Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
BcaC03g17340 Brassica carinata HOM05D004862 ORTHO05D005841 1.3e-196 689.5 340 100.0
BcaC03g17366 Brassica carinata HOM05D004862 ORTHO05D005841 2.4e-190 668.7 360 93.1
BolC2t11381H Brassica oleracea HOM05D004862 ORTHO05D005841 2.4e-190 668.7 360 93.1
BcaB07g30229 Brassica carinata HOM05D004862 ORTHO05D005841 1.5e-184 649.4 360 90.3
BraA02t08465Z Brassica rapa HOM05D004862 ORTHO05D005841 2.0e-184 649.0 360 89.7
Thhalv10004120m.g Eutrema salsugineum HOM05D004862 ORTHO05D005841 4.3e-184 647.9 360 89.2
A02p34570 Brassica napus HOM05D004862 ORTHO05D005841 2.4e-182 642.1 360 89.7
AT3G26410 Arabidopsis thaliana HOM05D004862 ORTHO05D005841 4.5e-181 637.9 360 88.1
Sp2g15560 Schrenkiella parvula HOM05D004862 ORTHO05D005841 5.9e-181 637.5 360 87.5
BcaNung06886 Brassica carinata HOM05D004862 ORTHO05D005841 1.7e-180 636.0 361 88.1
C07p35450 Brassica napus HOM05D004862 ORTHO05D005841 1.7e-180 636.0 361 88.1
BolC7t44069H Brassica oleracea HOM05D004862 ORTHO05D005841 1.7e-180 636.0 361 88.1
AL5G15180 Arabidopsis lyrata HOM05D004862 ORTHO05D005841 3.8e-180 634.8 360 87.5
CARHR147430 Cardamine hirsuta HOM05D004862 ORTHO05D005841 6.5e-180 634.0 362 88.1
A06p42030 Brassica napus HOM05D004862 ORTHO05D005841 3.2e-179 631.7 361 88.1
BraA06t27120Z Brassica rapa HOM05D004862 ORTHO05D005841 7.2e-179 630.6 361 88.1
Carub.0005s0438 Capsella rubella HOM05D004862 ORTHO05D005841 1.6e-178 629.4 360 86.7
C02p53070 Brassica napus HOM05D004862 ORTHO05D005841 2.6e-176 622.1 360 88.6
C02p52870 Brassica napus HOM05D004862 ORTHO05D005841 4.1e-174 614.8 303 100.0
Aa31LG2G6120 Aethionema arabicum HOM05D004862 ORTHO05D005841 8.5e-172 607.1 360 83.6
BolC2t11366H Brassica oleracea HOM05D004862 ORTHO05D005841 1.3e-167 593.2 332 91.0
C02p53050 Brassica napus HOM05D004862 ORTHO05D005841 3.7e-167 591.7 324 92.0
THA.LOC104818254 Tarenaya hassleriana HOM05D004862 ORTHO05D005841 2.6e-152 542.3 359 74.9
Cfa010154 Carpinus fangiana HOM05D004862 ORTHO05D005841 7.0e-150 534.3 361 72.0
CiPaw.13G145700 Carya illinoinensis HOM05D004862 ORTHO05D005841 7.0e-150 534.3 361 72.3
Phvul.002G205600 Phaseolus vulgaris HOM05D004862 ORTHO05D005841 5.9e-149 531.2 360 71.4
Haze_23539 Corylus avellana HOM05D004862 ORTHO05D005841 1.3e-148 530.0 361 71.7
Nitab4.5_0005079g0020 Nicotiana tabacum HOM05D004862 ORTHO05D005841 2.3e-148 529.3 361 70.6
arahy.Tifrunner.gnm1.ann1.WE1E8S Arachis hypogaea HOM05D004862 ORTHO05D005841 2.9e-148 528.9 360 71.9
arahy.Tifrunner.gnm1.ann1.34Q84K Arachis hypogaea HOM05D004862 ORTHO05D005841 1.1e-147 526.9 360 71.7
Eucgr.G00660 Eucalyptus grandis HOM05D004862 ORTHO05D005841 1.1e-147 526.9 360 70.8
Lj4g0019477 Lotus japonicus HOM05D004862 ORTHO05D005841 2.5e-147 525.8 361 70.6
Ca_29818_v3 Cicer arietinum L. HOM05D004862 ORTHO05D005841 4.2e-147 525.0 360 70.6
DCAR_021834 Daucus carota HOM05D004862 ORTHO05D005841 9.5e-147 523.9 360 70.0
Glyma.08G075600 Glycine max HOM05D004862 ORTHO05D005841 9.5e-147 523.9 360 70.8
Manes.14G165200 Manihot esculenta HOM05D004862 ORTHO05D005841 1.6e-146 523.1 359 71.3
Dinv24234 Davidia involucrata HOM05D004862 ORTHO05D005841 2.8e-146 522.3 361 70.6
Gohir.A01G012300 Gossypium hirsutum HOM05D004862 ORTHO05D005841 2.8e-146 522.3 359 71.9
Duzib132G0210 Durio zibethinus HOM05D004862 ORTHO05D005841 4.7e-146 521.5 359 71.6
Nitab4.5_0000078g0200 Nicotiana tabacum HOM05D004862 ORTHO05D005841 4.7e-146 521.5 361 69.8
Thecc.02G156500 Theobroma cacao HOM05D004862 ORTHO05D005841 8.0e-146 520.8 359 71.6
Gorai.002G015300 Gossypium raimondii HOM05D004862 ORTHO05D005841 1.4e-145 520.0 359 71.6
Solyc10g047120.2 Solanum lycopersicum HOM05D004862 ORTHO05D005841 2.3e-145 519.2 360 70.3
FAN14G5837 Fragaria x ananassa HOM05D004862 ORTHO05D005841 3.0e-145 518.8 360 70.0
Glyma.05G121000 Glycine max HOM05D004862 ORTHO05D005841 3.0e-145 518.8 360 69.7
Sed0027136 Sechium edule HOM05D004862 ORTHO05D005841 4.0e-145 518.5 362 71.5
Sopen10g017280 Solanum pennellii HOM05D004862 ORTHO05D005841 5.2e-145 518.1 360 69.7
CSS0027197 Camellia sinensis var. sinensis HOM05D004862 ORTHO05D005841 8.9e-145 517.3 360 70.0
ClCG09G014610 Citrullus lanatus HOM05D004862 ORTHO05D005841 1.2e-144 516.9 361 71.5
FAN05G4126 Fragaria x ananassa HOM05D004862 ORTHO05D005841 1.2e-144 516.9 361 69.8
FAN14G4788 Fragaria x ananassa HOM05D004862 ORTHO05D005841 1.2e-144 516.9 360 69.7
Lalb_Chr07g0189371 Lupinus albus HOM05D004862 ORTHO05D005841 1.2e-144 516.9 364 69.8
MD12G1223100 Malus domestica HOM05D004862 ORTHO05D005841 1.2e-144 516.9 360 69.7
RcHm_v2.0_Chr3g0454151 Rosa chinensis HOM05D004862 ORTHO05D005841 1.2e-144 516.9 361 69.3
CSS0014529 Camellia sinensis var. sinensis HOM05D004862 ORTHO05D005841 1.5e-144 516.5 360 70.0
COL.COLO4_33088 Corchorus olitorius HOM05D004862 ORTHO05D005841 1.5e-144 516.5 359 70.5
Peaxi162Scf00003g03739 Petunia axillaris HOM05D004862 ORTHO05D005841 2.0e-144 516.2 360 70.8
MELO3C012691.2 Cucumis melo HOM05D004862 ORTHO05D005841 3.4e-144 515.4 362 71.5
Prupe.6G329700 Prunus persica HOM05D004862 ORTHO05D005841 3.4e-144 515.4 361 69.5
Hund06875 Selenicereus undatus HOM05D004862 ORTHO05D005841 4.4e-144 515.0 356 69.7
FvH4_6g05370 Fragaria vesca HOM05D004862 ORTHO05D005841 7.5e-144 514.2 361 69.3
TWI23G0249 Tripterygium wilfordii HOM05D004862 ORTHO05D005841 9.8e-144 513.8 359 69.6
ECA240G2004 Erigeron canadensis HOM05D004862 ORTHO05D005841 1.7e-143 513.1 361 69.3
Nn1g06191 Nelumbo nucifera HOM05D004862 ORTHO05D005841 2.2e-143 512.7 360 69.4
Lsat_1_v5_gn_9_117961 Lactuca sativa HOM05D004862 ORTHO05D005841 2.8e-143 512.3 361 69.8
FAN02G3155 Fragaria x ananassa HOM05D004862 ORTHO05D005841 3.7e-143 511.9 361 69.5
Sc09g0004450 Simmondsia chinensis HOM05D004862 ORTHO05D005841 8.3e-143 510.8 359 70.2
Atru.chr6.1121 Acer truncatum HOM05D004862 ORTHO05D005841 1.1e-142 510.4 361 70.1
Psat7g096360 Pisum sativum HOM05D004862 ORTHO05D005841 1.1e-142 510.4 355 70.1
VMungo0251G1232 Vigna mungo HOM05D004862 ORTHO05D005841 1.4e-142 510.0 385 66.0
Cc02_g18820 Coffea canephora HOM05D004862 ORTHO05D005841 1.8e-142 509.6 362 69.3
CAN.G1.65 Capsicum annuum HOM05D004862 ORTHO05D005841 2.4e-142 509.2 360 67.8
Gohir.D13G060400 Gossypium hirsutum HOM05D004862 ORTHO05D005841 2.4e-142 509.2 357 71.7
Gohir.D01G013500 Gossypium hirsutum HOM05D004862 ORTHO05D005841 3.2e-142 508.8 335 73.1
Rhsim11G0133700 Rhododendron simsii HOM05D004862 ORTHO05D005841 4.1e-142 508.4 356 69.9
SGA_v2.0_scaffold332G48937 Striga asiatica HOM05D004862 ORTHO05D005841 4.1e-142 508.4 362 69.3
FAN09G3019 Fragaria x ananassa HOM05D004862 ORTHO05D005841 1.2e-141 506.9 361 69.0
Aqoxy6G00342 Aquilegia oxysepala HOM05D004862 ORTHO05D005841 2.7e-141 505.8 360 68.6
TAR116G0002 Trochodendron aralioides HOM05D004862 ORTHO05D005841 2.7e-141 505.8 358 69.0
PGR042G3925 Punica granatum HOM05D004862 ORTHO05D005841 3.5e-141 505.4 363 68.3
PGSC0003DMG400017691 Solanum tuberosum HOM05D004862 ORTHO05D005841 3.5e-141 505.4 396 63.6
Ah.04g163010 Amaranthus hybridus HOM05D004862 ORTHO05D005841 5.9e-141 504.6 356 68.8
Ciclev10015108m.g Citrus clementina HOM05D004862 ORTHO05D005841 5.9e-141 504.6 359 70.2
Medtr4g094315 Medicago truncatula HOM05D004862 ORTHO05D005841 1.3e-140 503.4 359 68.5
Gorai.013G068500 Gossypium raimondii HOM05D004862 ORTHO05D005841 2.3e-140 502.7 372 69.4
HanXRQChr03g0065771 Helianthus annuus HOM05D004862 ORTHO05D005841 3.9e-140 501.9 357 68.1
EL10Ac4g08938 Beta vulgaris HOM05D004862 ORTHO05D005841 5.0e-140 501.5 358 68.7
Oeu000228.1 Olea europaea HOM05D004862 ORTHO05D005841 1.5e-139 500.0 360 67.8
CANSAT54G0577 Cannabis sativa HOM05D004862 ORTHO05D005841 1.9e-139 499.6 362 69.3
Lj5A244T54 Lonicera japonica HOM05D004862 ORTHO05D005841 1.9e-139 499.6 359 67.4
Potri.001G207000 Populus trichocarpa HOM05D004862 ORTHO05D005841 2.5e-139 499.2 361 69.3
AUR62003397 Chenopodium quinoa HOM05D004862 ORTHO05D005841 4.3e-139 498.4 358 68.4
CDE02G2941 Ceratophyllum demersum HOM05D004862 ORTHO05D005841 5.6e-139 498.0 359 68.2
QL01p020593 Quercus lobata HOM05D004862 ORTHO05D005841 1.2e-138 496.9 454 56.6
PSO675G5038 Papaver somniferum HOM05D004862 ORTHO05D005841 1.6e-138 496.5 362 68.5
MBI06_g20970_MAGBIO Magnolia biondii HOM05D004862 ORTHO05D005841 4.7e-138 495.0 380 65.3
vmacro01803 Vaccinium macrocarpon HOM05D004862 ORTHO05D005841 4.7e-138 495.0 402 62.4
Os02g0556400 Oryza sativa ssp. japonica HOM05D004862 ORTHO05D005841 8.0e-138 494.2 362 67.7
CsaV3_7G022230 Cucumis sativus L. HOM05D004862 ORTHO05D005841 2.3e-137 492.7 340 72.1
PSO541G6054 Papaver somniferum HOM05D004862 ORTHO05D005841 5.8e-136 488.0 367 67.3
Cpa.g.sc845.1 Carica papaya HOM05D004862 ORTHO05D005841 1.3e-135 486.9 326 74.2
AUR62004780 Chenopodium quinoa HOM05D004862 ORTHO05D005841 4.9e-135 485.0 345 69.0
MSTRG.16558 Avicennia marina HOM05D004862 ORTHO05D005841 8.3e-135 484.2 359 66.6
ATR1136G066 Amborella trichopoda HOM05D004862 ORTHO05D005841 1.1e-134 483.8 359 66.3
Migut.B00646 Erythranthe guttata HOM05D004862 ORTHO05D005841 1.1e-134 483.8 360 64.7
Lj9A317G73 Lonicera japonica HOM05D004862 ORTHO05D005841 3.2e-134 482.3 359 64.6
Gohir.A13G061500 Gossypium hirsutum HOM05D004862 ORTHO05D005841 7.0e-134 481.1 335 71.6
FAN05G4337 Fragaria x ananassa HOM05D004862 ORTHO05D005841 2.5e-131 472.6 328 71.0
TAR628G0283 Trochodendron aralioides HOM05D004862 ORTHO05D005841 3.6e-130 468.8 327 70.9
SalBow5G3806 Salvia bowleyana HOM05D004862 ORTHO05D005841 1.4e-129 466.8 449 54.3
Sabra01G0160300 Salix brachista HOM05D004862 ORTHO05D005841 1.5e-128 463.4 446 56.3
SalBow5G4932 Salvia bowleyana HOM05D004862 ORTHO05D005841 1.9e-126 456.4 474 51.5
SHI16537 Sapria himalayana HOM05D004862 ORTHO05D005841 1.6e-125 453.4 358 62.3
Zm00001eb243830 Zea mays HOM05D004862 ORTHO05D005841 1.6e-122 443.4 327 67.9
GSVIVG01029751001 Vitis vinifera HOM05D004862 ORTHO05D005841 2.9e-119 432.6 359 61.6
SEGI_00112 Sequoiadendron giganteum HOM05D004862 ORTHO05D005841 9.6e-115 417.5 351 61.5
Mapoly0006s0193 Marchantia polymorpha HOM05D004862 ORTHO05D005841 5.2e-113 411.8 363 58.4
Ciclev10008412m.g Citrus clementina HOM05D004862 ORTHO05D005841 8.9e-113 411.0 316 65.2
SEGI_34202 Sequoiadendron giganteum HOM05D004862 ORTHO05D005841 2.7e-109 399.4 307 64.5
Pp3c13_18080 Physcomitrium patens HOM05D004862 ORTHO05D005841 5.1e-108 395.2 372 54.6
SMO115G0021 Selaginella moellendorffii HOM05D004862 ORTHO05D005841 4.8e-106 388.7 365 55.1
CBR_g37214 Chara braunii HOM05D004862 ORTHO05D005841 9.3e-102 374.4 337 55.5
HPP92_004630 Vanilla planifolia HOM05D004862 ORTHO05D005841 1.2e-93 347.4 249 66.3
HPP92_004639 Vanilla planifolia HOM05D004862 ORTHO05D005841 1.2e-93 347.4 249 66.3
TPR.G31479 Trifolium pratense HOM05D004862 ORTHO05D005841 3.5e-85 319.3 218 69.7
Ca_25384_v3 Cicer arietinum L. HOM05D004862 ORTHO05D005841 3.2e-78 296.2 191 73.3
Ca_29817_v3 Cicer arietinum L. HOM05D004862 ORTHO05D005841 2.1e-77 293.5 185 74.6
CsaV3_7G014980 Cucumis sativus L. HOM05D004862 ORTHO05D005841 2.4e-65 253.4 154 79.2
CsaV3_UNG189490 Cucumis sativus L. HOM05D004862 ORTHO05D005841 2.4e-65 253.4 154 79.2
Cre08.g359100 Chlamydomonas reinhardtii HOM05D004862 ORTHO05D005841 5.3e-65 252.3 365 41.4
MCO05G740 Micromonas commoda HOM05D004862 ORTHO05D005841 6.7e-60 235.3 314 42.4
CsaV3_7G015000 Cucumis sativus L. HOM05D004862 ORTHO05D005841 2.2e-58 230.3 136 81.6
CsaV3_UNG187480 Cucumis sativus L. HOM05D004862 ORTHO05D005841 2.2e-58 230.3 136 81.6
PRCOL_00003583 Prasinoderma coloniale HOM05D004862 ORTHO05D005841 2.2e-58 230.3 293 44.0
CsaV3_7G014960 Cucumis sativus L. HOM05D004862 ORTHO05D005841 1.0e-55 221.5 136 80.1
BolC2t11379H Brassica oleracea HOM05D004862 ORTHO05D005841 3.5e-48 196.4 119 84.0
unitig_26.g9585 Utricularia gibba HOM05D004862 ORTHO05D005841 4.5e-48 196.1 145 64.1
Ca_31280_v3 Cicer arietinum L. HOM05D004862 ORTHO05D005841 9.1e-41 171.8 106 76.4
CsaV3_UNG197500 Cucumis sativus L. HOM05D004862 ORTHO05D005841 4.5e-40 169.5 106 79.2
Cfa021801 Carpinus fangiana HOM05D004862 ORTHO05D005841 1.3e-34 151.4 301 31.9
unitig_26.g9584 Utricularia gibba HOM05D004862 ORTHO05D005841 6.3e-34 149.1 108 63.0
CsaV3_7G014970 Cucumis sativus L. HOM05D004862 ORTHO05D005841 4.7e-29 132.9 71 90.1
CsaV3_7G015010 Cucumis sativus L. HOM05D004862 ORTHO05D005841 4.7e-29 132.9 71 90.1
Potri.003G022650 Populus trichocarpa HOM05D004862 ORTHO05D005841 2.3e-28 130.6 91 68.1
Cfa010153 Carpinus fangiana HOM05D004862 ORTHO05D005841 2.4e-17 94.0 70 62.9
unitig_26.g9586 Utricularia gibba HOM05D004862 ORTHO05D005841 1.6e-16 91.3 68 66.2
Potri.003G022701 Populus trichocarpa HOM05D004862 ORTHO05D005841 7.8e-16 89.0 76 59.2
Dinv28090 Davidia involucrata HOM05D000259 ORTHO05D000155 1.5e-06 58.2 34 70.6


User provided reference genes

Program Settings