.0 245 64.9
AL5G16780 Arabidopsis lyrata HOM05D006554 ORTHO05D008778 1.1e-68 265.0 244 61.5
Carub.0005s0577 Capsella rubella HOM05D006554 ORTHO05D008778 4.1e-63 246.5 245 56.7
AT3G27420 Arabidopsis thaliana HOM05D006554 ORTHO05D008778 1.2e-62 245.0 238 57.6
BcaB07g30158 Brassica carinata HOM05D006554 ORTHO05D008778 6.1e-59 232.6 131 84.7
CARHR148770 Cardamine hirsuta HOM05D006554 ORTHO05D008778 3.1e-55 220.3 243 55.1
A04p13620 Brassica napus HOM05D004424 ORTHO05D005476 1.3e-53 214.9 240 51.7
BraA04t17023Z Brassica rapa HOM05D004424 ORTHO05D005476 1.3e-53 214.9 240 51.7
AL7G49210 Arabidopsis lyrata HOM05D006554 ORTHO05D008778 8.5e-53 212.2 240 50.4
BolC4t26342H Brassica oleracea HOM05D006554 ORTHO05D008778 3.2e-52 210.3 243 49.8
C04p47410 Brassica napus HOM05D004424 ORTHO05D005476 5.5e-52 209.5 239 50.2
Sp7g01270 Schrenkiella parvula HOM05D006554 ORTHO05D008778 1.2e-51 208.4 241 49.4
Carub.0007s3489 Capsella rubella HOM05D006554 ORTHO05D008778 1.6e-51 208.0 250 48.8
AT5G40600 Arabidopsis thaliana HOM05D006554 ORTHO05D008778 7.4e-49 199.1 250 47.6
C07p36490 Brassica napus HOM05D003110 ORTHO05D003585 2.2e-48 197.6 245 56.3
BolC7t44168H Brassica oleracea HOM05D003110 ORTHO05D003585 6.3e-48 196.1 334 50.3
Thhalv10027933m.g Eutrema salsugineum HOM05D006554 ORTHO05D008778 1.1e-47 195.3 238 48.3
CARHR261360 Cardamine hirsuta HOM05D006554 ORTHO05D008778 6.5e-45 186.0 250 47.6
BcaC06g30990 Brassica carinata HOM05D003110 ORTHO05D003585 8.5e-45 185.7 279 53.8
Thhalv10004967m.g Eutrema salsugineum HOM05D006554 ORTHO05D017433 2.1e-43 181.0 230 54.8
BolC4t27196H Brassica oleracea HOM05D006554 ORTHO05D008778 4.7e-43 179.9 217 46.5
BcaC06g30994 Brassica carinata HOM05D006554 ORTHO05D017433 4.8e-40 169.9 159 65.4
BcaC06g33820 Brassica carinata HOM05D006554 ORTHO05D017433 2.2e-37 161.0 145 65.5
Aa31LG9G1020 Aethionema arabicum HOM05D006554 ORTHO05D008778 1.1e-36 158.7 246 40.7
BcaC06g30992 Brassica carinata HOM05D000131 ORTHO05D008778 1.6e-35 154.8 312 40.4
A06p41180 Brassica napus HOM05D003110 ORTHO05D003585 2.1e-35 154.5 273 50.2
BraA06t27041Z Brassica rapa HOM05D003110 ORTHO05D003585 2.1e-35 154.5 273 50.2
BraA09t35980Z Brassica rapa HOM05D001287 ORTHO05D001226 8.0e-35 152.5 224 60.3
AT3G27415 Arabidopsis thaliana HOM05D006554 ORTHO05D017433 3.0e-34 150.6 229 51.5
Carub.0005s0573 Capsella rubella HOM05D006554 ORTHO05D017433 3.3e-33 147.1 230 51.3
BcaB06g27536 Brassica carinata HOM05D006554 ORTHO05D008778 7.5e-33 146.0 153 49.7
A09p03420 Brassica napus HOM05D001287 ORTHO05D001226 4.2e-28 130.2 224 46.4
CARHR148760 Cardamine hirsuta HOM05D006554 ORTHO05D017433 4.0e-26 123.6 234 54.7
ClCG05G012880 Citrullus lanatus HOM05D006554 ORTHO05D008778 4.5e-22 110.2 257 31.9
Duzib147G0564 Durio zibethinus HOM05D006554 ORTHO05D008778 1.3e-21 108.6 293 30.4
MELO3C014791.2 Cucumis melo HOM05D006554 ORTHO05D008778 2.3e-21 107.8 254 33.9
Lalb_Chr22g0360641 Lupinus albus HOM05D006554 ORTHO05D008778 2.3e-21 107.8 276 32.6
RcHm_v2.0_Chr2g0173581 Rosa chinensis HOM05D006554 ORTHO05D008778 3.8e-21 107.1 297 31.0
QL02p073734 Quercus lobata HOM05D006554 ORTHO05D008778 8.6e-21 105.9 274 34.3
CsaV3_3G027590 Cucumis sativus L. HOM05D006554 ORTHO05D008778 1.9e-20 104.8 264 30.7
FvH4_6g52060 Fragaria vesca HOM05D006554 ORTHO05D008778 5.5e-20 103.2 261 33.0
Potri.003G101100 Populus trichocarpa HOM05D006554 ORTHO05D008778 1.6e-19 101.7 266 31.6
Nn4g22538 Nelumbo nucifera HOM05D006554 ORTHO05D008778 2.1e-19 101.3 226 35.8
Manes.15G153200 Manihot esculenta HOM05D006554 ORTHO05D008778 2.8e-19 100.9 315 28.6
FAN09G2431 Fragaria x ananassa HOM05D006554 ORTHO05D008778 3.6e-19 100.5 257 32.3
Haze_14775 Corylus avellana HOM05D006554 ORTHO05D008778 4.7e-19 100.1 232 33.2
Cfa007322 Carpinus fangiana HOM05D006554 ORTHO05D008778 6.1e-19 99.8 232 32.8
FAN02G3632 Fragaria x ananassa HOM05D006554 ORTHO05D008778 6.1e-19 99.8 261 32.2
MD09G1020300 Malus domestica HOM05D006554 ORTHO05D008778 8.0e-19 99.4 322 29.5
Hma1.2p1_0279F.1_g111960 Hydrangea macrophylla HOM05D006554 ORTHO05D008778 1.4e-18 98.6 223 34.1
FAN14G0519 Fragaria x ananassa HOM05D006554 ORTHO05D008778 1.8e-18 98.2 282 30.5
Medtr7g032890 Medicago truncatula HOM05D006554 ORTHO05D008778 1.8e-18 98.2 302 29.8
Sed0003688 Sechium edule HOM05D006554 ORTHO05D008778 1.8e-18 98.2 257 31.9
Gohir.D04G059400 Gossypium hirsutum HOM05D006554 ORTHO05D008778 4.0e-18 97.1 284 31.0
Gorai.012G066100 Gossypium raimondii HOM05D006554 ORTHO05D008778 4.0e-18 97.1 284 31.0
Lj1g0005465 Lotus japonicus HOM05D006554 ORTHO05D008778 4.0e-18 97.1 270 30.4
Prupe.3G295900 Prunus persica HOM05D006554 ORTHO05D008778 5.2e-18 96.7 311 30.5
SGA_v2.0_scaffold135G34926 Striga asiatica HOM05D006554 ORTHO05D008778 5.2e-18 96.7 277 30.3
Ciclev10015858m.g Citrus clementina HOM05D006554 ORTHO05D008778 6.8e-18 96.3 139 41.7
PGR083G2647 Punica granatum HOM05D006554 ORTHO05D008778 6.8e-18 96.3 253 33.2
Ah.03g136830 Amaranthus hybridus HOM05D003292 ORTHO05D004237 1.2e-17 95.5 300 28.7
AUR62028440 Chenopodium quinoa HOM05D006554 ORTHO05D008778 1.2e-17 95.5 298 30.9
Gohir.A05G353700 Gossypium hirsutum HOM05D006554 ORTHO05D008778 1.2e-17 95.5 284 30.6
RhsimUnG0087800 Rhododendron simsii HOM05D006554 ORTHO05D008778 1.2e-17 95.5 274 31.0
TAR629G0722 Trochodendron aralioides HOM05D006554 ORTHO05D008778 1.5e-17 95.1 127 44.1
BcaB07g30159 Brassica carinata HOM05D003110 ORTHO05D003585 2.0e-17 94.7 129 53.5
EL10Ac5g11640 Beta vulgaris HOM05D006554 ORTHO05D008778 9.8e-17 92.4 123 44.7
FAN05G3817 Fragaria x ananassa HOM05D006554 ORTHO05D008778 1.3e-16 92.0 281 30.6
Phvul.008G147100 Phaseolus vulgaris HOM05D006554 ORTHO05D008778 1.3e-16 92.0 287 27.5
Thecc.04G022100 Theobroma cacao HOM05D006554 ORTHO05D008778 1.3e-16 92.0 138 38.4
unitig_52.g17657 Utricularia gibba HOM05D006554 ORTHO05D008778 1.7e-16 91.7 231 33.8
GSVIVG01032362001 Vitis vinifera HOM05D006554 ORTHO05D008778 2.2e-16 91.3 159 38.4
Dinv33413 Davidia involucrata HOM05D006554 ORTHO05D008778 2.8e-16 90.9 124 42.7
vmacro05891 Vaccinium macrocarpon HOM05D006554 ORTHO05D008778 2.8e-16 90.9 221 30.8
Glyma.19G079100 Glycine max HOM05D006554 ORTHO05D008778 4.9e-16 90.1 222 29.7
TPR.G1120 Trifolium pratense HOM05D006554 ORTHO05D008778 4.9e-16 90.1 301 29.2
Aqoxy5G03668 Aquilegia oxysepala HOM05D006554 ORTHO05D008778 8.3e-16 89.4 127 40.2
ECA246G2886 Erigeron canadensis HOM05D006554 ORTHO05D008778 8.3e-16 89.4 143 37.1
Cc07_g00120 Coffea canephora HOM05D006554 ORTHO05D008778 1.1e-15 89.0 202 32.7
Glyma.16G067800 Glycine max HOM05D006554 ORTHO05D008778 1.1e-15 89.0 288 29.9
SalBow1G4569 Salvia bowleyana HOM05D006554 ORTHO05D008778 1.1e-15 89.0 277 28.5
MSTRG.3126 Avicennia marina HOM05D006554 ORTHO05D008778 1.8e-15 88.2 308 29.9
RhsimUnG0005800 Rhododendron simsii HOM05D006554 ORTHO05D008778 1.8e-15 88.2 274 30.3
Atru.chr6.2449 Acer truncatum HOM05D006554 ORTHO05D008778 4.1e-15 87.0 102 44.1
Lsat_1_v5_gn_0_6020 Lactuca sativa HOM05D006554 ORTHO05D008778 4.1e-15 87.0 135 43.0
Sabra03G0068900 Salix brachista HOM05D006554 ORTHO05D008778 1.2e-14 85.5 141 38.3
Prupe.3G207500 Prunus persica HOM05D006554 ORTHO05D008778 3.5e-14 84.0 290 30.0
ATR0199G021 Amborella trichopoda HOM05D006554 ORTHO05D008778 1.7e-13 81.6 216 30.6
CiPaw.04G030700 Carya illinoinensis HOM05D006554 ORTHO05D008778 2.3e-13 81.3 223 29.6
CANSAT64G1839 Cannabis sativa HOM05D006554 ORTHO05D008778 5.0e-13 80.1 320 29.1
Eucgr.J02264 Eucalyptus grandis HOM05D006554 ORTHO05D008778 1.1e-12 79.0 128 36.7
Migut.H00036 Erythranthe guttata HOM05D006554 ORTHO05D008778 1.5e-12 78.6 179 29.1
PSO675G3751 Papaver somniferum HOM05D006554 ORTHO05D008778 1.9e-12 78.2 147 34.0
CSS0050446 Camellia sinensis var. sinensis HOM05D006554 ORTHO05D008778 4.3e-12 77.0 140 34.3
FAN14G5462 Fragaria x ananassa HOM05D006554 ORTHO05D008778 7.3e-12 76.3 124 38.7
PSO541G1758 Papaver somniferum HOM05D006554 ORTHO05D008778 9.5e-12 75.9 147 33.3
Peaxi162Scf00080g01410 Petunia axillaris HOM05D006554 ORTHO05D008778 9.5e-12 75.9 129 37.2
Hund23035 Selenicereus undatus HOM05D006554 ORTHO05D008778 1.6e-11 75.1 274 27.7
Solyc02g067900.3 Solanum lycopersicum HOM05D006554 ORTHO05D008778 1.6e-11 75.1 178 32.6
arahy.Tifrunner.gnm1.ann1.1L0SFZ Arachis hypogaea HOM05D006554 ORTHO05D008778 3.6e-11 73.9 236 28.0
Nitab4.5_0000040g0640 Nicotiana tabacum HOM05D006554 ORTHO05D008778 4.7e-11 73.6 177 31.6
PGSC0003DMG400006964 Solanum tuberosum HOM05D006554 ORTHO05D008778 1.4e-10 72.0 181 32.6
VMungo1383G1633 Vigna mungo HOM05D006554 ORTHO05D008778 2.3e-10 71.2 106 36.8
HPP92_003738 Vanilla planifolia HOM05D006554 ORTHO05D008778 3.1e-10 70.9 96 41.7
CDE09G0234 Ceratophyllum demersum HOM05D006554 ORTHO05D008778 5.2e-10 70.1 107 42.1
CDE02G2727 Ceratophyllum demersum HOM05D003393 ORTHO05D003916 6.8e-10 69.7 137 35.8
Nitab4.5_0004496g0080 Nicotiana tabacum HOM05D006554 ORTHO05D008778 1.2e-09 68.9 183 30.6
Sopen02g017020 Solanum pennellii HOM05D006554 ORTHO05D008778 1.2e-09 68.9 183 31.1
CSS0049853 Camellia sinensis var. sinensis HOM05D006554 ORTHO05D008778 2.0e-09 68.2 72 47.2
SHI53794 Sapria himalayana HOM05D006554 ORTHO05D008778 2.6e-09 67.8 216 26.4
Oeu050455.2 Olea europaea HOM05D006554 ORTHO05D008778 6.4e-08 63.2 233 26.6
Actinidia05967 Actinidia chinensis HOM05D006554 ORTHO05D008778 7.0e-07 59.7 107 36.4
Psat4g111960 Pisum sativum HOM05D000336 ORTHO05D002705 2.7e-06 57.8 172 26.2


User provided reference genes

Program Settings